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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 106, 406, 630 |
| AclWI | GGATC | 1 cut(s) | 366 |
| AcoI | YGGCCR | 1 cut(s) | 472 |
| AdeI | CACNNNGTG | 1 cut(s) | 670 |
| AgsI | TTSAA | 2 cut(s) | 121, 332 |
| AjnI | CCWGG | 1 cut(s) | 546 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 5 cut(s) | 307, 317, 504, 611, 662 |
| AluI | AGCT | 5 cut(s) | 307, 317, 504, 611, 662 |
| Alw21I | GWGCWC | 2 cut(s) | 309, 613 |
| Alw26I | GTCTC | 2 cut(s) | 37, 241 |
| AlwI | GGATC | 1 cut(s) | 366 |
| AoxI | GGCC | 1 cut(s) | 472 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AsuHPI | GGTGA | 1 cut(s) | 619 |
| BaeGI | GKGCMC | 1 cut(s) | 598 |
| BalI | TGGCCA | 1 cut(s) | 474 |
| BanII | GRGCYC | 2 cut(s) | 309, 613 |
| BauI | CACGAG | 1 cut(s) | 612 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| Bbv12I | GWGCWC | 2 cut(s) | 309, 613 |
| BbvCI | CCTCAGC | 2 cut(s) | 537, 558 |
| BccI | CCATC | 1 cut(s) | 87 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 260, 294, 515, 549 |
| BciT130I | CCWGG | 1 cut(s) | 548 |
| BclI | TGATCA | 1 cut(s) | 586 |
| BcoDI | GTCTC | 2 cut(s) | 37, 241 |
| BfaI | CTAG | 3 cut(s) | 18, 83, 698 |
| Bme1390I | CCNGG | 1 cut(s) | 548 |
| BmiI | GGNNCC | 1 cut(s) | 428 |
| BmrFI | CCNGG | 1 cut(s) | 548 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| Bpu10I | CCTNAGC | 2 cut(s) | 537, 558 |
| BpuEI | CTTGAG | 1 cut(s) | 504 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 1 cut(s) | 375 |
| BseBI | CCWGG | 1 cut(s) | 548 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseDI | CCNNGG | 1 cut(s) | 375 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseMII | CTCAG | 2 cut(s) | 528, 572 |
| BseSI | GKGCMC | 1 cut(s) | 598 |
| BshFI | GGCC | 1 cut(s) | 474 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 2 cut(s) | 309, 613 |
| BsmAI | GTCTC | 2 cut(s) | 37, 241 |
| BsmBI | CGTCTC | 1 cut(s) | 241 |
| BsnI | GGCC | 1 cut(s) | 474 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 3 cut(s) | 309, 598, 613 |
| Bsp143I | GATC | 5 cut(s) | 189, 371, 586, 682, 694 |
| BspACI | CCGC | 3 cut(s) | 106, 406, 630 |
| BspANI | GGCC | 1 cut(s) | 474 |
| BspCNI | CTCAG | 2 cut(s) | 529, 571 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 1 cut(s) | 428 |
| BspPI | GGATC | 1 cut(s) | 366 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BssECI | CCNNGG | 1 cut(s) | 375 |
| BssMI | GATC | 5 cut(s) | 189, 371, 586, 682, 694 |
| BssSI | CACGAG | 1 cut(s) | 612 |
| Bst2BI | CACGAG | 1 cut(s) | 612 |
| Bst2UI | CCWGG | 1 cut(s) | 548 |
| Bst6I | CTCTTC | 1 cut(s) | 427 |
| BstDEI | CTNAG | 4 cut(s) | 255, 498, 537, 558 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstEII | GGTNACC | 1 cut(s) | 401 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstKTI | GATC | 5 cut(s) | 192, 374, 589, 685, 697 |
