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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 450, 495 |
| Acc65I | GGTACC | 1 cut(s) | 525 |
| AccB1I | GGYRCC | 2 cut(s) | 121, 525 |
| AccBSI | CCGCTC | 1 cut(s) | 523 |
| AciI | CCGC | 4 cut(s) | 523, 571, 592, 605 |
| AclWI | GGATC | 1 cut(s) | 141 |
| AcuI | CTGAAG | 1 cut(s) | 852 |
| AcvI | CACGTG | 2 cut(s) | 614, 632 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AdeI | CACNNNGTG | 1 cut(s) | 617 |
| AfaI | GTAC | 2 cut(s) | 527, 770 |
| AfeI | AGCGCT | 2 cut(s) | 258, 269 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 64, 509, 510, 536, 580, 633 |
| AflIII | ACRYGT | 2 cut(s) | 611, 629 |
| AgsI | TTSAA | 6 cut(s) | 96, 307, 314, 343, 456, 826 |
| AjnI | CCWGG | 2 cut(s) | 117, 579 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 3 cut(s) | 247, 725, 830 |
| AluI | AGCT | 3 cut(s) | 247, 725, 830 |
| AlwI | GGATC | 1 cut(s) | 141 |
| Aor51HI | AGCGCT | 2 cut(s) | 258, 269 |
| AoxI | GGCC | 2 cut(s) | 458, 559 |
| ApaI | GGGCCC | 1 cut(s) | 563 |
| ApeKI | GCWGC | 2 cut(s) | 353, 725 |
| Asp718I | GGTACC | 1 cut(s) | 525 |
| AspLEI | GCGC | 4 cut(s) | 259, 270, 330, 516 |
| AspS9I | GGNCC | 4 cut(s) | 459, 559, 560, 748 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 1 cut(s) | 802 |
| AvaII | GGWCC | 1 cut(s) | 748 |
| BaeGI | GKGCMC | 1 cut(s) | 563 |
| BanI | GGYRCC | 2 cut(s) | 121, 525 |
| BanII | GRGCYC | 1 cut(s) | 563 |
| BauI | CACGAG | 1 cut(s) | 437 |
| BbrPI | CACGTG | 2 cut(s) | 614, 632 |
| BbvI | GCAGC | 2 cut(s) | 340, 712 |
| BccI | CCATC | 2 cut(s) | 93, 785 |
| BceAI | ACGGC | 1 cut(s) | 645 |
| BciT130I | CCWGG | 2 cut(s) | 119, 581 |
| BciVI | GTATCC | 2 cut(s) | 601, 662 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BfaI | CTAG | 4 cut(s) | 15, 260, 657, 722 |
| BfoI | RGCGCY | 2 cut(s) | 260, 271 |
| BfuI | GTATCC | 2 cut(s) | 601, 662 |
| BisI | GCNGC | 2 cut(s) | 354, 726 |
| BlsI | GCNGC | 2 cut(s) | 355, 727 |
| Bme1390I | CCNGG | 3 cut(s) | 119, 131, 581 |
| Bme18I | GGWCC | 1 cut(s) | 748 |
| BmgT120I | GGNCC | 4 cut(s) | 459, 559, 560, 748 |
| BmiI | GGNNCC | 4 cut(s) | 123, 527, 561, 749 |
| BmrFI | CCNGG | 3 cut(s) | 119, 131, 581 |
| BmsI | GCATC | 3 cut(s) | 174, 226, 841 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| BsaAI | YACGTR | 2 cut(s) | 614, 632 |
| BsaBI | GATNNNNATC | 1 cut(s) | 804 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 209, 239, 628, 658 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 64, 509, 510, 536, 580, 633 |
| Bse118I | RCCGGY | 1 cut(s) | 692 |
| Bse3DI | GCAATG | 2 cut(s) | 283, 712 |
| Bse8I | GATNNNNATC | 1 cut(s) | 804 |
| BseBI | CCWGG | 2 cut(s) | 119, 581 |
| BseGI | GGATG | 2 cut(s) | 241, 856 |
| BseJI | GATNNNNATC | 1 cut(s) | 804 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 64, 509, 510, 536, 580, 633 |
