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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 25 |
| AciI | CCGC | 2 cut(s) | 23, 630 |
| AclWI | GGATC | 3 cut(s) | 14, 77, 405 |
| AcoI | YGGCCR | 1 cut(s) | 475 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcyI | GRCGYC | 1 cut(s) | 489 |
| AdeI | CACNNNGTG | 1 cut(s) | 670 |
| AgsI | TTSAA | 3 cut(s) | 160, 526, 536 |
| AleI | CACNNNNGTG | 1 cut(s) | 150 |
| AluBI | AGCT | 3 cut(s) | 346, 611, 662 |
| AluI | AGCT | 3 cut(s) | 346, 611, 662 |
| Alw21I | GWGCWC | 2 cut(s) | 348, 613 |
| Alw26I | GTCTC | 2 cut(s) | 248, 280 |
| AlwI | GGATC | 3 cut(s) | 14, 77, 405 |
| AoxI | GGCC | 1 cut(s) | 475 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AsuHPI | GGTGA | 2 cut(s) | 484, 619 |
| BaeGI | GKGCMC | 1 cut(s) | 598 |
| BalI | TGGCCA | 1 cut(s) | 477 |
| BanII | GRGCYC | 2 cut(s) | 348, 613 |
| BauI | CACGAG | 1 cut(s) | 612 |
| BbsI | GAAGAC | 1 cut(s) | 57 |
| Bbv12I | GWGCWC | 2 cut(s) | 348, 613 |
| BccI | CCATC | 3 cut(s) | 126, 280, 516 |
| BclI | TGATCA | 1 cut(s) | 586 |
| BcoDI | GTCTC | 2 cut(s) | 248, 280 |
| BfaI | CTAG | 2 cut(s) | 122, 698 |
| BpiI | GAAGAC | 1 cut(s) | 57 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 245, 277 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| BsaHI | GRCGYC | 1 cut(s) | 489 |
| Bse1I | ACTGG | 1 cut(s) | 6 |
| Bse3DI | GCAATG | 1 cut(s) | 472 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseGI | GGATG | 1 cut(s) | 22 |
| BseMI | GCAATG | 1 cut(s) | 472 |
| BseNI | ACTGG | 1 cut(s) | 6 |
| BseRI | GAGGAG | 1 cut(s) | 266 |
| BseSI | GKGCMC | 1 cut(s) | 598 |
| BshFI | GGCC | 1 cut(s) | 477 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BsiHKAI | GWGCWC | 2 cut(s) | 348, 613 |
| BsmAI | GTCTC | 2 cut(s) | 248, 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsnI | GGCC | 1 cut(s) | 477 |
| Bsp1286I | GDGCHC | 3 cut(s) | 348, 598, 613 |
| Bsp143I | GATC | 7 cut(s) | 19, 69, 228, 410, 586, 682, 694 |
| BspACI | CCGC | 2 cut(s) | 23, 630 |
| BspANI | GGCC | 1 cut(s) | 477 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspPI | GGATC | 3 cut(s) | 14, 77, 405 |
| BsrBI | CCGCTC | 1 cut(s) | 25 |
| BsrDI | GCAATG | 1 cut(s) | 472 |
| BsrI | ACTGG | 1 cut(s) | 6 |
| BssMI | GATC | 7 cut(s) | 19, 69, 228, 410, 586, 682, 694 |
| BssNI | GRCGYC | 1 cut(s) | 489 |
| BssSI | CACGAG | 1 cut(s) | 612 |
| Bst2BI | CACGAG | 1 cut(s) | 612 |
| Bst4CI | ACNGT | 1 cut(s) | 319 |
| Bst6I | CTCTTC | 1 cut(s) | 430 |
| BstACI | GRCGYC | 1 cut(s) | 489 |
| BstDEI | CTNAG | 2 cut(s) | 294, 501 |
| BstF5I | GGATG | 1 cut(s) | 22 |
| BstKTI | GATC | 7 cut(s) | 22, 72, 231, 413, 589, 685, 697 |
