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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 198 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 306 |
| AatII | GACGTC | 1 cut(s) | 663 |
| AccB1I | GGYRCC | 3 cut(s) | 419, 440, 461 |
| AccBSI | CCGCTC | 1 cut(s) | 271 |
| AciI | CCGC | 7 cut(s) | 100, 271, 319, 340, 353, 456, 714 |
| AclWI | GGATC | 2 cut(s) | 131, 541 |
| AcuI | CTGAAG | 1 cut(s) | 126 |
| AcvI | CACGTG | 2 cut(s) | 362, 380 |
| AcyI | GRCGYC | 2 cut(s) | 420, 660 |
| AdeI | CACNNNGTG | 1 cut(s) | 365 |
| AfaI | GTAC | 1 cut(s) | 626 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 257, 258, 328, 381, 410, 475 |
| AflIII | ACRYGT | 3 cut(s) | 359, 377, 525 |
| AgsI | TTSAA | 4 cut(s) | 204, 553, 585, 685 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 23 |
| AjnI | CCWGG | 1 cut(s) | 403 |
| AluBI | AGCT | 4 cut(s) | 40, 142, 164, 581 |
| AluI | AGCT | 4 cut(s) | 40, 142, 164, 581 |
| Alw21I | GWGCWC | 1 cut(s) | 705 |
| Alw26I | GTCTC | 2 cut(s) | 597, 651 |
| Alw44I | GTGCAC | 1 cut(s) | 701 |
| AlwI | GGATC | 2 cut(s) | 131, 541 |
| AoxI | GGCC | 1 cut(s) | 206 |
| ApaLI | GTGCAC | 1 cut(s) | 701 |
| AspA2I | CCTAGG | 1 cut(s) | 473 |
| AspLEI | GCGC | 2 cut(s) | 264, 422 |
| AspS9I | GGNCC | 2 cut(s) | 207, 308 |
| AsuHPI | GGTGA | 3 cut(s) | 425, 661, 701 |
| AvaII | GGWCC | 1 cut(s) | 308 |
| AvrII | CCTAGG | 1 cut(s) | 473 |
| AxyI | CCTNAGG | 1 cut(s) | 608 |
| BaeGI | GKGCMC | 1 cut(s) | 705 |
| BanI | GGYRCC | 3 cut(s) | 419, 440, 461 |
| BauI | CACGAG | 3 cut(s) | 127, 185, 429 |
| BbrPI | CACGTG | 2 cut(s) | 362, 380 |
| Bbv12I | GWGCWC | 1 cut(s) | 705 |
| BccI | CCATC | 2 cut(s) | 410, 647 |
| BciT130I | CCWGG | 1 cut(s) | 405 |
| BciVI | GTATCC | 2 cut(s) | 349, 410 |
| BclI | TGATCA | 1 cut(s) | 541 |
| BcoDI | GTCTC | 2 cut(s) | 597, 651 |
| BfaI | CTAG | 2 cut(s) | 474, 578 |
| BfmI | CTRYAG | 1 cut(s) | 159 |
| BfoI | RGCGCY | 1 cut(s) | 423 |
| BfuI | GTATCC | 2 cut(s) | 349, 410 |
| BisI | GCNGC | 1 cut(s) | 714 |
| BlnI | CCTAGG | 1 cut(s) | 473 |
| BlsI | GCNGC | 1 cut(s) | 715 |
| Bme1390I | CCNGG | 1 cut(s) | 405 |
| Bme18I | GGWCC | 1 cut(s) | 308 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 23 |
| BmgT120I | GGNCC | 2 cut(s) | 207, 308 |
| BmiI | GGNNCC | 5 cut(s) | 275, 309, 421, 442, 463 |
| BmrFI | CCNGG | 1 cut(s) | 405 |
| BsaAI | YACGTR | 2 cut(s) | 362, 380 |
| BsaHI | GRCGYC | 2 cut(s) | 420, 660 |
| BsaI | GGTCTC | 1 cut(s) | 597 |
| BsaJI | CCNNGG | 3 cut(s) | 403, 444, 473 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 376, 406, 454, 484 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 257, 258, 328, 381, 410, 475 |
| Bse21I | CCTNAGG | 1 cut(s) | 608 |
| Bse3DI | GCAATG | 1 cut(s) | 563 |
| BseBI | CCWGG | 1 cut(s) | 405 |