| BstMAI | GTCTC | 2 cut(s) | 37, 241 |
| BstMBI | GATC | 5 cut(s) | 189, 371, 586, 682, 694 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 548, 638, 659 |
| BstNI | CCWGG | 1 cut(s) | 548 |
| BstPI | GGTNACC | 1 cut(s) | 401 |
| BstSCI | CCNGG | 1 cut(s) | 546 |
| BstSLI | GKGCMC | 1 cut(s) | 598 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| BstX2I | RGATCY | 1 cut(s) | 371 |
| BstYI | RGATCY | 1 cut(s) | 371 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuRI | GGCC | 1 cut(s) | 474 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| CciI | TCATGA | 1 cut(s) | 301 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CviAII | CATG | 3 cut(s) | 302, 338, 476 |
| DdeI | CTNAG | 4 cut(s) | 255, 498, 537, 558 |
| DpnI | GATC | 5 cut(s) | 191, 373, 588, 684, 696 |
| DpnII | GATC | 5 cut(s) | 189, 371, 586, 682, 694 |
| DraI | TTTAAA | 1 cut(s) | 568 |
| DraIII | CACNNNGTG | 1 cut(s) | 670 |
| EaeI | YGGCCR | 1 cut(s) | 472 |
| Eam1104I | CTCTTC | 1 cut(s) | 427 |
| EarI | CTCTTC | 1 cut(s) | 427 |
| Ecl136II | GAGCTC | 2 cut(s) | 307, 611 |
| Eco24I | GRGCYC | 2 cut(s) | 309, 613 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 2 cut(s) | 307, 611 |
| Eco91I | GGTNACC | 1 cut(s) | 401 |
| EcoICRI | GAGCTC | 2 cut(s) | 307, 611 |
| EcoO65I | GGTNACC | 1 cut(s) | 401 |
| EcoRII | CCWGG | 1 cut(s) | 546 |
| EcoT38I | GRGCYC | 2 cut(s) | 309, 613 |
| Esp3I | CGTCTC | 1 cut(s) | 241 |
| FaeI | CATG | 3 cut(s) | 305, 341, 479 |
| FatI | CATG | 3 cut(s) | 301, 337, 475 |
| FbaI | TGATCA | 1 cut(s) | 586 |
| FokI | GGATG | 1 cut(s) | 332 |
| FriOI | GRGCYC | 2 cut(s) | 309, 613 |
| FspBI | CTAG | 3 cut(s) | 18, 83, 698 |
| HaeIII | GGCC | 1 cut(s) | 474 |
| Hin1II | CATG | 3 cut(s) | 305, 341, 479 |
| HincII | GTYRAC | 1 cut(s) | 440 |
| HindII | GTYRAC | 1 cut(s) | 440 |
| HinfI | GANTC | 4 cut(s) | 65, 217, 267, 386 |
| HphI | GGTGA | 1 cut(s) | 619 |
| Hpy166II | GTNNAC | 2 cut(s) | 252, 440 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 586 |
| Hpy188III | TCNNGA | 7 cut(s) | 77, 131, 302, 369, 614, 686, 698 |
| Hpy8I | GTNNAC | 2 cut(s) | 252, 440 |
| HpyAV | CCTTC | 3 cut(s) | 15, 238, 392 |
| HpyCH4IV | ACGT | 3 cut(s) | 57, 442, 529 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 281 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 548, 638, 659 |
| HpyF3I | CTNAG | 4 cut(s) | 255, 498, 537, 558 |
| HpySE526I | ACGT | 3 cut(s) | 57, 442, 529 |
| Hsp92II | CATG | 3 cut(s) | 305, 341, 479 |
| Ksp22I | TGATCA | 1 cut(s) | 586 |
| Kzo9I | GATC | 5 cut(s) | 189, 371, 586, 682, 694 |
| LmnI | GCTCC | 1 cut(s) | 314 |
| LpnPI | CCDG | 5 cut(s) | 83, 90, 456, 533, 560 |
