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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 513 |
| AccB1I | GGYRCC | 1 cut(s) | 468 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 729 |
| AciI | CCGC | 2 cut(s) | 145, 768 |
| AcoI | YGGCCR | 1 cut(s) | 613 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 464, 729 |
| AgsI | TTSAA | 4 cut(s) | 160, 212, 371, 664 |
| AleI | CACNNNNGTG | 1 cut(s) | 236 |
| AluBI | AGCT | 4 cut(s) | 346, 356, 668, 749 |
| AluI | AGCT | 4 cut(s) | 346, 356, 668, 749 |
| Alw21I | GWGCWC | 3 cut(s) | 348, 457, 751 |
| Alw26I | GTCTC | 2 cut(s) | 76, 280 |
| AoxI | GGCC | 1 cut(s) | 613 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| AspLEI | GCGC | 1 cut(s) | 629 |
| AspS9I | GGNCC | 1 cut(s) | 515 |
| AsuHPI | GGTGA | 1 cut(s) | 757 |
| AvaII | GGWCC | 1 cut(s) | 515 |
| BaeGI | GKGCMC | 1 cut(s) | 736 |
| BalI | TGGCCA | 1 cut(s) | 615 |
| BanI | GGYRCC | 1 cut(s) | 468 |
| BanII | GRGCYC | 2 cut(s) | 348, 751 |
| BauI | CACGAG | 1 cut(s) | 750 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| Bbv12I | GWGCWC | 3 cut(s) | 348, 457, 751 |
| BccI | CCATC | 6 cut(s) | 126, 275, 280, 309, 533, 654 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 299, 333 |
| BciVI | GTATCC | 2 cut(s) | 490, 730 |
| BcoDI | GTCTC | 2 cut(s) | 76, 280 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BfmI | CTRYAG | 1 cut(s) | 318 |
| BfuI | GTATCC | 2 cut(s) | 490, 730 |
| Bme18I | GGWCC | 1 cut(s) | 515 |
| BmgT120I | GGNCC | 1 cut(s) | 515 |
| BmiI | GGNNCC | 2 cut(s) | 470, 569 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 464, 729 |
| Bse1I | ACTGG | 2 cut(s) | 28, 723 |
| Bse3DI | GCAATG | 1 cut(s) | 610 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseGI | GGATG | 4 cut(s) | 22, 267, 384, 544 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 464, 729 |
| BseMI | GCAATG | 1 cut(s) | 610 |
| BseMII | CTCAG | 1 cut(s) | 678 |
| BseNI | ACTGG | 2 cut(s) | 28, 723 |
| BseRI | GAGGAG | 1 cut(s) | 660 |
| BseSI | GKGCMC | 1 cut(s) | 736 |
| BshFI | GGCC | 1 cut(s) | 615 |
| BshNI | GGYRCC | 1 cut(s) | 468 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BsiHKAI | GWGCWC | 3 cut(s) | 348, 457, 751 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 464, 729 |
| BsmAI | GTCTC | 2 cut(s) | 76, 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsnI | GGCC | 1 cut(s) | 615 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 4 cut(s) | 348, 457, 736, 751 |
| BspACI | CCGC | 2 cut(s) | 145, 768 |
| BspANI | GGCC | 1 cut(s) | 615 |
| BspCNI | CTCAG | 1 cut(s) | 679 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 2 cut(s) | 470, 569 |
| BspMAI | CTGCAG | 1 cut(s) | 322 |
| BspT107I | GGYRCC | 1 cut(s) | 468 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrDI | GCAATG | 1 cut(s) | 610 |
| BsrI | ACTGG | 2 cut(s) | 28, 723 |
| BssSI | CACGAG | 1 cut(s) | 750 |
| Bst2BI | CACGAG | 1 cut(s) | 750 |
| Bst6I | CTCTTC | 1 cut(s) | 568 |
| BstDEI | CTNAG | 5 cut(s) | 294, 415, 491, 639, 687 |
| BstF5I | GGATG | 4 cut(s) | 22, 267, 384, 544 |
| BstHHI | GCGC | 1 cut(s) | 629 |
| BstMAI | GTCTC | 2 cut(s) | 76, 280 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 665, 776 |
| BstSFI | CTRYAG | 1 cut(s) | 318 |
| BstSLI | GKGCMC | 1 cut(s) | 736 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 623 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| BsuI | GTATCC | 2 cut(s) | 490, 730 |
| BsuRI | GGCC | 1 cut(s) | 615 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtsCI | GGATG | 4 cut(s) | 22, 267, 384, 544 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 1 cut(s) | 629 |
| Cfr13I | GGNCC | 1 cut(s) | 515 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| CseI | GACGC | 1 cut(s) | 665 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 3 cut(s) | 341, 377, 617 |
| CviJI | RGCY | 9 cut(s) | 64, 141, 346, 356, 549, 615, 645, 668, 749 |
| CviKI_1 | RGCY | 9 cut(s) | 64, 141, 346, 356, 549, 615, 645, 668, 749 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 5 cut(s) | 294, 415, 491, 639, 687 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 513 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 513 |
| EaeI | YGGCCR | 1 cut(s) | 613 |
| Eam1104I | CTCTTC | 1 cut(s) | 568 |
| EarI | CTCTTC | 1 cut(s) | 568 |