| BseMI | GCAATG | 2 cut(s) | 283, 712 |
| BseMII | CTCAG | 3 cut(s) | 223, 408, 743 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 1 cut(s) | 563 |
| BseXI | GCAGC | 2 cut(s) | 340, 712 |
| BshFI | GGCC | 2 cut(s) | 460, 561 |
| BshNI | GGYRCC | 2 cut(s) | 121, 525 |
| BsiSI | CCGG | 2 cut(s) | 131, 693 |
| BslFI | GGGAC | 3 cut(s) | 555, 564, 761 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 64, 509, 510, 536, 580, 633 |
| BsmFI | GGGAC | 3 cut(s) | 555, 564, 761 |
| BsnI | GGCC | 2 cut(s) | 460, 561 |
| Bsp120I | GGGCCC | 1 cut(s) | 559 |
| Bsp1286I | GDGCHC | 1 cut(s) | 563 |
| Bsp143I | GATC | 2 cut(s) | 133, 228 |
| BspACI | CCGC | 4 cut(s) | 523, 571, 592, 605 |
| BspANI | GGCC | 2 cut(s) | 460, 561 |
| BspCNI | CTCAG | 3 cut(s) | 222, 409, 744 |
| BspHI | TCATGA | 1 cut(s) | 481 |
| BspLI | GGNNCC | 4 cut(s) | 123, 527, 561, 749 |
| BspPI | GGATC | 1 cut(s) | 141 |
| BspQI | GCTCTTC | 1 cut(s) | 258 |
| BspT107I | GGYRCC | 2 cut(s) | 121, 525 |
| BsrBI | CCGCTC | 1 cut(s) | 523 |
| BsrDI | GCAATG | 2 cut(s) | 283, 712 |
| BsrFI | RCCGGY | 1 cut(s) | 692 |
| BssAI | RCCGGY | 1 cut(s) | 692 |
| BssMI | GATC | 2 cut(s) | 133, 228 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| BssSI | CACGAG | 1 cut(s) | 437 |
| Bst2BI | CACGAG | 1 cut(s) | 437 |
| Bst2UI | CCWGG | 2 cut(s) | 119, 581 |
| Bst4CI | ACNGT | 1 cut(s) | 62 |
| Bst6I | CTCTTC | 1 cut(s) | 258 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 702 |
| BstBAI | YACGTR | 2 cut(s) | 614, 632 |
| BstC8I | GCNNGC | 4 cut(s) | 165, 337, 712, 716 |
| BstDEI | CTNAG | 5 cut(s) | 209, 417, 471, 531, 752 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 2 cut(s) | 241, 856 |
| BstH2I | RGCGCY | 2 cut(s) | 260, 271 |
| BstHHI | GCGC | 4 cut(s) | 259, 270, 330, 516 |
| BstKTI | GATC | 2 cut(s) | 136, 231 |
| BstMBI | GATC | 2 cut(s) | 133, 228 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 265, 336, 520, 702, 711 |
| BstNI | CCWGG | 2 cut(s) | 119, 581 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 3 cut(s) | 117, 129, 579 |
| BstSLI | GKGCMC | 1 cut(s) | 563 |
| BstV1I | GCAGC | 2 cut(s) | 340, 712 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| BsuI | GTATCC | 2 cut(s) | 601, 662 |
| BsuRI | GGCC | 2 cut(s) | 460, 561 |
| BtsCI | GGATG | 2 cut(s) | 241, 856 |
| Cac8I | GCNNGC | 4 cut(s) | 165, 337, 712, 716 |
| CciI | TCATGA | 1 cut(s) | 481 |
| CfoI | GCGC | 4 cut(s) | 259, 270, 330, 516 |
| Cfr10I | RCCGGY | 1 cut(s) | 692 |
| Cfr13I | GGNCC | 4 cut(s) | 459, 559, 560, 748 |
| CseI | GACGC | 1 cut(s) | 198 |
| Csp6I | GTAC | 2 cut(s) | 526, 769 |
| CviAII | CATG | 5 cut(s) | 31, 164, 388, 425, 482 |
| CviJI | RGCY | 8 cut(s) | 247, 339, 460, 561, 660, 672, 725, 830 |
| CviKI_1 | RGCY | 8 cut(s) | 247, 339, 460, 561, 660, 672, 725, 830 |
| CviQI | GTAC | 2 cut(s) | 526, 769 |