| BseDI | CCNNGG | 3 cut(s) | 403, 444, 473 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 257, 258, 328, 381, 410, 475 |
| BseMI | GCAATG | 1 cut(s) | 563 |
| BseMII | CTCAG | 2 cut(s) | 156, 599 |
| BseSI | GKGCMC | 1 cut(s) | 705 |
| BshFI | GGCC | 1 cut(s) | 208 |
| BshNI | GGYRCC | 3 cut(s) | 419, 440, 461 |
| BsiHKAI | GWGCWC | 1 cut(s) | 705 |
| BslFI | GGGAC | 1 cut(s) | 312 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 257, 258, 328, 381, 410, 475 |
| BsmAI | GTCTC | 2 cut(s) | 597, 651 |
| BsmBI | CGTCTC | 1 cut(s) | 651 |
| BsmFI | GGGAC | 1 cut(s) | 312 |
| BsmI | GAATGC | 1 cut(s) | 715 |
| BsnI | GGCC | 1 cut(s) | 208 |
| Bso31I | GGTCTC | 1 cut(s) | 597 |
| Bsp1286I | GDGCHC | 1 cut(s) | 705 |
| Bsp143I | GATC | 3 cut(s) | 123, 533, 541 |
| Bsp19I | CCATGG | 1 cut(s) | 444 |
| BspACI | CCGC | 7 cut(s) | 100, 271, 319, 340, 353, 456, 714 |
| BspANI | GGCC | 1 cut(s) | 208 |
| BspCNI | CTCAG | 2 cut(s) | 157, 600 |
| BspHI | TCATGA | 1 cut(s) | 229 |
| BspLI | GGNNCC | 5 cut(s) | 275, 309, 421, 442, 463 |
| BspPI | GGATC | 2 cut(s) | 131, 541 |
| BspT107I | GGYRCC | 3 cut(s) | 419, 440, 461 |
| BspTNI | GGTCTC | 1 cut(s) | 597 |
| BsrBI | CCGCTC | 1 cut(s) | 271 |
| BsrDI | GCAATG | 1 cut(s) | 563 |
| BssECI | CCNNGG | 3 cut(s) | 403, 444, 473 |
| BssMI | GATC | 3 cut(s) | 123, 533, 541 |
| BssNI | GRCGYC | 2 cut(s) | 420, 660 |
| BssSI | CACGAG | 3 cut(s) | 127, 185, 429 |
| BssT1I | CCWWGG | 2 cut(s) | 444, 473 |
| Bst2BI | CACGAG | 3 cut(s) | 127, 185, 429 |
| Bst2UI | CCWGG | 1 cut(s) | 405 |
| BstACI | GRCGYC | 2 cut(s) | 420, 660 |
| BstBAI | YACGTR | 2 cut(s) | 362, 380 |
| BstC8I | GCNNGC | 2 cut(s) | 568, 572 |
| BstDEI | CTNAG | 4 cut(s) | 165, 219, 279, 608 |
| BstDSI | CCRYGG | 1 cut(s) | 444 |
| BstH2I | RGCGCY | 1 cut(s) | 423 |
| BstHHI | GCGC | 2 cut(s) | 264, 422 |
| BstKTI | GATC | 3 cut(s) | 126, 536, 544 |
| BstMAI | GTCTC | 2 cut(s) | 597, 651 |
| BstMBI | GATC | 3 cut(s) | 123, 533, 541 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 268, 567 |
| BstNI | CCWGG | 1 cut(s) | 405 |
| BstNSI | RCATGY | 1 cut(s) | 529 |
| BstSCI | CCNGG | 1 cut(s) | 403 |
| BstSFI | CTRYAG | 1 cut(s) | 159 |
| BstSLI | GKGCMC | 1 cut(s) | 705 |
| Bsu36I | CCTNAGG | 1 cut(s) | 608 |
| BsuI | GTATCC | 2 cut(s) | 349, 410 |
| BsuRI | GGCC | 1 cut(s) | 208 |
| BtgI | CCRYGG | 1 cut(s) | 444 |
| BtsIMutI | CAGTG | 1 cut(s) | 102 |
| Cac8I | GCNNGC | 2 cut(s) | 568, 572 |
| CciI | TCATGA | 1 cut(s) | 229 |
| CfoI | GCGC | 2 cut(s) | 264, 422 |
| Cfr13I | GGNCC | 2 cut(s) | 207, 308 |
| Csp6I | GTAC | 1 cut(s) | 625 |
| CviAII | CATG | 6 cut(s) | 173, 230, 410, 424, 445, 526 |
| CviJI | RGCY | 6 cut(s) | 40, 77, 142, 164, 208, 581 |
| CviKI_1 | RGCY | 6 cut(s) | 40, 77, 142, 164, 208, 581 |
| CviQI | GTAC | 1 cut(s) | 625 |
