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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 731 |
| AccII | CGCG | 1 cut(s) | 558 |
| AclWI | GGATC | 2 cut(s) | 440, 614 |
| AcoI | YGGCCR | 1 cut(s) | 718 |
| AcyI | GRCGYC | 2 cut(s) | 574, 732 |
| AdeI | CACNNNGTG | 1 cut(s) | 913 |
| AgsI | TTSAA | 2 cut(s) | 265, 769 |
| AhlI | ACTAGT | 1 cut(s) | 865 |
| AjiI | CACGTC | 1 cut(s) | 25 |
| AjnI | CCWGG | 1 cut(s) | 18 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 177, 209 |
| AluBI | AGCT | 4 cut(s) | 44, 451, 461, 905 |
| AluI | AGCT | 4 cut(s) | 44, 451, 461, 905 |
| Alw21I | GWGCWC | 1 cut(s) | 453 |
| Alw26I | GTCTC | 2 cut(s) | 181, 385 |
| AlwI | GGATC | 2 cut(s) | 440, 614 |
| AoxI | GGCC | 1 cut(s) | 718 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 294 |
| AspLEI | GCGC | 2 cut(s) | 560, 734 |
| AsuHPI | GGTGA | 1 cut(s) | 862 |
| BaeGI | GKGCMC | 1 cut(s) | 841 |
| BalI | TGGCCA | 1 cut(s) | 720 |
| BanI | GGYRCC | 1 cut(s) | 731 |
| BanII | GRGCYC | 1 cut(s) | 453 |
| BauI | CACGAG | 1 cut(s) | 855 |
| BbsI | GAAGAC | 3 cut(s) | 162, 365, 577 |
| Bbv12I | GWGCWC | 1 cut(s) | 453 |
| BccI | CCATC | 4 cut(s) | 104, 231, 385, 759 |
| BciT130I | CCWGG | 1 cut(s) | 20 |
| BciVI | GTATCC | 1 cut(s) | 595 |
| BcoDI | GTCTC | 2 cut(s) | 181, 385 |
| BcuI | ACTAGT | 1 cut(s) | 865 |
| BfaI | CTAG | 4 cut(s) | 15, 227, 866, 941 |
| BfmI | CTRYAG | 2 cut(s) | 423, 519 |
| BfoI | RGCGCY | 1 cut(s) | 735 |
| BfuI | GTATCC | 1 cut(s) | 595 |
| BglII | AGATCT | 1 cut(s) | 515 |
| Bme1390I | CCNGG | 1 cut(s) | 20 |
| BmgBI | CACGTC | 1 cut(s) | 25 |
| BmiI | GGNNCC | 1 cut(s) | 733 |
| BmrFI | CCNGG | 1 cut(s) | 20 |
| BpiI | GAAGAC | 3 cut(s) | 162, 365, 577 |
| BpuEI | CTTGAG | 1 cut(s) | 116 |
| BsaHI | GRCGYC | 2 cut(s) | 574, 732 |
| BsaI | GGTCTC | 1 cut(s) | 181 |
| BseBI | CCWGG | 1 cut(s) | 20 |
| BseGI | GGATG | 3 cut(s) | 99, 127, 489 |
| BseSI | GKGCMC | 1 cut(s) | 841 |
| Bsh1236I | CGCG | 1 cut(s) | 558 |
| BshFI | GGCC | 1 cut(s) | 720 |
| BshNI | GGYRCC | 1 cut(s) | 731 |
| BsiHKAI | GWGCWC | 1 cut(s) | 453 |
| BsmAI | GTCTC | 2 cut(s) | 181, 385 |
| BsmBI | CGTCTC | 1 cut(s) | 385 |
| BsnI | GGCC | 1 cut(s) | 720 |
| Bso31I | GGTCTC | 1 cut(s) | 181 |
| Bsp1286I | GDGCHC | 2 cut(s) | 453, 841 |
| Bsp143I | GATC | 5 cut(s) | 432, 515, 619, 925, 937 |
| BspANI | GGCC | 1 cut(s) | 720 |
| BspFNI | CGCG | 1 cut(s) | 558 |