| DdeI | CTNAG | 5 cut(s) | 209, 417, 471, 531, 752 |
| DpnI | GATC | 2 cut(s) | 135, 230 |
| DpnII | GATC | 2 cut(s) | 133, 228 |
| DraIII | CACNNNGTG | 1 cut(s) | 617 |
| Eam1104I | CTCTTC | 1 cut(s) | 258 |
| EarI | CTCTTC | 1 cut(s) | 258 |
| Eco24I | GRGCYC | 1 cut(s) | 563 |
| Eco47I | GGWCC | 1 cut(s) | 748 |
| Eco47III | AGCGCT | 2 cut(s) | 258, 269 |
| Eco57I | CTGAAG | 1 cut(s) | 852 |
| Eco72I | CACGTG | 2 cut(s) | 614, 632 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO109I | RGGNCCY | 1 cut(s) | 748 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 2 cut(s) | 117, 579 |
| EcoT38I | GRGCYC | 1 cut(s) | 563 |
| FaeI | CATG | 5 cut(s) | 34, 167, 391, 428, 485 |
| FaqI | GGGAC | 3 cut(s) | 555, 564, 761 |
| FatI | CATG | 5 cut(s) | 30, 163, 387, 424, 481 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 2 cut(s) | 354, 726 |
| FokI | GGATG | 2 cut(s) | 248, 863 |
| FriOI | GRGCYC | 1 cut(s) | 563 |
| Fsp4HI | GCNGC | 2 cut(s) | 354, 726 |
| FspBI | CTAG | 4 cut(s) | 15, 260, 657, 722 |
| GlaI | GCGC | 4 cut(s) | 258, 269, 329, 515 |
| GluI | GCNGC | 2 cut(s) | 354, 726 |
| HaeII | RGCGCY | 2 cut(s) | 260, 271 |
| HaeIII | GGCC | 2 cut(s) | 460, 561 |
| HapII | CCGG | 2 cut(s) | 131, 693 |
| HgaI | GACGC | 1 cut(s) | 198 |
| HhaI | GCGC | 4 cut(s) | 259, 270, 330, 516 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 5 cut(s) | 34, 167, 391, 428, 485 |
| Hin6I | GCGC | 4 cut(s) | 257, 268, 328, 514 |
| HinP1I | GCGC | 4 cut(s) | 257, 268, 328, 514 |
| HinfI | GANTC | 4 cut(s) | 18, 38, 287, 396 |
| HpaII | CCGG | 2 cut(s) | 131, 693 |
| HphI | GGTGA | 1 cut(s) | 802 |
| Hpy166II | GTNNAC | 1 cut(s) | 404 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 212, 367, 418 |
| Hpy188III | TCNNGA | 3 cut(s) | 181, 439, 482 |
| Hpy8I | GTNNAC | 1 cut(s) | 404 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 3 cut(s) | 301, 503, 578 |
| HpyCH4III | ACNGT | 1 cut(s) | 62 |
| HpyCH4IV | ACGT | 3 cut(s) | 553, 613, 631 |
| HpyCH4V | TGCA | 9 cut(s) | 148, 239, 356, 500, 705, 710, 728, 844, 854 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 265, 336, 520, 702, 711 |
| HpyF3I | CTNAG | 5 cut(s) | 209, 417, 471, 531, 752 |
| HpySE526I | ACGT | 3 cut(s) | 553, 613, 631 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 5 cut(s) | 34, 167, 391, 428, 485 |
| HspAI | GCGC | 4 cut(s) | 257, 268, 328, 514 |
| KpnI | GGTACC | 1 cut(s) | 529 |
| Kzo9I | GATC | 2 cut(s) | 133, 228 |
| LguI | GCTCTTC | 1 cut(s) | 258 |
| LmnI | GCTCC | 1 cut(s) | 520 |
| Lsp1109I | GCAGC | 2 cut(s) | 340, 712 |
| LweI | GCATC | 3 cut(s) | 174, 226, 841 |
| MaeI | CTAG | 4 cut(s) | 15, 260, 657, 722 |
| MaeII | ACGT | 3 cut(s) | 553, 613, 631 |
| MaeIII | GTNAC | 2 cut(s) | 67, 662 |
| MalI | GATC | 2 cut(s) | 135, 230 |
| MbiI | CCGCTC | 1 cut(s) | 523 |
| MboI | GATC | 2 cut(s) | 133, 228 |
