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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 395 |
| AccIII | TCCGGA | 1 cut(s) | 402 |
| AciI | CCGC | 8 cut(s) | 79, 361, 381, 430, 440, 443, 570, 573 |
| AcoI | YGGCCR | 1 cut(s) | 605 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 614 |
| AgsI | TTSAA | 1 cut(s) | 376 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 483, 497 |
| AluI | AGCT | 4 cut(s) | 155, 161, 483, 497 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| Ama87I | CYCGRG | 2 cut(s) | 119, 492 |
| Aor13HI | TCCGGA | 1 cut(s) | 402 |
| AoxI | GGCC | 2 cut(s) | 543, 605 |
| ApeKI | GCWGC | 4 cut(s) | 179, 409, 537, 594 |
| AspLEI | GCGC | 2 cut(s) | 396, 419 |
| AspS9I | GGNCC | 2 cut(s) | 387, 544 |
| AsuC2I | CCSGG | 3 cut(s) | 385, 542, 615 |
| AvaI | CYCGRG | 2 cut(s) | 119, 492 |
| AvaII | GGWCC | 1 cut(s) | 387 |
| BbvI | GCAGC | 4 cut(s) | 191, 421, 549, 606 |
| BccI | CCATC | 3 cut(s) | 92, 218, 342 |
| BceAI | ACGGC | 1 cut(s) | 453 |
| BcnI | CCSGG | 3 cut(s) | 385, 542, 615 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BfaI | CTAG | 2 cut(s) | 126, 338 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 7 cut(s) | 180, 410, 441, 538, 571, 574, 595 |
| BlsI | GCNGC | 7 cut(s) | 181, 411, 442, 539, 572, 575, 596 |
| Bme1390I | CCNGG | 3 cut(s) | 385, 542, 615 |
| Bme18I | GGWCC | 1 cut(s) | 387 |
| BmeT110I | CYCGRG | 2 cut(s) | 119, 492 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 2 cut(s) | 387, 544 |
| BmiI | GGNNCC | 1 cut(s) | 546 |
| BmrFI | CCNGG | 3 cut(s) | 385, 542, 615 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BpuMI | CCSGG | 3 cut(s) | 385, 542, 615 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 2 cut(s) | 420, 614 |
| BsaWI | WCCGGW | 1 cut(s) | 402 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 614 |
| Bse1I | ACTGG | 3 cut(s) | 24, 49, 244 |
| BseAI | TCCGGA | 1 cut(s) | 402 |
| BseDI | CCNNGG | 2 cut(s) | 420, 614 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 312 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 614 |
| BseNI | ACTGG | 3 cut(s) | 24, 49, 244 |
| BseXI | GCAGC | 4 cut(s) | 191, 421, 549, 606 |
| BshFI | GGCC | 2 cut(s) | 545, 607 |
| BsiHKCI | CYCGRG | 2 cut(s) | 119, 492 |
| BsiSI | CCGG | 6 cut(s) | 385, 403, 542, 591, 604, 614 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 614 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| BsnI | GGCC | 2 cut(s) | 545, 607 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 2 cut(s) | 119, 492 |
| Bsp13I | TCCGGA | 1 cut(s) | 402 |
| BspACI | CCGC | 8 cut(s) | 79, 361, 381, 430, 440, 443, 570, 573 |
| BspANI | GGCC | 2 cut(s) | 545, 607 |
| BspEI | TCCGGA | 1 cut(s) | 402 |
| BspLI | GGNNCC | 1 cut(s) | 546 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 3 cut(s) | 24, 49, 244 |
| BssECI | CCNNGG | 2 cut(s) | 420, 614 |
| Bst4CI | ACNGT | 1 cut(s) | 453 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 1 cut(s) | 184 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 312 |
| BstHHI | GCGC | 2 cut(s) | 396, 419 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 446 |
| BstSCI | CCNGG | 3 cut(s) | 383, 540, 613 |
| BstV1I | GCAGC | 4 cut(s) | 191, 421, 549, 606 |
| BsuRI | GGCC | 2 cut(s) | 545, 607 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 312 |
| BtsI | GCAGTG | 1 cut(s) | 425 |
| BtsIMutI | CAGTG | 1 cut(s) | 425 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CfoI | GCGC | 2 cut(s) | 396, 419 |
| Cfr13I | GGNCC | 2 cut(s) | 387, 544 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 1 cut(s) | 518 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 1 cut(s) | 184 |
| EaeI | YGGCCR | 1 cut(s) | 605 |
| EciI | GGCGGA | 2 cut(s) | 68, 370 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 2 cut(s) | 56, 489 |
| Eco47I | GGWCC | 1 cut(s) | 387 |
| Eco88I | CYCGRG | 2 cut(s) | 119, 492 |
| EcoRV | GATATC | 2 cut(s) | 56, 489 |
| FaeI | CATG | 1 cut(s) | 521 |
| FaiI | YATR | 6 cut(s) | 113, 228, 230, 257, 354, 519 |
| FatI | CATG | 1 cut(s) | 517 |