| BspHI | TCATGA | 1 cut(s) | 445 |
| BspLI | GGNNCC | 1 cut(s) | 733 |
| BspMAI | CTGCAG | 1 cut(s) | 427 |
| BspPI | GGATC | 2 cut(s) | 440, 614 |
| BspT107I | GGYRCC | 1 cut(s) | 731 |
| BspTNI | GGTCTC | 1 cut(s) | 181 |
| BssMI | GATC | 5 cut(s) | 432, 515, 619, 925, 937 |
| BssNI | GRCGYC | 2 cut(s) | 574, 732 |
| BssSI | CACGAG | 1 cut(s) | 855 |
| Bst2BI | CACGAG | 1 cut(s) | 855 |
| Bst2UI | CCWGG | 1 cut(s) | 20 |
| Bst4CI | ACNGT | 1 cut(s) | 34 |
| Bst6I | CTCTTC | 1 cut(s) | 673 |
| BstACI | GRCGYC | 2 cut(s) | 574, 732 |
| BstC8I | GCNNGC | 1 cut(s) | 42 |
| BstDEI | CTNAG | 4 cut(s) | 73, 564, 596, 744 |
| BstF5I | GGATG | 3 cut(s) | 99, 127, 489 |
| BstFNI | CGCG | 1 cut(s) | 558 |
| BstH2I | RGCGCY | 1 cut(s) | 735 |
| BstHHI | GCGC | 2 cut(s) | 560, 734 |
| BstKTI | GATC | 5 cut(s) | 435, 518, 622, 928, 940 |
| BstMAI | GTCTC | 2 cut(s) | 181, 385 |
| BstMBI | GATC | 5 cut(s) | 432, 515, 619, 925, 937 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 56, 65, 86, 770, 902 |
| BstNI | CCWGG | 1 cut(s) | 20 |
| BstSCI | CCNGG | 1 cut(s) | 18 |
| BstSFI | CTRYAG | 2 cut(s) | 423, 519 |
| BstSLI | GKGCMC | 1 cut(s) | 841 |
| BstUI | CGCG | 1 cut(s) | 558 |
| BstV2I | GAAGAC | 3 cut(s) | 162, 365, 577 |
| BstX2I | RGATCY | 1 cut(s) | 515 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 728 |
| BstYI | RGATCY | 1 cut(s) | 515 |
| BsuI | GTATCC | 1 cut(s) | 595 |
| BsuRI | GGCC | 1 cut(s) | 720 |
| BtgZI | GCGATG | 1 cut(s) | 359 |
| BtrI | CACGTC | 1 cut(s) | 25 |
| BtsCI | GGATG | 3 cut(s) | 99, 127, 489 |
| Cac8I | GCNNGC | 1 cut(s) | 42 |
| CciI | TCATGA | 1 cut(s) | 445 |
| CfoI | GCGC | 2 cut(s) | 560, 734 |
| CseI | GACGC | 2 cut(s) | 582, 770 |
| CviAII | CATG | 4 cut(s) | 206, 446, 482, 722 |
| DdeI | CTNAG | 4 cut(s) | 73, 564, 596, 744 |
| DinI | GGCGCC | 1 cut(s) | 733 |
| DpnI | GATC | 5 cut(s) | 434, 517, 621, 927, 939 |
| DpnII | GATC | 5 cut(s) | 432, 515, 619, 925, 937 |
| DraIII | CACNNNGTG | 1 cut(s) | 913 |
| EaeI | YGGCCR | 1 cut(s) | 718 |
| Eam1104I | CTCTTC | 1 cut(s) | 673 |
| EarI | CTCTTC | 1 cut(s) | 673 |
| Ecl136II | GAGCTC | 1 cut(s) | 451 |
| Eco24I | GRGCYC | 1 cut(s) | 453 |
| Eco31I | GGTCTC | 1 cut(s) | 181 |
| Eco32I | GATATC | 1 cut(s) | 334 |
| Eco53kI | GAGCTC | 1 cut(s) | 451 |
| EcoICRI | GAGCTC | 1 cut(s) | 451 |
| EcoRII | CCWGG | 1 cut(s) | 18 |
| EcoRV | GATATC | 1 cut(s) | 334 |
| EcoT38I | GRGCYC | 1 cut(s) | 453 |
