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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 128 |
| AatII | GACGTC | 1 cut(s) | 797 |
| Acc36I | ACCTGC | 2 cut(s) | 64, 152 |
| AccI | GTMKAC | 2 cut(s) | 52, 352 |
| AccII | CGCG | 1 cut(s) | 385 |
| AciI | CCGC | 7 cut(s) | 127, 230, 320, 385, 733, 891, 894 |
| AclWI | GGATC | 7 cut(s) | 70, 330, 344, 351, 381, 388, 528 |
| AcuI | CTGAAG | 1 cut(s) | 299 |
| AcyI | GRCGYC | 2 cut(s) | 389, 794 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 145, 239, 672, 784 |
| AgsI | TTSAA | 1 cut(s) | 94 |
| AjnI | CCWGG | 3 cut(s) | 144, 406, 556 |
| AluBI | AGCT | 4 cut(s) | 103, 151, 288, 304 |
| AluI | AGCT | 4 cut(s) | 103, 151, 288, 304 |
| Alw21I | GWGCWC | 2 cut(s) | 290, 467 |
| Alw26I | GTCTC | 2 cut(s) | 451, 913 |
| AlwI | GGATC | 7 cut(s) | 70, 330, 344, 351, 381, 388, 528 |
| AoxI | GGCC | 2 cut(s) | 263, 775 |
| ApeKI | GCWGC | 5 cut(s) | 203, 577, 586, 636, 849 |
| AspS9I | GGNCC | 1 cut(s) | 130 |
| AsuHPI | GGTGA | 1 cut(s) | 815 |
| AvaII | GGWCC | 1 cut(s) | 130 |
| BanII | GRGCYC | 2 cut(s) | 290, 745 |
| BauI | CACGAG | 1 cut(s) | 744 |
| Bbv12I | GWGCWC | 2 cut(s) | 290, 467 |
| BbvI | GCAGC | 5 cut(s) | 190, 589, 598, 623, 836 |
| BccI | CCATC | 9 cut(s) | 41, 232, 419, 439, 559, 689, 716, 851, 860 |
| BceAI | ACGGC | 2 cut(s) | 101, 887 |
| BciT130I | CCWGG | 3 cut(s) | 146, 408, 558 |
| BclI | TGATCA | 1 cut(s) | 193 |
| BcoDI | GTCTC | 2 cut(s) | 451, 913 |
| BfaI | CTAG | 2 cut(s) | 110, 798 |
| BfmI | CTRYAG | 1 cut(s) | 762 |
| BfuAI | ACCTGC | 2 cut(s) | 64, 152 |
| BisI | GCNGC | 7 cut(s) | 204, 578, 587, 637, 850, 892, 895 |
| BlsI | GCNGC | 7 cut(s) | 205, 579, 588, 638, 851, 893, 896 |
| Bme1390I | CCNGG | 3 cut(s) | 146, 408, 558 |
| Bme18I | GGWCC | 1 cut(s) | 130 |
| BmgT120I | GGNCC | 1 cut(s) | 130 |
| BmiI | GGNNCC | 3 cut(s) | 131, 404, 555 |
| BmrFI | CCNGG | 3 cut(s) | 146, 408, 558 |
| BmrI | ACTGGG | 3 cut(s) | 520, 747, 820 |
| BmsI | GCATC | 1 cut(s) | 760 |
| BmuI | ACTGGG | 3 cut(s) | 520, 747, 820 |
| BpmI | CTGGAG | 1 cut(s) | 579 |
| BsaHI | GRCGYC | 2 cut(s) | 389, 794 |
| BsaJI | CCNNGG | 7 cut(s) | 171, 233, 291, 392, 406, 407, 778 |
| BsaWI | WCCGGW | 1 cut(s) | 43 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 145, 239, 672, 784 |
| Bse1I | ACTGG | 6 cut(s) | 356, 515, 596, 646, 742, 815 |
| Bse3DI | GCAATG | 1 cut(s) | 912 |
| BseBI | CCWGG | 3 cut(s) | 146, 408, 558 |
| BseDI | CCNNGG | 7 cut(s) | 171, 233, 291, 392, 406, 407, 778 |
| BseGI | GGATG | 8 cut(s) | 52, 243, 249, 430, 450, 775, 862, 875 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 145, 239, 672, 784 |
