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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 261, 494, 575 |
| AccI | GTMKAC | 1 cut(s) | 290 |
| AccIII | TCCGGA | 1 cut(s) | 226 |
| AciI | CCGC | 2 cut(s) | 340, 498 |
| AclWI | GGATC | 2 cut(s) | 128, 302 |
| AcsI | RAATTY | 1 cut(s) | 5 |
| AcyI | GRCGYC | 2 cut(s) | 262, 558 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 524 |
| AgsI | TTSAA | 1 cut(s) | 611 |
| AluBI | AGCT | 4 cut(s) | 139, 149, 371, 452 |
| AluI | AGCT | 4 cut(s) | 139, 149, 371, 452 |
| Alw21I | GWGCWC | 3 cut(s) | 141, 373, 454 |
| Alw26I | GTCTC | 1 cut(s) | 73 |
| AlwI | GGATC | 2 cut(s) | 128, 302 |
| Aor13HI | TCCGGA | 1 cut(s) | 226 |
| ApeKI | GCWGC | 1 cut(s) | 590 |
| ApoI | RAATTY | 1 cut(s) | 5 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 222 |
| AspA2I | CCTAGG | 2 cut(s) | 518, 580 |
| AspLEI | GCGC | 1 cut(s) | 264 |
| AsuHPI | GGTGA | 3 cut(s) | 581, 589, 596 |
| AsuII | TTCGAA | 1 cut(s) | 200 |
| AvrII | CCTAGG | 2 cut(s) | 518, 580 |
| BaeGI | GKGCMC | 1 cut(s) | 439 |
| BanI | GGYRCC | 3 cut(s) | 261, 494, 575 |
| BanII | GRGCYC | 3 cut(s) | 141, 373, 454 |
| BauI | CACGAG | 1 cut(s) | 453 |
| BbsI | GAAGAC | 1 cut(s) | 53 |
| Bbv12I | GWGCWC | 3 cut(s) | 141, 373, 454 |
| BbvI | GCAGC | 1 cut(s) | 577 |
| BccI | CCATC | 6 cut(s) | 73, 512, 519, 548, 566, 570 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 92, 126 |
| BcoDI | GTCTC | 1 cut(s) | 73 |
| BfaI | CTAG | 2 cut(s) | 519, 581 |
| BfoI | RGCGCY | 1 cut(s) | 265 |
| BisI | GCNGC | 1 cut(s) | 591 |
| BlnI | CCTAGG | 2 cut(s) | 518, 580 |
| BlsI | GCNGC | 1 cut(s) | 592 |
| BmiI | GGNNCC | 4 cut(s) | 263, 362, 496, 577 |
| BmsI | GCATC | 3 cut(s) | 19, 535, 577 |
| BpiI | GAAGAC | 1 cut(s) | 53 |
| Bpu14I | TTCGAA | 1 cut(s) | 200 |
| Bsa29I | ATCGAT | 1 cut(s) | 102 |
| BsaHI | GRCGYC | 2 cut(s) | 262, 558 |
| BsaJI | CCNNGG | 3 cut(s) | 207, 518, 580 |
| BsaWI | WCCGGW | 1 cut(s) | 226 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 524 |
| BseAI | TCCGGA | 1 cut(s) | 226 |
| BseCI | ATCGAT | 1 cut(s) | 102 |
| BseDI | CCNNGG | 3 cut(s) | 207, 518, 580 |
| BseGI | GGATG | 2 cut(s) | 504, 559 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 524 |
| BseMII | CTCAG | 1 cut(s) | 417 |
| BseRI | GAGGAG | 1 cut(s) | 363 |
| BseSI | GKGCMC | 1 cut(s) | 439 |
| BseXI | GCAGC | 1 cut(s) | 577 |
| BshNI | GGYRCC | 3 cut(s) | 261, 494, 575 |
| BshVI | ATCGAT | 1 cut(s) | 102 |
| BsiHKAI | GWGCWC | 3 cut(s) | 141, 373, 454 |
| BsiSI | CCGG | 1 cut(s) | 227 |
