gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 612 |
| AccI | GTMKAC | 1 cut(s) | 67 |
| AccII | CGCG | 1 cut(s) | 567 |
| AccIII | TCCGGA | 1 cut(s) | 325 |
| AciI | CCGC | 2 cut(s) | 215, 287 |
| AclWI | GGATC | 4 cut(s) | 425, 437, 438, 604 |
| AcoI | YGGCCR | 3 cut(s) | 236, 278, 305 |
| AfaI | GTAC | 3 cut(s) | 440, 466, 470 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 234, 276, 303, 392, 578, 612 |
| AflII | CTTAAG | 1 cut(s) | 417 |
| AgsI | TTSAA | 1 cut(s) | 495 |
| Alw26I | GTCTC | 1 cut(s) | 360 |
| AlwI | GGATC | 4 cut(s) | 425, 437, 438, 604 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 109, 378, 612 |
| Aor13HI | TCCGGA | 1 cut(s) | 325 |
| AoxI | GGCC | 6 cut(s) | 225, 236, 267, 278, 291, 305 |
| ApeKI | GCWGC | 7 cut(s) | 93, 96, 139, 248, 483, 486, 507 |
| AspLEI | GCGC | 3 cut(s) | 378, 409, 569 |
| AspS9I | GGNCC | 1 cut(s) | 395 |
| AsuC2I | CCSGG | 2 cut(s) | 224, 266 |
| AvaII | GGWCC | 1 cut(s) | 395 |
| BaeGI | GKGCMC | 1 cut(s) | 53 |
| BamHI | GGATCC | 1 cut(s) | 430 |
| BanII | GRGCYC | 2 cut(s) | 13, 85 |
| BbsI | GAAGAC | 1 cut(s) | 592 |
| BbvI | GCAGC | 7 cut(s) | 83, 105, 126, 260, 470, 473, 494 |
| BccI | CCATC | 2 cut(s) | 420, 543 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 26, 60, 143, 177 |
| BciVI | GTATCC | 1 cut(s) | 375 |
| BcnI | CCSGG | 2 cut(s) | 224, 266 |
| BcoDI | GTCTC | 1 cut(s) | 360 |
| BfaI | CTAG | 3 cut(s) | 229, 271, 363 |
| BfmI | CTRYAG | 2 cut(s) | 162, 246 |
| BfoI | RGCGCY | 1 cut(s) | 379 |
| BfrI | CTTAAG | 1 cut(s) | 417 |
| BfuI | GTATCC | 1 cut(s) | 375 |
| BisI | GCNGC | 7 cut(s) | 94, 97, 140, 249, 484, 487, 508 |
| BlsI | GCNGC | 7 cut(s) | 95, 98, 141, 250, 485, 488, 509 |
| Bme1390I | CCNGG | 2 cut(s) | 224, 266 |
| Bme18I | GGWCC | 1 cut(s) | 395 |
| BmgT120I | GGNCC | 1 cut(s) | 395 |
| BmiI | GGNNCC | 2 cut(s) | 396, 432 |
| BmrFI | CCNGG | 2 cut(s) | 224, 266 |
| BmsI | GCATC | 1 cut(s) | 422 |
| BpiI | GAAGAC | 1 cut(s) | 592 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 341, 373 |
| BpuMI | CCSGG | 2 cut(s) | 224, 266 |
| BsaAI | YACGTR | 1 cut(s) | 468 |
| BsaWI | WCCGGW | 1 cut(s) | 325 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 234, 276, 303, 392, 578, 612 |
| Bse1I | ACTGG | 1 cut(s) | 617 |
| BseAI | TCCGGA | 1 cut(s) | 325 |
| BseGI | GGATG | 1 cut(s) | 334 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 234, 276, 303, 392, 578, 612 |
| BseMII | CTCAG | 1 cut(s) | 426 |
| BseNI | ACTGG | 1 cut(s) | 617 |
| BseRI | GAGGAG | 1 cut(s) | 463 |