| BseMI | GCAATG | 1 cut(s) | 912 |
| BseMII | CTCAG | 1 cut(s) | 446 |
| BseNI | ACTGG | 6 cut(s) | 356, 515, 596, 646, 742, 815 |
| BseXI | GCAGC | 5 cut(s) | 190, 589, 598, 623, 836 |
| BsgI | GTGCAG | 2 cut(s) | 189, 622 |
| Bsh1236I | CGCG | 1 cut(s) | 385 |
| BshFI | GGCC | 2 cut(s) | 265, 777 |
| BsiHKAI | GWGCWC | 2 cut(s) | 290, 467 |
| BsiSI | CCGG | 1 cut(s) | 44 |
| BslFI | GGGAC | 1 cut(s) | 134 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 145, 239, 672, 784 |
| BsmAI | GTCTC | 2 cut(s) | 451, 913 |
| BsmFI | GGGAC | 1 cut(s) | 134 |
| BsnI | GGCC | 2 cut(s) | 265, 777 |
| Bsp1286I | GDGCHC | 3 cut(s) | 290, 467, 745 |
| BspACI | CCGC | 7 cut(s) | 127, 230, 320, 385, 733, 891, 894 |
| BspANI | GGCC | 2 cut(s) | 265, 777 |
| BspCNI | CTCAG | 1 cut(s) | 447 |
| BspFNI | CGCG | 1 cut(s) | 385 |
| BspLI | GGNNCC | 3 cut(s) | 131, 404, 555 |
| BspMI | ACCTGC | 2 cut(s) | 64, 152 |
| BspPI | GGATC | 7 cut(s) | 70, 330, 344, 351, 381, 388, 528 |
| BsrDI | GCAATG | 1 cut(s) | 912 |
| BsrI | ACTGG | 6 cut(s) | 356, 515, 596, 646, 742, 815 |
| BssECI | CCNNGG | 7 cut(s) | 171, 233, 291, 392, 406, 407, 778 |
| BssNI | GRCGYC | 2 cut(s) | 389, 794 |
| BssSI | CACGAG | 1 cut(s) | 744 |
| BssT1I | CCWWGG | 5 cut(s) | 171, 233, 291, 392, 778 |
| Bst2BI | CACGAG | 1 cut(s) | 744 |
| Bst2UI | CCWGG | 3 cut(s) | 146, 408, 558 |
| Bst4CI | ACNGT | 3 cut(s) | 462, 545, 613 |
| BstACI | GRCGYC | 2 cut(s) | 389, 794 |
| BstC8I | GCNNGC | 1 cut(s) | 775 |
| BstDEI | CTNAG | 1 cut(s) | 455 |
| BstF5I | GGATG | 8 cut(s) | 52, 243, 249, 430, 450, 775, 862, 875 |
| BstFNI | CGCG | 1 cut(s) | 385 |
| BstMAI | GTCTC | 2 cut(s) | 451, 913 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 209, 583, 586, 633, 645, 717 |
| BstNI | CCWGG | 3 cut(s) | 146, 408, 558 |
| BstNSI | RCATGY | 1 cut(s) | 212 |
| BstSCI | CCNGG | 3 cut(s) | 144, 406, 556 |
| BstSFI | CTRYAG | 1 cut(s) | 762 |
| BstUI | CGCG | 1 cut(s) | 385 |
| BstV1I | GCAGC | 5 cut(s) | 190, 589, 598, 623, 836 |
| BstX2I | RGATCY | 1 cut(s) | 373 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 298 |
| BstYI | RGATCY | 1 cut(s) | 373 |
| BsuRI | GGCC | 2 cut(s) | 265, 777 |
| BtgZI | GCGATG | 1 cut(s) | 735 |
| BtsCI | GGATG | 8 cut(s) | 52, 243, 249, 430, 450, 775, 862, 875 |
| BtsIMutI | CAGTG | 2 cut(s) | 589, 639 |
| BveI | ACCTGC | 2 cut(s) | 64, 152 |
| Cac8I | GCNNGC | 1 cut(s) | 775 |
| Cfr13I | GGNCC | 1 cut(s) | 130 |
| CseI | GACGC | 1 cut(s) | 397 |
| CviAII | CATG | 3 cut(s) | 209, 704, 853 |