| BslFI | GGGAC | 1 cut(s) | 518 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 524 |
| BsmAI | GTCTC | 1 cut(s) | 73 |
| BsmBI | CGTCTC | 1 cut(s) | 73 |
| BsmFI | GGGAC | 1 cut(s) | 518 |
| Bsp119I | TTCGAA | 1 cut(s) | 200 |
| Bsp1286I | GDGCHC | 4 cut(s) | 141, 373, 439, 454 |
| Bsp13I | TCCGGA | 1 cut(s) | 226 |
| Bsp143I | GATC | 3 cut(s) | 21, 120, 307 |
| BspACI | CCGC | 2 cut(s) | 340, 498 |
| BspCNI | CTCAG | 1 cut(s) | 418 |
| BspDI | ATCGAT | 1 cut(s) | 102 |
| BspEI | TCCGGA | 1 cut(s) | 226 |
| BspHI | TCATGA | 1 cut(s) | 133 |
| BspLI | GGNNCC | 4 cut(s) | 263, 362, 496, 577 |
| BspPI | GGATC | 2 cut(s) | 128, 302 |
| BspQI | GCTCTTC | 1 cut(s) | 361 |
| BspT104I | TTCGAA | 1 cut(s) | 200 |
| BspT107I | GGYRCC | 3 cut(s) | 261, 494, 575 |
| BssECI | CCNNGG | 3 cut(s) | 207, 518, 580 |
| BssMI | GATC | 3 cut(s) | 21, 120, 307 |
| BssNAI | GTATAC | 1 cut(s) | 291 |
| BssNI | GRCGYC | 2 cut(s) | 262, 558 |
| BssSI | CACGAG | 1 cut(s) | 453 |
| BssT1I | CCWWGG | 2 cut(s) | 518, 580 |
| Bst1107I | GTATAC | 1 cut(s) | 291 |
| Bst2BI | CACGAG | 1 cut(s) | 453 |
| Bst6I | CTCTTC | 1 cut(s) | 361 |
| BstACI | GRCGYC | 2 cut(s) | 262, 558 |
| BstBI | TTCGAA | 1 cut(s) | 200 |
| BstC8I | GCNNGC | 1 cut(s) | 526 |
| BstDEI | CTNAG | 4 cut(s) | 87, 252, 284, 426 |
| BstDSI | CCRYGG | 1 cut(s) | 207 |
| BstEII | GGTNACC | 1 cut(s) | 335 |
| BstF5I | GGATG | 2 cut(s) | 504, 559 |
| BstH2I | RGCGCY | 1 cut(s) | 265 |
| BstHHI | GCGC | 1 cut(s) | 264 |
| BstKTI | GATC | 3 cut(s) | 24, 123, 310 |
| BstMAI | GTCTC | 1 cut(s) | 73 |
| BstMBI | GATC | 3 cut(s) | 21, 120, 307 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 479 |
| BstPI | GGTNACC | 1 cut(s) | 335 |
| BstSLI | GKGCMC | 1 cut(s) | 439 |
| BstV1I | GCAGC | 1 cut(s) | 577 |
| BstV2I | GAAGAC | 1 cut(s) | 53 |
| BstZ17I | GTATAC | 1 cut(s) | 291 |
| Bsu15I | ATCGAT | 1 cut(s) | 102 |
| BsuTUI | ATCGAT | 1 cut(s) | 102 |
| BtgI | CCRYGG | 1 cut(s) | 207 |
| BtgZI | GCGATG | 1 cut(s) | 47 |
| BtsCI | GGATG | 2 cut(s) | 504, 559 |
| BtsI | GCAGTG | 1 cut(s) | 468 |
| BtsIMutI | CAGTG | 1 cut(s) | 468 |
| Cac8I | GCNNGC | 1 cut(s) | 526 |
| CciI | TCATGA | 1 cut(s) | 133 |
| CfoI | GCGC | 1 cut(s) | 264 |
| ClaI | ATCGAT | 1 cut(s) | 102 |
| CseI | GACGC | 1 cut(s) | 547 |
| CviAII | CATG | 4 cut(s) | 134, 170, 542, 566 |
| CviJI | RGCY | 5 cut(s) | 139, 149, 371, 452, 524 |
| CviKI_1 | RGCY | 5 cut(s) | 139, 149, 371, 452, 524 |
| DdeI | CTNAG | 4 cut(s) | 87, 252, 284, 426 |
| DinI | GGCGCC | 1 cut(s) | 263 |