| EgeI | GGCGCC | 1 cut(s) | 733 |
| EheI | GGCGCC | 1 cut(s) | 733 |
| Esp3I | CGTCTC | 1 cut(s) | 385 |
| FaeI | CATG | 4 cut(s) | 209, 449, 485, 725 |
| FatI | CATG | 4 cut(s) | 205, 445, 481, 721 |
| FauNDI | CATATG | 1 cut(s) | 117 |
| FokI | GGATG | 3 cut(s) | 86, 134, 476 |
| FriOI | GRGCYC | 1 cut(s) | 453 |
| FspBI | CTAG | 4 cut(s) | 15, 227, 866, 941 |
| GlaI | GCGC | 2 cut(s) | 559, 733 |
| HaeII | RGCGCY | 1 cut(s) | 735 |
| HaeIII | GGCC | 1 cut(s) | 720 |
| HgaI | GACGC | 2 cut(s) | 582, 770 |
| HhaI | GCGC | 2 cut(s) | 560, 734 |
| Hin1I | GRCGYC | 2 cut(s) | 574, 732 |
| Hin1II | CATG | 4 cut(s) | 209, 449, 485, 725 |
| Hin6I | GCGC | 2 cut(s) | 558, 732 |
| HinP1I | GCGC | 2 cut(s) | 558, 732 |
| HincII | GTYRAC | 1 cut(s) | 686 |
| HindII | GTYRAC | 1 cut(s) | 686 |
| HinfI | GANTC | 5 cut(s) | 4, 109, 125, 209, 361 |
| HphI | GGTGA | 1 cut(s) | 862 |
| Hpy166II | GTNNAC | 1 cut(s) | 686 |
| Hpy188I | TCNGA | 3 cut(s) | 289, 540, 619 |
| Hpy188III | TCNNGA | 8 cut(s) | 221, 275, 446, 513, 609, 857, 929, 941 |
| Hpy8I | GTNNAC | 1 cut(s) | 686 |
| HpyAV | CCTTC | 3 cut(s) | 159, 382, 638 |
| HpyCH4III | ACNGT | 1 cut(s) | 34 |
| HpyCH4IV | ACGT | 3 cut(s) | 24, 201, 688 |
| HpyCH4V | TGCA | 1 cut(s) | 425 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 56, 65, 86, 770, 902 |
| HpyF3I | CTNAG | 4 cut(s) | 73, 564, 596, 744 |
| HpySE526I | ACGT | 3 cut(s) | 24, 201, 688 |
| Hsp92I | GRCGYC | 2 cut(s) | 574, 732 |
| Hsp92II | CATG | 4 cut(s) | 209, 449, 485, 725 |
| HspAI | GCGC | 2 cut(s) | 558, 732 |
| KasI | GGCGCC | 1 cut(s) | 731 |
| Kzo9I | GATC | 5 cut(s) | 432, 515, 619, 925, 937 |
| LmnI | GCTCC | 1 cut(s) | 458 |
| LpnPI | CCDG | 8 cut(s) | 5, 32, 175, 227, 234, 411, 594, 702 |
| MaeI | CTAG | 4 cut(s) | 15, 227, 866, 941 |
| MaeII | ACGT | 3 cut(s) | 24, 201, 688 |
| MaeIII | GTNAC | 2 cut(s) | 418, 868 |
| MalI | GATC | 5 cut(s) | 434, 517, 621, 927, 939 |
| MboI | GATC | 5 cut(s) | 432, 515, 619, 925, 937 |
| MflI | RGATCY | 1 cut(s) | 515 |
| MhlI | GDGCHC | 2 cut(s) | 453, 841 |
| MlsI | TGGCCA | 1 cut(s) | 720 |
| MluCI | AATT | 4 cut(s) | 317, 411, 508, 547 |
| MluNI | TGGCCA | 1 cut(s) | 720 |
| Mly113I | GGCGCC | 1 cut(s) | 732 |
| MlyI | GAGTC | 3 cut(s) | 103, 203, 355 |
| MnlI | CCTC | 7 cut(s) | 70, 257, 674, 694, 698, 724, 786 |
| Mox20I | TGGCCA | 1 cut(s) | 720 |
| MroXI | GAANNNNTTC | 1 cut(s) | 294 |
| MscI | TGGCCA | 1 cut(s) | 720 |