| FauI | CCCGC | 1 cut(s) | 423 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 7 cut(s) | 180, 410, 441, 538, 571, 574, 595 |
| FokI | GGATG | 3 cut(s) | 197, 245, 299 |
| Fsp4HI | GCNGC | 7 cut(s) | 180, 410, 441, 538, 571, 574, 595 |
| FspBI | CTAG | 2 cut(s) | 126, 338 |
| FspI | TGCGCA | 1 cut(s) | 395 |
| GlaI | GCGC | 2 cut(s) | 395, 418 |
| GluI | GCNGC | 7 cut(s) | 180, 410, 441, 538, 571, 574, 595 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 2 cut(s) | 545, 607 |
| HapII | CCGG | 6 cut(s) | 385, 403, 542, 591, 604, 614 |
| HhaI | GCGC | 2 cut(s) | 396, 419 |
| Hin1II | CATG | 1 cut(s) | 521 |
| Hin6I | GCGC | 2 cut(s) | 394, 417 |
| HinP1I | GCGC | 2 cut(s) | 394, 417 |
| HincII | GTYRAC | 1 cut(s) | 463 |
| HindII | GTYRAC | 1 cut(s) | 463 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 4 cut(s) | 102, 115, 220, 320 |
| HpaI | GTTAAC | 1 cut(s) | 463 |
| HpaII | CCGG | 6 cut(s) | 385, 403, 542, 591, 604, 614 |
| Hpy166II | GTNNAC | 1 cut(s) | 463 |
| Hpy188III | TCNNGA | 6 cut(s) | 71, 119, 131, 332, 403, 492 |
| Hpy8I | GTNNAC | 1 cut(s) | 463 |
| HpyAV | CCTTC | 1 cut(s) | 523 |
| HpyCH4III | ACNGT | 1 cut(s) | 453 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 446 |
| HpyF3I | CTNAG | 1 cut(s) | 184 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92II | CATG | 1 cut(s) | 521 |
| HspAI | GCGC | 2 cut(s) | 394, 417 |
| Kpn2I | TCCGGA | 1 cut(s) | 402 |
| KspAI | GTTAAC | 1 cut(s) | 463 |
| LmnI | GCTCC | 2 cut(s) | 246, 534 |
| Lsp1109I | GCAGC | 4 cut(s) | 191, 421, 549, 606 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 2 cut(s) | 126, 338 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 1 cut(s) | 317 |
| MlyI | GAGTC | 2 cut(s) | 214, 314 |
| MnlI | CCTC | 5 cut(s) | 181, 269, 368, 399, 430 |
| MroI | TCCGGA | 1 cut(s) | 402 |
| MseI | TTAA | 1 cut(s) | 462 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| MspI | CCGG | 6 cut(s) | 385, 403, 542, 591, 604, 614 |
| MspR9I | CCNGG | 3 cut(s) | 385, 542, 615 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 197, 446 |
| NciI | CCSGG | 3 cut(s) | 385, 542, 615 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NlaIII | CATG | 1 cut(s) | 521 |
| NlaIV | GGNNCC | 1 cut(s) | 546 |
| NmeAIII | GCCGAG | 1 cut(s) | 401 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| NsbI | TGCGCA | 1 cut(s) | 395 |
| PaeR7I | CTCGAG | 2 cut(s) | 119, 492 |
| PfeI | GAWTC | 2 cut(s) | 102, 115 |
| PkrI | GCNGC | 7 cut(s) | 181, 411, 442, 539, 572, 575, 596 |
| PleI | GAGTC | 2 cut(s) | 214, 314 |
| PpsI | GAGTC | 2 cut(s) | 214, 314 |
| PspN4I | GGNNCC | 1 cut(s) | 546 |
| PspPI | GGNCC | 2 cut(s) | 387, 544 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SaqAI | TTAA | 1 cut(s) | 462 |
| SatI | GCNGC | 7 cut(s) | 180, 410, 441, 538, 571, 574, 595 |
| Sau96I | GGNCC | 2 cut(s) | 387, 544 |
| SchI | GAGTC | 2 cut(s) | 214, 314 |
| ScrFI | CCNGG | 3 cut(s) | 385, 542, 615 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 2 cut(s) | 119, 492 |
| SinI | GGWCC | 1 cut(s) | 387 |
| SlaI | CTCGAG | 2 cut(s) | 119, 492 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SmlI | CTYRAG | 4 cut(s) | 89, 119, 156, 492 |
| SmoI | CTYRAG | 4 cut(s) | 89, 119, 156, 492 |
| SsiI | CCGC | 8 cut(s) | 79, 361, 381, 430, 440, 443, 570, 573 |
| SspMI | CTAG | 2 cut(s) | 126, 338 |
| StyD4I | CCNGG | 3 cut(s) | 383, 540, 613 |
| TaaI | ACNGT | 1 cut(s) | 453 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 3 cut(s) | 120, 485, 493 |
| TauI | GCSGC | 3 cut(s) | 443, 573, 576 |
| TfiI | GAWTC | 2 cut(s) | 102, 115 |
| Tru1I | TTAA | 1 cut(s) | 462 |
| Tru9I | TTAA | 1 cut(s) | 462 |
| TscAI | CASTG | 1 cut(s) | 432 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 4 cut(s) | 179, 409, 537, 594 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 4 cut(s) | 17, 272, 276, 542 |
| TspGWI | ACGGA | 1 cut(s) | 305 |
| TspRI | CASTG | 1 cut(s) | 432 |
| VpaK11BI | GGWCC | 1 cut(s) | 387 |
| XhoI | CTCGAG | 2 cut(s) | 119, 492 |
| XspI | CTAG | 2 cut(s) | 126, 338 |