| DdeI | CTNAG | 4 cut(s) | 165, 219, 279, 608 |
| DinI | GGCGCC | 1 cut(s) | 421 |
| DpnI | GATC | 3 cut(s) | 125, 535, 543 |
| DpnII | GATC | 3 cut(s) | 123, 533, 541 |
| DraIII | CACNNNGTG | 1 cut(s) | 365 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 306 |
| DriI | GACNNNNNGTC | 1 cut(s) | 23 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 306 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 2 cut(s) | 444, 473 |
| Eco31I | GGTCTC | 1 cut(s) | 597 |
| Eco47I | GGWCC | 1 cut(s) | 308 |
| Eco57I | CTGAAG | 1 cut(s) | 126 |
| Eco72I | CACGTG | 2 cut(s) | 362, 380 |
| Eco81I | CCTNAGG | 1 cut(s) | 608 |
| EcoRII | CCWGG | 1 cut(s) | 403 |
| EcoT14I | CCWWGG | 2 cut(s) | 444, 473 |
| EgeI | GGCGCC | 1 cut(s) | 421 |
| EheI | GGCGCC | 1 cut(s) | 421 |
| ErhI | CCWWGG | 2 cut(s) | 444, 473 |
| Esp3I | CGTCTC | 1 cut(s) | 651 |
| FaeI | CATG | 6 cut(s) | 176, 233, 413, 427, 448, 529 |
| FaqI | GGGAC | 1 cut(s) | 312 |
| FatI | CATG | 6 cut(s) | 172, 229, 409, 423, 444, 525 |
| FbaI | TGATCA | 1 cut(s) | 541 |
| Fnu4HI | GCNGC | 1 cut(s) | 714 |
| Fsp4HI | GCNGC | 1 cut(s) | 714 |
| FspBI | CTAG | 2 cut(s) | 474, 578 |
| GlaI | GCGC | 2 cut(s) | 263, 421 |
| GluI | GCNGC | 1 cut(s) | 714 |
| HaeII | RGCGCY | 1 cut(s) | 423 |
| HaeIII | GGCC | 1 cut(s) | 208 |
| HhaI | GCGC | 2 cut(s) | 264, 422 |
| Hin1I | GRCGYC | 2 cut(s) | 420, 660 |
| Hin1II | CATG | 6 cut(s) | 176, 233, 413, 427, 448, 529 |
| Hin6I | GCGC | 2 cut(s) | 262, 420 |
| HinP1I | GCGC | 2 cut(s) | 262, 420 |
| HinfI | GANTC | 1 cut(s) | 427 |
| HphI | GGTGA | 3 cut(s) | 425, 661, 701 |
| Hpy166II | GTNNAC | 3 cut(s) | 17, 625, 703 |
| Hpy188III | TCNNGA | 4 cut(s) | 127, 187, 230, 585 |
| Hpy8I | GTNNAC | 3 cut(s) | 17, 625, 703 |
| HpyAV | CCTTC | 2 cut(s) | 73, 326 |
| HpyCH4IV | ACGT | 6 cut(s) | 301, 361, 379, 490, 627, 660 |
| HpyCH4V | TGCA | 5 cut(s) | 248, 494, 561, 632, 703 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 268, 567 |
| HpyF3I | CTNAG | 4 cut(s) | 165, 219, 279, 608 |
| HpySE526I | ACGT | 6 cut(s) | 301, 361, 379, 490, 627, 660 |
| Hsp92I | GRCGYC | 2 cut(s) | 420, 660 |
| Hsp92II | CATG | 6 cut(s) | 176, 233, 413, 427, 448, 529 |
| HspAI | GCGC | 2 cut(s) | 262, 420 |
| KasI | GGCGCC | 1 cut(s) | 419 |
| Ksp22I | TGATCA | 1 cut(s) | 541 |
| Kzo9I | GATC | 3 cut(s) | 123, 533, 541 |
| LmnI | GCTCC | 2 cut(s) | 268, 613 |
| LpnPI | CCDG | 6 cut(s) | 102, 390, 417, 577, 620, 685 |
| MaeI | CTAG | 2 cut(s) | 474, 578 |
| MaeII | ACGT | 6 cut(s) | 301, 361, 379, 490, 627, 660 |
| MaeIII | GTNAC | 2 cut(s) | 25, 689 |
| MalI | GATC | 3 cut(s) | 125, 535, 543 |
| MbiI | CCGCTC | 1 cut(s) | 271 |
| MboI | GATC | 3 cut(s) | 123, 533, 541 |
| MboII | GAAGA | 3 cut(s) | 650, 653, 656 |
| MhlI | GDGCHC | 1 cut(s) | 705 |
| MluCI | AATT | 5 cut(s) | 42, 193, 199, 238, 500 |