| MaeI | CTAG | 3 cut(s) | 18, 83, 698 |
| MaeII | ACGT | 3 cut(s) | 57, 442, 529 |
| MaeIII | GTNAC | 5 cut(s) | 62, 274, 401, 461, 625 |
| MalI | GATC | 5 cut(s) | 191, 373, 588, 684, 696 |
| MboI | GATC | 5 cut(s) | 189, 371, 586, 682, 694 |
| MboII | GAAGA | 8 cut(s) | 23, 53, 226, 367, 444, 629, 692, 701 |
| MflI | RGATCY | 1 cut(s) | 371 |
| MhlI | GDGCHC | 3 cut(s) | 309, 598, 613 |
| MlsI | TGGCCA | 1 cut(s) | 474 |
| MluCI | AATT | 2 cut(s) | 364, 620 |
| MluNI | TGGCCA | 1 cut(s) | 474 |
| MlyI | GAGTC | 3 cut(s) | 59, 211, 380 |
| MnlI | CCTC | 8 cut(s) | 113, 428, 448, 452, 478, 528, 532, 567 |
| Mox20I | TGGCCA | 1 cut(s) | 474 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MscI | TGGCCA | 1 cut(s) | 474 |
| MseI | TTAA | 3 cut(s) | 159, 167, 567 |
| MslI | CAYNNNNRTG | 1 cut(s) | 350 |
| Msp20I | TGGCCA | 1 cut(s) | 474 |
| MspR9I | CCNGG | 1 cut(s) | 548 |
| MvaI | CCWGG | 1 cut(s) | 548 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 548, 638, 659 |
| NdeII | GATC | 5 cut(s) | 189, 371, 586, 682, 694 |
| NlaIII | CATG | 3 cut(s) | 305, 341, 479 |
| NlaIV | GGNNCC | 1 cut(s) | 428 |
| NmuCI | GTSAC | 2 cut(s) | 62, 625 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 1 cut(s) | 267 |
| PleI | GAGTC | 3 cut(s) | 59, 211, 380 |
| PpsI | GAGTC | 3 cut(s) | 59, 211, 380 |
| Psp124BI | GAGCTC | 2 cut(s) | 309, 613 |
| Psp6I | CCWGG | 1 cut(s) | 546 |
| PspEI | GGTNACC | 1 cut(s) | 401 |
| PspGI | CCWGG | 1 cut(s) | 546 |
| PspN4I | GGNNCC | 1 cut(s) | 428 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 373, 405 |
| PsuI | RGATCY | 1 cut(s) | 371 |
| RseI | CAYNNNNRTG | 1 cut(s) | 350 |
| SacI | GAGCTC | 2 cut(s) | 309, 613 |
| SaqAI | TTAA | 3 cut(s) | 159, 167, 567 |
| Sau3AI | GATC | 5 cut(s) | 189, 371, 586, 682, 694 |
| SchI | GAGTC | 3 cut(s) | 59, 211, 380 |
| ScrFI | CCNGG | 1 cut(s) | 548 |
| SduI | GDGCHC | 3 cut(s) | 309, 598, 613 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 350 |
| SmlI | CTYRAG | 1 cut(s) | 519 |
| SmoI | CTYRAG | 1 cut(s) | 519 |
| Sse9I | AATT | 2 cut(s) | 364, 620 |
| SsiI | CCGC | 3 cut(s) | 106, 406, 630 |
| SspMI | CTAG | 3 cut(s) | 18, 83, 698 |
| SstI | GAGCTC | 2 cut(s) | 309, 613 |
| StyD4I | CCNGG | 1 cut(s) | 546 |
| TaiI | ACGT | 3 cut(s) | 60, 445, 532 |
| TaqI | TCGA | 4 cut(s) | 39, 265, 270, 368 |
| TasI | AATT | 2 cut(s) | 364, 620 |
| TfiI | GAWTC | 1 cut(s) | 267 |
| Tru1I | TTAA | 3 cut(s) | 159, 167, 567 |
| Tru9I | TTAA | 3 cut(s) | 159, 167, 567 |
| TseFI | GTSAC | 2 cut(s) | 62, 625 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 625 |
| TspDTI | ATGAA | 3 cut(s) | 17, 290, 335 |
| TspGWI | ACGGA | 2 cut(s) | 50, 364 |
| XbaI | TCTAGA | 1 cut(s) | 697 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 3 cut(s) | 18, 83, 698 |