| BstMAI | GTCTC | 2 cut(s) | 248, 280 |
| BstMBI | GATC | 7 cut(s) | 19, 69, 228, 410, 586, 682, 694 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 638, 659 |
| BstSLI | GKGCMC | 1 cut(s) | 598 |
| BstV2I | GAAGAC | 1 cut(s) | 57 |
| BstX2I | RGATCY | 2 cut(s) | 69, 410 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 13, 485 |
| BstYI | RGATCY | 2 cut(s) | 69, 410 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| BsuRI | GGCC | 1 cut(s) | 477 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtsCI | GGATG | 1 cut(s) | 22 |
| CciI | TCATGA | 1 cut(s) | 340 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| CseI | GACGC | 1 cut(s) | 478 |
| CviAII | CATG | 3 cut(s) | 341, 377, 479 |
| CviJI | RGCY | 7 cut(s) | 64, 141, 346, 477, 507, 611, 662 |
| CviKI_1 | RGCY | 7 cut(s) | 64, 141, 346, 477, 507, 611, 662 |
| DdeI | CTNAG | 2 cut(s) | 294, 501 |
| DpnI | GATC | 7 cut(s) | 21, 71, 230, 412, 588, 684, 696 |
| DpnII | GATC | 7 cut(s) | 19, 69, 228, 410, 586, 682, 694 |
| DraIII | CACNNNGTG | 1 cut(s) | 670 |
| EaeI | YGGCCR | 1 cut(s) | 475 |
| Eam1104I | CTCTTC | 1 cut(s) | 430 |
| EarI | CTCTTC | 1 cut(s) | 430 |
| Ecl136II | GAGCTC | 2 cut(s) | 346, 611 |
| Eco24I | GRGCYC | 2 cut(s) | 348, 613 |
| Eco53kI | GAGCTC | 2 cut(s) | 346, 611 |
| EcoICRI | GAGCTC | 2 cut(s) | 346, 611 |
| EcoT38I | GRGCYC | 2 cut(s) | 348, 613 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 3 cut(s) | 344, 380, 482 |
| FatI | CATG | 3 cut(s) | 340, 376, 478 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FbaI | TGATCA | 1 cut(s) | 586 |
| FokI | GGATG | 1 cut(s) | 29 |
| FriOI | GRGCYC | 2 cut(s) | 348, 613 |
| FspBI | CTAG | 2 cut(s) | 122, 698 |
| HaeIII | GGCC | 1 cut(s) | 477 |
| HgaI | GACGC | 1 cut(s) | 478 |
| Hin1I | GRCGYC | 1 cut(s) | 489 |
| Hin1II | CATG | 3 cut(s) | 344, 380, 482 |
| HincII | GTYRAC | 1 cut(s) | 443 |
| HindII | GTYRAC | 1 cut(s) | 443 |
| HinfI | GANTC | 4 cut(s) | 104, 256, 306, 518 |
| HphI | GGTGA | 2 cut(s) | 484, 619 |
| Hpy166II | GTNNAC | 1 cut(s) | 443 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 586 |
| Hpy188III | TCNNGA | 9 cut(s) | 101, 116, 170, 341, 408, 570, 614, 686, 698 |
| Hpy8I | GTNNAC | 1 cut(s) | 443 |
| HpyAV | CCTTC | 2 cut(s) | 54, 277 |
| HpyCH4III | ACNGT | 1 cut(s) | 319 |
| HpyCH4IV | ACGT | 1 cut(s) | 445 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 638, 659 |
| HpyF3I | CTNAG | 2 cut(s) | 294, 501 |
| HpySE526I | ACGT | 1 cut(s) | 445 |
| Hsp92I | GRCGYC | 1 cut(s) | 489 |
| Hsp92II | CATG | 3 cut(s) | 344, 380, 482 |
| Ksp22I | TGATCA | 1 cut(s) | 586 |
| Kzo9I | GATC | 7 cut(s) | 19, 69, 228, 410, 586, 682, 694 |