| DdeI | CTNAG | 1 cut(s) | 455 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 128 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 128 |
| EciI | GGCGGA | 3 cut(s) | 219, 335, 748 |
| Ecl136II | GAGCTC | 1 cut(s) | 288 |
| Eco130I | CCWWGG | 5 cut(s) | 171, 233, 291, 392, 778 |
| Eco147I | AGGCCT | 1 cut(s) | 777 |
| Eco24I | GRGCYC | 2 cut(s) | 290, 745 |
| Eco47I | GGWCC | 1 cut(s) | 130 |
| Eco53kI | GAGCTC | 1 cut(s) | 288 |
| Eco57I | CTGAAG | 1 cut(s) | 299 |
| EcoICRI | GAGCTC | 1 cut(s) | 288 |
| EcoRII | CCWGG | 3 cut(s) | 144, 406, 556 |
| EcoT14I | CCWWGG | 5 cut(s) | 171, 233, 291, 392, 778 |
| EcoT38I | GRGCYC | 2 cut(s) | 290, 745 |
| ErhI | CCWWGG | 5 cut(s) | 171, 233, 291, 392, 778 |
| FaeI | CATG | 3 cut(s) | 212, 707, 856 |
| FaqI | GGGAC | 1 cut(s) | 134 |
| FatI | CATG | 3 cut(s) | 208, 703, 852 |
| FauI | CCCGC | 1 cut(s) | 120 |
| FbaI | TGATCA | 1 cut(s) | 193 |
| FblI | GTMKAC | 2 cut(s) | 52, 352 |
| Fnu4HI | GCNGC | 7 cut(s) | 204, 578, 587, 637, 850, 892, 895 |
| FokI | GGATG | 8 cut(s) | 59, 250, 256, 437, 457, 782, 869, 882 |
| FriOI | GRGCYC | 2 cut(s) | 290, 745 |
| Fsp4HI | GCNGC | 7 cut(s) | 204, 578, 587, 637, 850, 892, 895 |
| FspBI | CTAG | 2 cut(s) | 110, 798 |
| GluI | GCNGC | 7 cut(s) | 204, 578, 587, 637, 850, 892, 895 |
| GsuI | CTGGAG | 1 cut(s) | 579 |
| HaeIII | GGCC | 2 cut(s) | 265, 777 |
| HapII | CCGG | 1 cut(s) | 44 |
| HgaI | GACGC | 1 cut(s) | 397 |
| Hin1I | GRCGYC | 2 cut(s) | 389, 794 |
| Hin1II | CATG | 3 cut(s) | 212, 707, 856 |
| HincII | GTYRAC | 2 cut(s) | 53, 353 |
| HindII | GTYRAC | 2 cut(s) | 53, 353 |
| HinfI | GANTC | 4 cut(s) | 135, 330, 682, 788 |
| HpaII | CCGG | 1 cut(s) | 44 |
| HphI | GGTGA | 1 cut(s) | 815 |
| Hpy166II | GTNNAC | 2 cut(s) | 53, 353 |
| Hpy188I | TCNGA | 5 cut(s) | 134, 279, 456, 541, 842 |
| Hpy188III | TCNNGA | 5 cut(s) | 22, 334, 666, 686, 746 |
| Hpy8I | GTNNAC | 2 cut(s) | 53, 353 |
| Hpy99I | CGWCG | 1 cut(s) | 796 |
| HpyAV | CCTTC | 2 cut(s) | 70, 701 |
| HpyCH4III | ACNGT | 3 cut(s) | 462, 545, 613 |
| HpyCH4IV | ACGT | 1 cut(s) | 794 |
| HpyCH4V | TGCA | 5 cut(s) | 38, 206, 639, 773, 852 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 209, 583, 586, 633, 645, 717 |
| HpyF3I | CTNAG | 1 cut(s) | 455 |
| HpySE526I | ACGT | 1 cut(s) | 794 |
| Hsp92I | GRCGYC | 2 cut(s) | 389, 794 |
| Hsp92II | CATG | 3 cut(s) | 212, 707, 856 |
| Ksp22I | TGATCA | 1 cut(s) | 193 |
| LmnI | GCTCC | 8 cut(s) | 108, 148, 158, 293, 301, 553, 700, 922 |
| Lsp1109I | GCAGC | 5 cut(s) | 190, 589, 598, 623, 836 |
| LweI | GCATC | 1 cut(s) | 760 |
| MaeI | CTAG | 2 cut(s) | 110, 798 |
