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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 729 |
| AciI | CCGC | 1 cut(s) | 79 |
| AclWI | GGATC | 1 cut(s) | 621 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 680 |
| AgsI | TTSAA | 1 cut(s) | 376 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AleI | CACNNNNGTG | 1 cut(s) | 366 |
| AluBI | AGCT | 3 cut(s) | 155, 161, 562 |
| AluI | AGCT | 3 cut(s) | 155, 161, 562 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 2 cut(s) | 292, 496 |
| AlwI | GGATC | 1 cut(s) | 621 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspS9I | GGNCC | 1 cut(s) | 731 |
| AsuHPI | GGTGA | 1 cut(s) | 755 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 731 |
| BanII | GRGCYC | 2 cut(s) | 50, 564 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 1 cut(s) | 342 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 515, 549 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 2 cut(s) | 292, 496 |
| BfaI | CTAG | 1 cut(s) | 338 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 731 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 731 |
| BmiI | GGNNCC | 2 cut(s) | 571, 686 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmrI | ACTGGG | 1 cut(s) | 238 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BmuI | ACTGGG | 1 cut(s) | 238 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpuEI | CTTGAG | 1 cut(s) | 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 2 cut(s) | 96, 630 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 680 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 2 cut(s) | 96, 630 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 600 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 680 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslFI | GGGAC | 1 cut(s) | 649 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 680 |
| BsmAI | GTCTC | 2 cut(s) | 292, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsmFI | GGGAC | 1 cut(s) | 649 |
| BsmI | GAATGC | 1 cut(s) | 497 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 50, 564 |
| Bsp143I | GATC | 2 cut(s) | 444, 626 |
| BspACI | CCGC | 1 cut(s) | 79 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 2 cut(s) | 571, 686 |
| BspPI | GGATC | 1 cut(s) | 621 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssECI | CCNNGG | 2 cut(s) | 96, 630 |
| BssMI | GATC | 2 cut(s) | 444, 626 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 510 |
| BstDSI | CCRYGG | 1 cut(s) | 630 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 600 |
| BstKTI | GATC | 2 cut(s) | 447, 629 |
| BstMAI | GTCTC | 2 cut(s) | 292, 496 |
| BstMBI | GATC | 2 cut(s) | 444, 626 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtgI | CCRYGG | 1 cut(s) | 630 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 600 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 556 |
| Cfr13I | GGNCC | 1 cut(s) | 731 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 5 cut(s) | 412, 502, 557, 574, 593 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 2 cut(s) | 184, 510 |
| DpnI | GATC | 2 cut(s) | 446, 628 |
| DpnII | GATC | 2 cut(s) | 444, 626 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 729 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 729 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco24I | GRGCYC | 2 cut(s) | 50, 564 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 731 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT38I | GRGCYC | 2 cut(s) | 50, 564 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 5 cut(s) | 415, 505, 560, 577, 596 |
| FaqI | GGGAC | 1 cut(s) | 649 |
| FatI | CATG | 5 cut(s) | 411, 501, 556, 573, 592 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 197, 245, 587 |
| FriOI | GRGCYC | 2 cut(s) | 50, 564 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 1 cut(s) | 338 |
| GluI | GCNGC | 1 cut(s) | 180 |
| Hin1II | CATG | 5 cut(s) | 415, 505, 560, 577, 596 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 9 cut(s) | 102, 115, 220, 236, 320, 472, 522, 543, 653 |
| HphI | GGTGA | 1 cut(s) | 755 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 400, 652 |
| Hpy188III | TCNNGA | 6 cut(s) | 71, 119, 332, 386, 557, 624 |
| HpyAV | CCTTC | 2 cut(s) | 270, 749 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 312 |
| HpyCH4V | TGCA | 2 cut(s) | 497, 536 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 510 |
| HpySE526I | ACGT | 2 cut(s) | 135, 312 |
| Hsp92II | CATG | 5 cut(s) | 415, 505, 560, 577, 596 |
| Kzo9I | GATC | 2 cut(s) | 444, 626 |
| LmnI | GCTCC | 3 cut(s) | 34, 569, 684 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 1 cut(s) | 338 |
| MaeII | ACGT | 2 cut(s) | 135, 312 |
| MaeIII | GTNAC | 4 cut(s) | 5, 317, 529, 665 |
| MalI | GATC | 2 cut(s) | 446, 628 |
| MboI | GATC | 2 cut(s) | 444, 626 |
| MboII | GAAGA | 5 cut(s) | 275, 278, 308, 481, 622 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MhlI | GDGCHC | 2 cut(s) | 50, 564 |
| MluCI | AATT | 3 cut(s) | 17, 619, 658 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 466 |
| MnlI | CCTC | 5 cut(s) | 91, 135, 181, 368, 674 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 1 cut(s) | 422 |
| MslI | CAYNNNNRTG | 5 cut(s) | 90, 215, 231, 366, 605 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| Mva1269I | GAATGC | 1 cut(s) | 497 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 2 cut(s) | 444, 626 |
| NlaIII | CATG | 5 cut(s) | 415, 505, 560, 577, 596 |
| NlaIV | GGNNCC | 2 cut(s) | 571, 686 |
| NmeAIII | GCCGAG | 1 cut(s) | 121 |
| NmuCI | GTSAC | 2 cut(s) | 317, 665 |
| OliI | CACNNNNGTG | 1 cut(s) | 366 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PctI | GAATGC | 1 cut(s) | 497 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 6 cut(s) | 102, 115, 236, 522, 543, 653 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 466 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 466 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 2 cut(s) | 571, 686 |
| PspPI | GGNCC | 1 cut(s) | 731 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 5 cut(s) | 90, 215, 231, 366, 605 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 1 cut(s) | 422 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 2 cut(s) | 444, 626 |
| Sau96I | GGNCC | 1 cut(s) | 731 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 466 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 2 cut(s) | 50, 564 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 731 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 90, 215, 231, 366, 605 |
| SmlI | CTYRAG | 2 cut(s) | 119, 156 |
| SmoI | CTYRAG | 2 cut(s) | 119, 156 |
| Sse9I | AATT | 3 cut(s) | 17, 619, 658 |
| SsiI | CCGC | 1 cut(s) | 79 |
| SspMI | CTAG | 1 cut(s) | 338 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 138, 315 |
| TaqI | TCGA | 5 cut(s) | 120, 294, 520, 525, 623 |
| TasI | AATT | 3 cut(s) | 17, 619, 658 |
| TfiI | GAWTC | 6 cut(s) | 102, 115, 236, 522, 543, 653 |
| Tru1I | TTAA | 1 cut(s) | 422 |
| Tru9I | TTAA | 1 cut(s) | 422 |
| TseFI | GTSAC | 2 cut(s) | 317, 665 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 2 cut(s) | 317, 665 |
| TspDTI | ATGAA | 6 cut(s) | 272, 276, 428, 490, 545, 590 |
| TspGWI | ACGGA | 2 cut(s) | 305, 619 |
| VpaK11BI | GGWCC | 1 cut(s) | 731 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 1 cut(s) | 338 |