| DpnI | GATC | 3 cut(s) | 23, 122, 309 |
| DpnII | GATC | 3 cut(s) | 21, 120, 307 |
| Eam1104I | CTCTTC | 1 cut(s) | 361 |
| EarI | CTCTTC | 1 cut(s) | 361 |
| Ecl136II | GAGCTC | 3 cut(s) | 139, 371, 452 |
| Eco130I | CCWWGG | 2 cut(s) | 518, 580 |
| Eco24I | GRGCYC | 3 cut(s) | 141, 373, 454 |
| Eco53kI | GAGCTC | 3 cut(s) | 139, 371, 452 |
| Eco91I | GGTNACC | 1 cut(s) | 335 |
| EcoICRI | GAGCTC | 3 cut(s) | 139, 371, 452 |
| EcoO65I | GGTNACC | 1 cut(s) | 335 |
| EcoRI | GAATTC | 1 cut(s) | 5 |
| EcoT14I | CCWWGG | 2 cut(s) | 518, 580 |
| EcoT38I | GRGCYC | 3 cut(s) | 141, 373, 454 |
| EgeI | GGCGCC | 1 cut(s) | 263 |
| EheI | GGCGCC | 1 cut(s) | 263 |
| ErhI | CCWWGG | 2 cut(s) | 518, 580 |
| Esp3I | CGTCTC | 1 cut(s) | 73 |
| FaeI | CATG | 4 cut(s) | 137, 173, 545, 569 |
| FaqI | GGGAC | 1 cut(s) | 518 |
| FatI | CATG | 4 cut(s) | 133, 169, 541, 565 |
| FblI | GTMKAC | 1 cut(s) | 290 |
| Fnu4HI | GCNGC | 1 cut(s) | 591 |
| FokI | GGATG | 2 cut(s) | 491, 566 |
| FriOI | GRGCYC | 3 cut(s) | 141, 373, 454 |
| Fsp4HI | GCNGC | 1 cut(s) | 591 |
| FspBI | CTAG | 2 cut(s) | 519, 581 |
| GlaI | GCGC | 1 cut(s) | 263 |
| GluI | GCNGC | 1 cut(s) | 591 |
| HaeII | RGCGCY | 1 cut(s) | 265 |
| HapII | CCGG | 1 cut(s) | 227 |
| HgaI | GACGC | 1 cut(s) | 547 |
| HhaI | GCGC | 1 cut(s) | 264 |
| Hin1I | GRCGYC | 2 cut(s) | 262, 558 |
| Hin1II | CATG | 4 cut(s) | 137, 173, 545, 569 |
| Hin6I | GCGC | 1 cut(s) | 262 |
| HinP1I | GCGC | 1 cut(s) | 262 |
| HinfI | GANTC | 3 cut(s) | 49, 99, 230 |
| HpaII | CCGG | 1 cut(s) | 227 |
| HphI | GGTGA | 3 cut(s) | 581, 589, 596 |
| Hpy166II | GTNNAC | 1 cut(s) | 291 |
| Hpy188I | TCNGA | 2 cut(s) | 307, 427 |
| Hpy188III | TCNNGA | 4 cut(s) | 134, 227, 411, 455 |
| Hpy8I | GTNNAC | 1 cut(s) | 291 |
| HpyAV | CCTTC | 3 cut(s) | 70, 326, 485 |
| HpyCH4V | TGCA | 3 cut(s) | 74, 113, 593 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 479 |
| HpyF3I | CTNAG | 4 cut(s) | 87, 252, 284, 426 |
| Hsp92I | GRCGYC | 2 cut(s) | 262, 558 |
| Hsp92II | CATG | 4 cut(s) | 137, 173, 545, 569 |
| HspAI | GCGC | 1 cut(s) | 262 |
| KasI | GGCGCC | 1 cut(s) | 261 |
| Kpn2I | TCCGGA | 1 cut(s) | 226 |
| Kzo9I | GATC | 3 cut(s) | 21, 120, 307 |
| LguI | GCTCTTC | 1 cut(s) | 361 |
| LmnI | GCTCC | 1 cut(s) | 376 |
| LpnPI | CCDG | 2 cut(s) | 240, 510 |
| Lsp1109I | GCAGC | 1 cut(s) | 577 |
| LweI | GCATC | 3 cut(s) | 19, 535, 577 |
| MaeI | CTAG | 2 cut(s) | 519, 581 |
| MaeIII | GTNAC | 1 cut(s) | 335 |
| MalI | GATC | 3 cut(s) | 23, 122, 309 |
| MboI | GATC | 3 cut(s) | 21, 120, 307 |