| BseSI | GKGCMC | 1 cut(s) | 53 |
| BseXI | GCAGC | 7 cut(s) | 83, 105, 126, 260, 470, 473, 494 |
| BsgI | GTGCAG | 2 cut(s) | 189, 242 |
| Bsh1236I | CGCG | 1 cut(s) | 567 |
| BshFI | GGCC | 6 cut(s) | 227, 238, 269, 280, 293, 307 |
| BsiSI | CCGG | 6 cut(s) | 224, 235, 266, 277, 304, 326 |
| BsiWI | CGTACG | 1 cut(s) | 464 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 234, 276, 303, 392, 578, 612 |
| BsmAI | GTCTC | 1 cut(s) | 360 |
| BsnI | GGCC | 6 cut(s) | 227, 238, 269, 280, 293, 307 |
| Bsp1286I | GDGCHC | 3 cut(s) | 13, 53, 85 |
| Bsp13I | TCCGGA | 1 cut(s) | 325 |
| Bsp143I | GATC | 3 cut(s) | 430, 442, 596 |
| BspACI | CCGC | 2 cut(s) | 215, 287 |
| BspANI | GGCC | 6 cut(s) | 227, 238, 269, 280, 293, 307 |
| BspCNI | CTCAG | 1 cut(s) | 427 |
| BspEI | TCCGGA | 1 cut(s) | 325 |
| BspFNI | CGCG | 1 cut(s) | 567 |
| BspHI | TCATGA | 1 cut(s) | 544 |
| BspLI | GGNNCC | 2 cut(s) | 396, 432 |
| BspMAI | CTGCAG | 2 cut(s) | 166, 250 |
| BspPI | GGATC | 4 cut(s) | 425, 437, 438, 604 |
| BspTI | CTTAAG | 1 cut(s) | 417 |
| BsrI | ACTGG | 1 cut(s) | 617 |
| BssMI | GATC | 3 cut(s) | 430, 442, 596 |
| BstAFI | CTTAAG | 1 cut(s) | 417 |
| BstBAI | YACGTR | 1 cut(s) | 468 |
| BstC8I | GCNNGC | 6 cut(s) | 9, 49, 91, 114, 291, 411 |
| BstDEI | CTNAG | 1 cut(s) | 435 |
| BstF5I | GGATG | 1 cut(s) | 334 |
| BstFNI | CGCG | 1 cut(s) | 567 |
| BstH2I | RGCGCY | 1 cut(s) | 379 |
| BstHHI | GCGC | 3 cut(s) | 378, 409, 569 |
| BstKTI | GATC | 3 cut(s) | 433, 445, 599 |
| BstMAI | GTCTC | 1 cut(s) | 360 |
| BstMBI | GATC | 3 cut(s) | 430, 442, 596 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 13, 53, 182, 286, 516, 525 |
| BstSCI | CCNGG | 2 cut(s) | 222, 264 |
| BstSFI | CTRYAG | 2 cut(s) | 162, 246 |
| BstSLI | GKGCMC | 1 cut(s) | 53 |
| BstSNI | TACGTA | 1 cut(s) | 468 |
| BstUI | CGCG | 1 cut(s) | 567 |
| BstV1I | GCAGC | 7 cut(s) | 83, 105, 126, 260, 470, 473, 494 |
| BstV2I | GAAGAC | 1 cut(s) | 592 |
| BstX2I | RGATCY | 1 cut(s) | 430 |
| BstYI | RGATCY | 1 cut(s) | 430 |
| BsuI | GTATCC | 1 cut(s) | 375 |
| BsuRI | GGCC | 6 cut(s) | 227, 238, 269, 280, 293, 307 |
| BtsCI | GGATG | 1 cut(s) | 334 |
| Cac8I | GCNNGC | 6 cut(s) | 9, 49, 91, 114, 291, 411 |
| CaiI | CAGNNNCTG | 3 cut(s) | 109, 378, 612 |
| CciI | TCATGA | 1 cut(s) | 544 |
| CfoI | GCGC | 3 cut(s) | 378, 409, 569 |
| Cfr13I | GGNCC | 1 cut(s) | 395 |
| CseI | GACGC | 2 cut(s) | 30, 573 |
| Csp6I | GTAC | 3 cut(s) | 439, 465, 469 |
| CviAII | CATG | 2 cut(s) | 545, 557 |
| CviQI | GTAC | 3 cut(s) | 439, 465, 469 |