| Ecl136II | GAGCTC | 2 cut(s) | 346, 749 |
| Eco24I | GRGCYC | 2 cut(s) | 348, 751 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 515 |
| Eco53kI | GAGCTC | 2 cut(s) | 346, 749 |
| EcoICRI | GAGCTC | 2 cut(s) | 346, 749 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoT38I | GRGCYC | 2 cut(s) | 348, 751 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 3 cut(s) | 344, 380, 620 |
| FatI | CATG | 3 cut(s) | 340, 376, 616 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 4 cut(s) | 29, 254, 371, 551 |
| FriOI | GRGCYC | 2 cut(s) | 348, 751 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GlaI | GCGC | 1 cut(s) | 628 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeIII | GGCC | 1 cut(s) | 615 |
| HgaI | GACGC | 1 cut(s) | 665 |
| HhaI | GCGC | 1 cut(s) | 629 |
| Hin1II | CATG | 3 cut(s) | 344, 380, 620 |
| Hin6I | GCGC | 1 cut(s) | 627 |
| HinP1I | GCGC | 1 cut(s) | 627 |
| HinfI | GANTC | 8 cut(s) | 4, 20, 104, 256, 306, 327, 437, 683 |
| HphI | GGTGA | 1 cut(s) | 757 |
| Hpy166II | GTNNAC | 1 cut(s) | 581 |
| Hpy188I | TCNGA | 3 cut(s) | 80, 184, 688 |
| Hpy188III | TCNNGA | 6 cut(s) | 116, 341, 434, 504, 708, 752 |
| Hpy8I | GTNNAC | 1 cut(s) | 581 |
| HpyAV | CCTTC | 1 cut(s) | 54 |
| HpyCH4IV | ACGT | 2 cut(s) | 96, 583 |
| HpyCH4V | TGCA | 3 cut(s) | 195, 281, 320 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 665, 776 |
| HpyF3I | CTNAG | 5 cut(s) | 294, 415, 491, 639, 687 |
| HpySE526I | ACGT | 2 cut(s) | 96, 583 |
| Hsp92II | CATG | 3 cut(s) | 344, 380, 620 |
| HspAI | GCGC | 1 cut(s) | 627 |
| LmnI | GCTCC | 4 cut(s) | 30, 353, 460, 673 |
| LpnPI | CCDG | 7 cut(s) | 41, 70, 122, 129, 447, 489, 736 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeII | ACGT | 2 cut(s) | 96, 583 |
| MaeIII | GTNAC | 4 cut(s) | 101, 313, 542, 763 |
| MboII | GAAGA | 4 cut(s) | 62, 265, 585, 767 |
| MhlI | GDGCHC | 4 cut(s) | 348, 457, 736, 751 |
| MlsI | TGGCCA | 1 cut(s) | 615 |
| MluCI | AATT | 5 cut(s) | 207, 212, 403, 442, 759 |
| MluNI | TGGCCA | 1 cut(s) | 615 |
| MlyI | GAGTC | 3 cut(s) | 98, 250, 692 |
| MnlI | CCTC | 7 cut(s) | 40, 152, 458, 569, 589, 593, 681 |
| Mox20I | TGGCCA | 1 cut(s) | 615 |
| MscI | TGGCCA | 1 cut(s) | 615 |
| MseI | TTAA | 2 cut(s) | 198, 206 |
| MslI | CAYNNNNRTG | 5 cut(s) | 15, 236, 389, 621, 651 |
| Msp20I | TGGCCA | 1 cut(s) | 615 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 665, 776 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NlaIII | CATG | 3 cut(s) | 344, 380, 620 |
| NlaIV | GGNNCC | 2 cut(s) | 470, 569 |
| NmuCI | GTSAC | 2 cut(s) | 101, 763 |
| OliI | CACNNNNGTG | 1 cut(s) | 236 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PfeI | GAWTC | 4 cut(s) | 20, 306, 327, 437 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 729 |
| PleI | GAGTC | 3 cut(s) | 98, 250, 691 |
| PpsI | GAGTC | 3 cut(s) | 98, 250, 691 |
| Psp124BI | GAGCTC | 2 cut(s) | 348, 751 |
| PspN4I | GGNNCC | 2 cut(s) | 470, 569 |
| PspPI | GGNCC | 1 cut(s) | 515 |
| PstI | CTGCAG | 1 cut(s) | 322 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 5 cut(s) | 15, 236, 389, 621, 651 |
| SacI | GAGCTC | 2 cut(s) | 348, 751 |
| SaqAI | TTAA | 2 cut(s) | 198, 206 |
| Sau96I | GGNCC | 1 cut(s) | 515 |
| SchI | GAGTC | 3 cut(s) | 98, 250, 692 |
| SduI | GDGCHC | 4 cut(s) | 348, 457, 736, 751 |
| SetI | ASST | 9 cut(s) | 99, 123, 338, 348, 358, 580, 586, 670, 751 |
| SfcI | CTRYAG | 1 cut(s) | 318 |
| SinI | GGWCC | 1 cut(s) | 515 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 15, 236, 389, 621, 651 |
| Sse9I | AATT | 5 cut(s) | 207, 212, 403, 442, 759 |
| SsiI | CCGC | 2 cut(s) | 145, 768 |
| SspMI | CTAG | 1 cut(s) | 122 |
| SstI | GAGCTC | 2 cut(s) | 348, 751 |
| TaiI | ACGT | 2 cut(s) | 99, 586 |
| TaqI | TCGA | 3 cut(s) | 304, 309, 407 |
| TasI | AATT | 5 cut(s) | 207, 212, 403, 442, 759 |
| TfiI | GAWTC | 4 cut(s) | 20, 306, 327, 437 |
| Tru1I | TTAA | 2 cut(s) | 198, 206 |
| Tru9I | TTAA | 2 cut(s) | 198, 206 |
| TseFI | GTSAC | 2 cut(s) | 101, 763 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 763 |
| TspDTI | ATGAA | 3 cut(s) | 56, 329, 374 |
| TspGWI | ACGGA | 2 cut(s) | 89, 580 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 729 |
| VpaK11BI | GGWCC | 1 cut(s) | 515 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XspI | CTAG | 1 cut(s) | 122 |