| MseI | TTAA | 3 cut(s) | 303, 311, 399 |
| MslI | CAYNNNNRTG | 6 cut(s) | 104, 120, 255, 494, 726, 756 |
| Msp20I | TGGCCA | 1 cut(s) | 720 |
| MspR9I | CCNGG | 1 cut(s) | 20 |
| MvaI | CCWGG | 1 cut(s) | 20 |
| MvnI | CGCG | 1 cut(s) | 558 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 56, 65, 86, 770, 902 |
| NarI | GGCGCC | 1 cut(s) | 732 |
| NdeI | CATATG | 1 cut(s) | 117 |
| NdeII | GATC | 5 cut(s) | 432, 515, 619, 925, 937 |
| NlaIII | CATG | 4 cut(s) | 209, 449, 485, 725 |
| NlaIV | GGNNCC | 1 cut(s) | 733 |
| NmuCI | GTSAC | 1 cut(s) | 868 |
| PagI | TCATGA | 1 cut(s) | 445 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 580 |
| PdmI | GAANNNNTTC | 1 cut(s) | 294 |
| PfeI | GAWTC | 2 cut(s) | 4, 125 |
| PleI | GAGTC | 3 cut(s) | 103, 203, 355 |
| PluTI | GGCGCC | 1 cut(s) | 735 |
| PpsI | GAGTC | 3 cut(s) | 103, 203, 355 |
| Psp124BI | GAGCTC | 1 cut(s) | 453 |
| Psp6I | CCWGG | 1 cut(s) | 18 |
| PspGI | CCWGG | 1 cut(s) | 18 |
| PspN4I | GGNNCC | 1 cut(s) | 733 |
| PstI | CTGCAG | 1 cut(s) | 427 |
| PsuI | RGATCY | 1 cut(s) | 515 |
| RseI | CAYNNNNRTG | 6 cut(s) | 104, 120, 255, 494, 726, 756 |
| SacI | GAGCTC | 1 cut(s) | 453 |
| SaqAI | TTAA | 3 cut(s) | 303, 311, 399 |
| Sau3AI | GATC | 5 cut(s) | 432, 515, 619, 925, 937 |
| SchI | GAGTC | 3 cut(s) | 103, 203, 355 |
| ScrFI | CCNGG | 1 cut(s) | 20 |
| SduI | GDGCHC | 2 cut(s) | 453, 841 |
| SfcI | CTRYAG | 2 cut(s) | 423, 519 |
| SfoI | GGCGCC | 1 cut(s) | 733 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 104, 120, 255, 494, 726, 756 |
| SmlI | CTYRAG | 2 cut(s) | 8, 131 |
| SmoI | CTYRAG | 2 cut(s) | 8, 131 |
| SpeI | ACTAGT | 1 cut(s) | 865 |
| Sse9I | AATT | 4 cut(s) | 317, 411, 508, 547 |
| SspDI | GGCGCC | 1 cut(s) | 731 |
| SspMI | CTAG | 4 cut(s) | 15, 227, 866, 941 |
| SstI | GAGCTC | 1 cut(s) | 453 |
| StyD4I | CCNGG | 1 cut(s) | 18 |
| TaaI | ACNGT | 1 cut(s) | 34 |
| TaiI | ACGT | 3 cut(s) | 27, 204, 691 |
| TaqI | TCGA | 3 cut(s) | 183, 409, 512 |
| TasI | AATT | 4 cut(s) | 317, 411, 508, 547 |
| TfiI | GAWTC | 2 cut(s) | 4, 125 |
| Tru1I | TTAA | 3 cut(s) | 303, 311, 399 |
| Tru9I | TTAA | 3 cut(s) | 303, 311, 399 |
| TseFI | GTSAC | 1 cut(s) | 868 |
| Tsp45I | GTSAC | 1 cut(s) | 868 |
| TspDTI | ATGAA | 4 cut(s) | 161, 165, 434, 479 |
| TspGWI | ACGGA | 2 cut(s) | 445, 685 |
| XbaI | TCTAGA | 1 cut(s) | 940 |
| XmnI | GAANNNNTTC | 1 cut(s) | 294 |
| XspI | CTAG | 4 cut(s) | 15, 227, 866, 941 |