| DdeI | CTNAG | 1 cut(s) | 435 |
| DpnI | GATC | 3 cut(s) | 432, 444, 598 |
| DpnII | GATC | 3 cut(s) | 430, 442, 596 |
| EaeI | YGGCCR | 3 cut(s) | 236, 278, 305 |
| Eco105I | TACGTA | 1 cut(s) | 468 |
| Eco24I | GRGCYC | 2 cut(s) | 13, 85 |
| Eco47I | GGWCC | 1 cut(s) | 395 |
| EcoT38I | GRGCYC | 2 cut(s) | 13, 85 |
| FaeI | CATG | 2 cut(s) | 548, 560 |
| FaiI | YATR | 2 cut(s) | 546, 558 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 336, 368 |
| FatI | CATG | 2 cut(s) | 544, 556 |
| FblI | GTMKAC | 1 cut(s) | 67 |
| Fnu4HI | GCNGC | 7 cut(s) | 94, 97, 140, 249, 484, 487, 508 |
| FokI | GGATG | 1 cut(s) | 341 |
| FriOI | GRGCYC | 2 cut(s) | 13, 85 |
| Fsp4HI | GCNGC | 7 cut(s) | 94, 97, 140, 249, 484, 487, 508 |
| FspBI | CTAG | 3 cut(s) | 229, 271, 363 |
| GlaI | GCGC | 3 cut(s) | 377, 408, 568 |
| GluI | GCNGC | 7 cut(s) | 94, 97, 140, 249, 484, 487, 508 |
| HaeII | RGCGCY | 1 cut(s) | 379 |
| HaeIII | GGCC | 6 cut(s) | 227, 238, 269, 280, 293, 307 |
| HapII | CCGG | 6 cut(s) | 224, 235, 266, 277, 304, 326 |
| HgaI | GACGC | 2 cut(s) | 30, 573 |
| HhaI | GCGC | 3 cut(s) | 378, 409, 569 |
| Hin1II | CATG | 2 cut(s) | 548, 560 |
| Hin6I | GCGC | 3 cut(s) | 376, 407, 567 |
| HinP1I | GCGC | 3 cut(s) | 376, 407, 567 |
| HincII | GTYRAC | 1 cut(s) | 68 |
| HindII | GTYRAC | 1 cut(s) | 68 |
| HpaII | CCGG | 6 cut(s) | 224, 235, 266, 277, 304, 326 |
| Hpy166II | GTNNAC | 1 cut(s) | 68 |
| Hpy188III | TCNNGA | 6 cut(s) | 134, 326, 434, 459, 545, 600 |
| Hpy8I | GTNNAC | 1 cut(s) | 68 |
| HpyCH4IV | ACGT | 2 cut(s) | 463, 467 |
| HpyCH4V | TGCA | 7 cut(s) | 29, 89, 112, 164, 206, 248, 259 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 13, 53, 182, 286, 516, 525 |
| HpyF3I | CTNAG | 1 cut(s) | 435 |
| HpySE526I | ACGT | 2 cut(s) | 463, 467 |
| Hsp92II | CATG | 2 cut(s) | 548, 560 |
| HspAI | GCGC | 3 cut(s) | 376, 407, 567 |
| Kpn2I | TCCGGA | 1 cut(s) | 325 |
| Kzo9I | GATC | 3 cut(s) | 430, 442, 596 |
| LmnI | GCTCC | 5 cut(s) | 237, 256, 279, 362, 574 |
| Lsp1109I | GCAGC | 7 cut(s) | 83, 105, 126, 260, 470, 473, 494 |
| LweI | GCATC | 1 cut(s) | 422 |
| MaeI | CTAG | 3 cut(s) | 229, 271, 363 |
| MaeII | ACGT | 2 cut(s) | 463, 467 |
| MaeIII | GTNAC | 1 cut(s) | 333 |
| MalI | GATC | 3 cut(s) | 432, 444, 598 |
| MboI | GATC | 3 cut(s) | 430, 442, 596 |
| MboII | GAAGA | 1 cut(s) | 597 |
| MflI | RGATCY | 1 cut(s) | 430 |
| MhlI | GDGCHC | 3 cut(s) | 13, 53, 85 |
| MluCI | AATT | 1 cut(s) | 298 |
| MnlI | CCTC | 5 cut(s) | 222, 333, 484, 509, 572 |