| MboII | GAAGA | 4 cut(s) | 58, 199, 378, 470 |
| MhlI | GDGCHC | 4 cut(s) | 141, 373, 439, 454 |
| MluCI | AATT | 3 cut(s) | 5, 196, 235 |
| Mly113I | GGCGCC | 1 cut(s) | 262 |
| MlyI | GAGTC | 1 cut(s) | 43 |
| MnlI | CCTC | 4 cut(s) | 251, 259, 384, 511 |
| MroI | TCCGGA | 1 cut(s) | 226 |
| MroXI | GAANNNNTTC | 1 cut(s) | 222 |
| MseI | TTAA | 1 cut(s) | 622 |
| MslI | CAYNNNNRTG | 2 cut(s) | 567, 570 |
| MspI | CCGG | 1 cut(s) | 227 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 479 |
| NarI | GGCGCC | 1 cut(s) | 262 |
| NdeII | GATC | 3 cut(s) | 21, 120, 307 |
| NlaIII | CATG | 4 cut(s) | 137, 173, 545, 569 |
| NlaIV | GGNNCC | 4 cut(s) | 263, 362, 496, 577 |
| NspV | TTCGAA | 1 cut(s) | 200 |
| PagI | TCATGA | 1 cut(s) | 133 |
| PciSI | GCTCTTC | 1 cut(s) | 361 |
| PdmI | GAANNNNTTC | 1 cut(s) | 222 |
| PfeI | GAWTC | 2 cut(s) | 99, 230 |
| PkrI | GCNGC | 1 cut(s) | 592 |
| PleI | GAGTC | 1 cut(s) | 43 |
| PluTI | GGCGCC | 1 cut(s) | 265 |
| PpsI | GAGTC | 1 cut(s) | 43 |
| Psp124BI | GAGCTC | 3 cut(s) | 141, 373, 454 |
| PspEI | GGTNACC | 1 cut(s) | 335 |
| PspN4I | GGNNCC | 4 cut(s) | 263, 362, 496, 577 |
| RseI | CAYNNNNRTG | 2 cut(s) | 567, 570 |
| SacI | GAGCTC | 3 cut(s) | 141, 373, 454 |
| SapI | GCTCTTC | 1 cut(s) | 361 |
| SaqAI | TTAA | 1 cut(s) | 622 |
| SatI | GCNGC | 1 cut(s) | 591 |
| Sau3AI | GATC | 3 cut(s) | 21, 120, 307 |
| SchI | GAGTC | 1 cut(s) | 43 |
| SduI | GDGCHC | 4 cut(s) | 141, 373, 439, 454 |
| SfaNI | GCATC | 3 cut(s) | 19, 535, 577 |
| SfoI | GGCGCC | 1 cut(s) | 263 |
| SfuI | TTCGAA | 1 cut(s) | 200 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 567, 570 |
| Sse9I | AATT | 3 cut(s) | 5, 196, 235 |
| SsiI | CCGC | 2 cut(s) | 340, 498 |
| SspDI | GGCGCC | 1 cut(s) | 261 |
| SspMI | CTAG | 2 cut(s) | 519, 581 |
| SstI | GAGCTC | 3 cut(s) | 141, 373, 454 |
| StyI | CCWWGG | 2 cut(s) | 518, 580 |
| TaqI | TCGA | 5 cut(s) | 97, 102, 200, 390, 412 |
| TasI | AATT | 3 cut(s) | 5, 196, 235 |
| TfiI | GAWTC | 2 cut(s) | 99, 230 |
| Tru1I | TTAA | 1 cut(s) | 622 |
| Tru9I | TTAA | 1 cut(s) | 622 |
| TscAI | CASTG | 1 cut(s) | 475 |
| TseI | GCWGC | 1 cut(s) | 590 |
| TspDTI | ATGAA | 2 cut(s) | 122, 167 |
| TspGWI | ACGGA | 3 cut(s) | 133, 196, 373 |
| TspRI | CASTG | 1 cut(s) | 475 |
| XapI | RAATTY | 1 cut(s) | 5 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 569 |
| XmaJI | CCTAGG | 2 cut(s) | 518, 580 |
| XmiI | GTMKAC | 1 cut(s) | 290 |
| XmnI | GAANNNNTTC | 1 cut(s) | 222 |
| XspI | CTAG | 2 cut(s) | 519, 581 |