| LmnI | GCTCC | 1 cut(s) | 30 |
| LpnPI | CCDG | 5 cut(s) | 19, 70, 122, 129, 459 |
| MaeI | CTAG | 2 cut(s) | 122, 698 |
| MaeII | ACGT | 1 cut(s) | 445 |
| MaeIII | GTNAC | 4 cut(s) | 101, 313, 490, 625 |
| MalI | GATC | 7 cut(s) | 21, 71, 230, 412, 588, 684, 696 |
| MbiI | CCGCTC | 1 cut(s) | 25 |
| MboI | GATC | 7 cut(s) | 19, 69, 228, 410, 586, 682, 694 |
| MboII | GAAGA | 7 cut(s) | 59, 62, 406, 447, 629, 692, 701 |
| MflI | RGATCY | 2 cut(s) | 69, 410 |
| MhlI | GDGCHC | 3 cut(s) | 348, 598, 613 |
| MlsI | TGGCCA | 1 cut(s) | 477 |
| MluCI | AATT | 3 cut(s) | 212, 403, 621 |
| MluNI | TGGCCA | 1 cut(s) | 477 |
| MlyI | GAGTC | 3 cut(s) | 98, 250, 512 |
| MnlI | CCTC | 6 cut(s) | 152, 244, 281, 431, 451, 481 |
| Mox20I | TGGCCA | 1 cut(s) | 477 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 477 |
| MseI | TTAA | 2 cut(s) | 198, 206 |
| MslI | CAYNNNNRTG | 4 cut(s) | 15, 150, 483, 513 |
| Msp20I | TGGCCA | 1 cut(s) | 477 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 638, 659 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 7 cut(s) | 19, 69, 228, 410, 586, 682, 694 |
| NlaIII | CATG | 3 cut(s) | 344, 380, 482 |
| NmuCI | GTSAC | 3 cut(s) | 101, 490, 625 |
| OliI | CACNNNNGTG | 1 cut(s) | 150 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 1 cut(s) | 306 |
| PleI | GAGTC | 3 cut(s) | 98, 250, 512 |
| PpsI | GAGTC | 3 cut(s) | 98, 250, 512 |
| Psp124BI | GAGCTC | 2 cut(s) | 348, 613 |
| PsuI | RGATCY | 2 cut(s) | 69, 410 |
| RseI | CAYNNNNRTG | 4 cut(s) | 15, 150, 483, 513 |
| SacI | GAGCTC | 2 cut(s) | 348, 613 |
| SaqAI | TTAA | 2 cut(s) | 198, 206 |
| Sau3AI | GATC | 7 cut(s) | 19, 69, 228, 410, 586, 682, 694 |
| SchI | GAGTC | 3 cut(s) | 98, 250, 512 |
| SduI | GDGCHC | 3 cut(s) | 348, 598, 613 |
| SetI | ASST | 8 cut(s) | 123, 269, 338, 348, 442, 448, 613, 664 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 15, 150, 483, 513 |
| Sse9I | AATT | 3 cut(s) | 212, 403, 621 |
| SsiI | CCGC | 2 cut(s) | 23, 630 |
| SspMI | CTAG | 2 cut(s) | 122, 698 |
| SstI | GAGCTC | 2 cut(s) | 348, 613 |
| TaaI | ACNGT | 1 cut(s) | 319 |
| TaiI | ACGT | 1 cut(s) | 448 |
| TaqI | TCGA | 5 cut(s) | 78, 304, 309, 407, 571 |
| TasI | AATT | 3 cut(s) | 212, 403, 621 |
| TfiI | GAWTC | 1 cut(s) | 306 |
| Tru1I | TTAA | 2 cut(s) | 198, 206 |
| Tru9I | TTAA | 2 cut(s) | 198, 206 |
| TseFI | GTSAC | 3 cut(s) | 101, 490, 625 |
| Tsp45I | GTSAC | 3 cut(s) | 101, 490, 625 |
| TspDTI | ATGAA | 6 cut(s) | 56, 60, 96, 224, 329, 374 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XbaI | TCTAGA | 1 cut(s) | 697 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 122, 698 |