| MboII | GAAGA | 6 cut(s) | 275, 791, 794, 797, 800, 845 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 1 cut(s) | 563 |
| MluCI | AATT | 4 cut(s) | 361, 445, 451, 490 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MnlI | CCTC | 9 cut(s) | 302, 305, 361, 424, 435, 478, 541, 632, 811 |
| MslI | CAYNNNNRTG | 2 cut(s) | 437, 849 |
| MspI | CCGG | 2 cut(s) | 131, 693 |
| MspR9I | CCNGG | 3 cut(s) | 119, 131, 581 |
| MvaI | CCWGG | 2 cut(s) | 119, 581 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 265, 336, 520, 702, 711 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 2 cut(s) | 133, 228 |
| NlaIII | CATG | 5 cut(s) | 34, 167, 391, 428, 485 |
| NlaIV | GGNNCC | 4 cut(s) | 123, 527, 561, 749 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PagI | TCATGA | 1 cut(s) | 481 |
| PciSI | GCTCTTC | 1 cut(s) | 258 |
| PfeI | GAWTC | 2 cut(s) | 287, 396 |
| PkrI | GCNGC | 2 cut(s) | 355, 727 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PmaCI | CACGTG | 2 cut(s) | 614, 632 |
| PmlI | CACGTG | 2 cut(s) | 614, 632 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| Ppu21I | YACGTR | 2 cut(s) | 614, 632 |
| PpuMI | RGGWCCY | 1 cut(s) | 748 |
| PsiI | TTATAA | 2 cut(s) | 450, 495 |
| Psp5II | RGGWCCY | 1 cut(s) | 748 |
| Psp6I | CCWGG | 2 cut(s) | 117, 579 |
| PspCI | CACGTG | 2 cut(s) | 614, 632 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 2 cut(s) | 117, 579 |
| PspN4I | GGNNCC | 4 cut(s) | 123, 527, 561, 749 |
| PspOMI | GGGCCC | 1 cut(s) | 559 |
| PspPI | GGNCC | 4 cut(s) | 459, 559, 560, 748 |
| PspPPI | RGGWCCY | 1 cut(s) | 748 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 2 cut(s) | 527, 770 |
| RsaNI | GTAC | 2 cut(s) | 526, 769 |
| RseI | CAYNNNNRTG | 2 cut(s) | 437, 849 |
| SapI | GCTCTTC | 1 cut(s) | 258 |
| SatI | GCNGC | 2 cut(s) | 354, 726 |
| Sau3AI | GATC | 2 cut(s) | 133, 228 |
| Sau96I | GGNCC | 4 cut(s) | 459, 559, 560, 748 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 3 cut(s) | 119, 131, 581 |
| SduI | GDGCHC | 1 cut(s) | 563 |
| SfaNI | GCATC | 3 cut(s) | 174, 226, 841 |
| SinI | GGWCC | 1 cut(s) | 748 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 437, 849 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 4 cut(s) | 361, 445, 451, 490 |
| SsiI | CCGC | 4 cut(s) | 523, 571, 592, 605 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 4 cut(s) | 15, 260, 657, 722 |
| StyD4I | CCNGG | 3 cut(s) | 117, 129, 579 |
| TaaI | ACNGT | 1 cut(s) | 62 |
| TaiI | ACGT | 3 cut(s) | 556, 616, 634 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 227 |
| TasI | AATT | 4 cut(s) | 361, 445, 451, 490 |
| TfiI | GAWTC | 2 cut(s) | 287, 396 |
| TseI | GCWGC | 2 cut(s) | 353, 725 |
| TspDTI | ATGAA | 3 cut(s) | 24, 470, 852 |
| VpaK11BI | GGWCC | 1 cut(s) | 748 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XspI | CTAG | 4 cut(s) | 15, 260, 657, 722 |