| MroI | TCCGGA | 1 cut(s) | 325 |
| MseI | TTAA | 2 cut(s) | 418, 626 |
| MslI | CAYNNNNRTG | 2 cut(s) | 543, 559 |
| MspA1I | CMGCKG | 1 cut(s) | 96 |
| MspCI | CTTAAG | 1 cut(s) | 417 |
| MspI | CCGG | 6 cut(s) | 224, 235, 266, 277, 304, 326 |
| MspR9I | CCNGG | 2 cut(s) | 224, 266 |
| MvnI | CGCG | 1 cut(s) | 567 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 13, 53, 182, 286, 516, 525 |
| NciI | CCSGG | 2 cut(s) | 224, 266 |
| NdeII | GATC | 3 cut(s) | 430, 442, 596 |
| NlaIII | CATG | 2 cut(s) | 548, 560 |
| NlaIV | GGNNCC | 2 cut(s) | 396, 432 |
| NmeAIII | GCCGAG | 3 cut(s) | 42, 82, 102 |
| PagI | TCATGA | 1 cut(s) | 544 |
| Pfl23II | CGTACG | 1 cut(s) | 464 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 612 |
| PkrI | GCNGC | 7 cut(s) | 95, 98, 141, 250, 485, 488, 509 |
| Ppu21I | YACGTR | 1 cut(s) | 468 |
| PspLI | CGTACG | 1 cut(s) | 464 |
| PspN4I | GGNNCC | 2 cut(s) | 396, 432 |
| PspPI | GGNCC | 1 cut(s) | 395 |
| PstI | CTGCAG | 2 cut(s) | 166, 250 |
| PstNI | CAGNNNCTG | 3 cut(s) | 109, 378, 612 |
| PsuI | RGATCY | 1 cut(s) | 430 |
| PvuII | CAGCTG | 1 cut(s) | 96 |
| RsaI | GTAC | 3 cut(s) | 440, 466, 470 |
| RsaNI | GTAC | 3 cut(s) | 439, 465, 469 |
| RseI | CAYNNNNRTG | 2 cut(s) | 543, 559 |
| SalI | GTCGAC | 1 cut(s) | 66 |
| SaqAI | TTAA | 2 cut(s) | 418, 626 |
| SatI | GCNGC | 7 cut(s) | 94, 97, 140, 249, 484, 487, 508 |
| Sau3AI | GATC | 3 cut(s) | 430, 442, 596 |
| Sau96I | GGNCC | 1 cut(s) | 395 |
| ScrFI | CCNGG | 2 cut(s) | 224, 266 |
| SduI | GDGCHC | 3 cut(s) | 13, 53, 85 |
| SfaNI | GCATC | 1 cut(s) | 422 |
| SfcI | CTRYAG | 2 cut(s) | 162, 246 |
| SinI | GGWCC | 1 cut(s) | 395 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 543, 559 |
| SmlI | CTYRAG | 1 cut(s) | 417 |
| SmoI | CTYRAG | 1 cut(s) | 417 |
| SnaBI | TACGTA | 1 cut(s) | 468 |
| Sse9I | AATT | 1 cut(s) | 298 |
| SsiI | CCGC | 2 cut(s) | 215, 287 |
| SspMI | CTAG | 3 cut(s) | 229, 271, 363 |
| StyD4I | CCNGG | 2 cut(s) | 222, 264 |
| TaiI | ACGT | 2 cut(s) | 466, 470 |
| TaqI | TCGA | 3 cut(s) | 36, 67, 133 |
| TasI | AATT | 1 cut(s) | 298 |
| Tru1I | TTAA | 2 cut(s) | 418, 626 |
| Tru9I | TTAA | 2 cut(s) | 418, 626 |
| TseI | GCWGC | 7 cut(s) | 93, 96, 139, 248, 483, 486, 507 |
| TspDTI | ATGAA | 2 cut(s) | 538, 573 |
| TspGWI | ACGGA | 1 cut(s) | 387 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 612 |
| Vha464I | CTTAAG | 1 cut(s) | 417 |
| VpaK11BI | GGWCC | 1 cut(s) | 395 |
| XmiI | GTMKAC | 1 cut(s) | 67 |
| XspI | CTAG | 3 cut(s) | 229, 271, 363 |