| MaeII | ACGT | 1 cut(s) | 794 |
| MaeIII | GTNAC | 1 cut(s) | 607 |
| MflI | RGATCY | 1 cut(s) | 373 |
| MhlI | GDGCHC | 3 cut(s) | 290, 467, 745 |
| MlyI | GAGTC | 3 cut(s) | 144, 339, 691 |
| MmeI | TCCRAC | 3 cut(s) | 130, 551, 564 |
| MnlI | CCTC | 4 cut(s) | 23, 567, 811, 869 |
| MseI | TTAA | 1 cut(s) | 315 |
| MspI | CCGG | 1 cut(s) | 44 |
| MspR9I | CCNGG | 3 cut(s) | 146, 408, 558 |
| MvaI | CCWGG | 3 cut(s) | 146, 408, 558 |
| MvnI | CGCG | 1 cut(s) | 385 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 209, 583, 586, 633, 645, 717 |
| NlaIII | CATG | 3 cut(s) | 212, 707, 856 |
| NlaIV | GGNNCC | 3 cut(s) | 131, 404, 555 |
| NspI | RCATGY | 1 cut(s) | 212 |
| PasI | CCCWGGG | 1 cut(s) | 407 |
| PceI | AGGCCT | 1 cut(s) | 777 |
| PfeI | GAWTC | 1 cut(s) | 788 |
| PkrI | GCNGC | 7 cut(s) | 205, 579, 588, 638, 851, 893, 896 |
| PleI | GAGTC | 3 cut(s) | 143, 338, 690 |
| PpsI | GAGTC | 3 cut(s) | 143, 338, 690 |
| Psp124BI | GAGCTC | 1 cut(s) | 290 |
| Psp6I | CCWGG | 3 cut(s) | 144, 406, 556 |
| PspGI | CCWGG | 3 cut(s) | 144, 406, 556 |
| PspN4I | GGNNCC | 3 cut(s) | 131, 404, 555 |
| PspPI | GGNCC | 1 cut(s) | 130 |
| PsuI | RGATCY | 1 cut(s) | 373 |
| SacI | GAGCTC | 1 cut(s) | 290 |
| SalI | GTCGAC | 2 cut(s) | 51, 351 |
| SaqAI | TTAA | 1 cut(s) | 315 |
| SatI | GCNGC | 7 cut(s) | 204, 578, 587, 637, 850, 892, 895 |
| Sau96I | GGNCC | 1 cut(s) | 130 |
| SchI | GAGTC | 3 cut(s) | 144, 339, 691 |
| ScrFI | CCNGG | 3 cut(s) | 146, 408, 558 |
| SduI | GDGCHC | 3 cut(s) | 290, 467, 745 |
| SfaNI | GCATC | 1 cut(s) | 760 |
| SfcI | CTRYAG | 1 cut(s) | 762 |
| SinI | GGWCC | 1 cut(s) | 130 |
| SseBI | AGGCCT | 1 cut(s) | 777 |
| SsiI | CCGC | 7 cut(s) | 127, 230, 320, 385, 733, 891, 894 |
| SspI | AATATT | 1 cut(s) | 935 |
| SspMI | CTAG | 2 cut(s) | 110, 798 |
| SstI | GAGCTC | 1 cut(s) | 290 |
| StuI | AGGCCT | 1 cut(s) | 777 |
| StyD4I | CCNGG | 3 cut(s) | 144, 406, 556 |
| StyI | CCWWGG | 5 cut(s) | 171, 233, 291, 392, 778 |
| TaaI | ACNGT | 3 cut(s) | 462, 545, 613 |
| TaiI | ACGT | 1 cut(s) | 797 |
| TaqI | TCGA | 4 cut(s) | 52, 352, 507, 791 |
| TauI | GCSGC | 2 cut(s) | 894, 897 |
| TfiI | GAWTC | 1 cut(s) | 788 |
| Tru1I | TTAA | 1 cut(s) | 315 |
| Tru9I | TTAA | 1 cut(s) | 315 |
| TscAI | CASTG | 2 cut(s) | 596, 646 |
| TseI | GCWGC | 5 cut(s) | 203, 577, 586, 636, 849 |
| TspDTI | ATGAA | 1 cut(s) | 720 |
| TspRI | CASTG | 2 cut(s) | 596, 646 |
| VpaK11BI | GGWCC | 1 cut(s) | 130 |
| XceI | RCATGY | 1 cut(s) | 212 |
| XmiI | GTMKAC | 2 cut(s) | 52, 352 |
| XspI | CTAG | 2 cut(s) | 110, 798 |
| ZraI | GACGTC | 1 cut(s) | 795 |