| Mly113I | GGCGCC | 1 cut(s) | 420 |
| MlyI | GAGTC | 1 cut(s) | 421 |
| MseI | TTAA | 1 cut(s) | 503 |
| MslI | CAYNNNNRTG | 3 cut(s) | 185, 414, 708 |
| MspR9I | CCNGG | 1 cut(s) | 405 |
| Mva1269I | GAATGC | 1 cut(s) | 715 |
| MvaI | CCWGG | 1 cut(s) | 405 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 268, 567 |
| NarI | GGCGCC | 1 cut(s) | 420 |
| NcoI | CCATGG | 1 cut(s) | 444 |
| NdeII | GATC | 3 cut(s) | 123, 533, 541 |
| NlaIII | CATG | 6 cut(s) | 176, 233, 413, 427, 448, 529 |
| NlaIV | GGNNCC | 5 cut(s) | 275, 309, 421, 442, 463 |
| NmuCI | GTSAC | 2 cut(s) | 25, 689 |
| NspI | RCATGY | 1 cut(s) | 529 |
| PagI | TCATGA | 1 cut(s) | 229 |
| PciI | ACATGT | 1 cut(s) | 525 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 487 |
| PctI | GAATGC | 1 cut(s) | 715 |
| PkrI | GCNGC | 1 cut(s) | 715 |
| PleI | GAGTC | 1 cut(s) | 421 |
| PluTI | GGCGCC | 1 cut(s) | 423 |
| PmaCI | CACGTG | 2 cut(s) | 362, 380 |
| PmlI | CACGTG | 2 cut(s) | 362, 380 |
| PpsI | GAGTC | 1 cut(s) | 421 |
| Ppu21I | YACGTR | 2 cut(s) | 362, 380 |
| PscI | ACATGT | 1 cut(s) | 525 |
| PsiI | TTATAA | 1 cut(s) | 198 |
| Psp6I | CCWGG | 1 cut(s) | 403 |
| PspCI | CACGTG | 2 cut(s) | 362, 380 |
| PspGI | CCWGG | 1 cut(s) | 403 |
| PspN4I | GGNNCC | 5 cut(s) | 275, 309, 421, 442, 463 |
| PspPI | GGNCC | 2 cut(s) | 207, 308 |
| RsaI | GTAC | 1 cut(s) | 626 |
| RsaNI | GTAC | 1 cut(s) | 625 |
| RseI | CAYNNNNRTG | 3 cut(s) | 185, 414, 708 |
| SaqAI | TTAA | 1 cut(s) | 503 |
| SatI | GCNGC | 1 cut(s) | 714 |
| Sau3AI | GATC | 3 cut(s) | 123, 533, 541 |
| Sau96I | GGNCC | 2 cut(s) | 207, 308 |
| SchI | GAGTC | 1 cut(s) | 421 |
| ScrFI | CCNGG | 1 cut(s) | 405 |
| SduI | GDGCHC | 1 cut(s) | 705 |
| SfcI | CTRYAG | 1 cut(s) | 159 |
| SfoI | GGCGCC | 1 cut(s) | 421 |
| SinI | GGWCC | 1 cut(s) | 308 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 185, 414, 708 |
| Sse9I | AATT | 5 cut(s) | 42, 193, 199, 238, 500 |
| SsiI | CCGC | 7 cut(s) | 100, 271, 319, 340, 353, 456, 714 |
| SspDI | GGCGCC | 1 cut(s) | 419 |
| SspMI | CTAG | 2 cut(s) | 474, 578 |
| StyD4I | CCNGG | 1 cut(s) | 403 |
| StyI | CCWWGG | 2 cut(s) | 444, 473 |
| TaiI | ACGT | 6 cut(s) | 304, 364, 382, 493, 630, 663 |
| TasI | AATT | 5 cut(s) | 42, 193, 199, 238, 500 |
| TauI | GCSGC | 1 cut(s) | 716 |
| Tru1I | TTAA | 1 cut(s) | 503 |
| Tru9I | TTAA | 1 cut(s) | 503 |
| TscAI | CASTG | 1 cut(s) | 109 |
| TseFI | GTSAC | 2 cut(s) | 25, 689 |
| Tsp45I | GTSAC | 2 cut(s) | 25, 689 |
| TspDTI | ATGAA | 3 cut(s) | 125, 218, 711 |
| TspGWI | ACGGA | 1 cut(s) | 136 |
| TspRI | CASTG | 1 cut(s) | 109 |
| VneI | GTGCAC | 1 cut(s) | 701 |
| VpaK11BI | GGWCC | 1 cut(s) | 308 |
| XceI | RCATGY | 1 cut(s) | 529 |
| XmaJI | CCTAGG | 1 cut(s) | 473 |
| XspI | CTAG | 2 cut(s) | 474, 578 |
| ZraI | GACGTC | 1 cut(s) | 661 |