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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 566, 641 |
| AciI | CCGC | 2 cut(s) | 208, 483 |
| AclWI | GGATC | 1 cut(s) | 468 |
| AcoI | YGGCCR | 1 cut(s) | 553 |
| AcsI | RAATTY | 2 cut(s) | 149, 790 |
| AcyI | GRCGYC | 1 cut(s) | 567 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 671 |
| AgsI | TTSAA | 5 cut(s) | 149, 223, 314, 604, 758 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 3 cut(s) | 129, 664, 727 |
| AluBI | AGCT | 1 cut(s) | 409 |
| AluI | AGCT | 1 cut(s) | 409 |
| Alw21I | GWGCWC | 1 cut(s) | 411 |
| Alw26I | GTCTC | 2 cut(s) | 209, 343 |
| AlwI | GGATC | 1 cut(s) | 468 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 341 |
| AoxI | GGCC | 3 cut(s) | 93, 553, 779 |
| ApeKI | GCWGC | 1 cut(s) | 737 |
| ApoI | RAATTY | 2 cut(s) | 149, 790 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 252 |
| AspLEI | GCGC | 1 cut(s) | 569 |
| AsuHPI | GGTGA | 3 cut(s) | 728, 736, 743 |
| BalI | TGGCCA | 1 cut(s) | 555 |
| BanI | GGYRCC | 2 cut(s) | 566, 641 |
| BanII | GRGCYC | 2 cut(s) | 411, 727 |
| Bbv12I | GWGCWC | 1 cut(s) | 411 |
| BbvI | GCAGC | 1 cut(s) | 724 |
| BccI | CCATC | 6 cut(s) | 92, 189, 343, 594, 632, 713 |
| BciT130I | CCWGG | 3 cut(s) | 131, 666, 729 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 2 cut(s) | 209, 343 |
| BfaI | CTAG | 2 cut(s) | 126, 185 |
| BfoI | RGCGCY | 1 cut(s) | 570 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BisI | GCNGC | 1 cut(s) | 738 |
| BlsI | GCNGC | 1 cut(s) | 739 |
| Bme1390I | CCNGG | 3 cut(s) | 131, 666, 729 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 4 cut(s) | 509, 568, 643, 724 |
| BmrFI | CCNGG | 3 cut(s) | 131, 666, 729 |
| BmrI | ACTGGG | 1 cut(s) | 329 |
| BmsI | GCATC | 2 cut(s) | 94, 724 |
| BmuI | ACTGGG | 1 cut(s) | 329 |
| Bpu10I | CCTNAGC | 1 cut(s) | 776 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 140 |
| Bsa29I | ATCGAT | 1 cut(s) | 372 |
| BsaHI | GRCGYC | 1 cut(s) | 567 |
| BsaJI | CCNNGG | 3 cut(s) | 665, 696, 727 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 671 |
| Bse1I | ACTGG | 3 cut(s) | 49, 335, 676 |
| BseBI | CCWGG | 3 cut(s) | 131, 666, 729 |
| BseCI | ATCGAT | 1 cut(s) | 372 |
| BseDI | CCNNGG | 3 cut(s) | 665, 696, 727 |
| BseGI | GGATG | 1 cut(s) | 447 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 671 |
| BseMII | CTCAG | 1 cut(s) | 790 |
| BseNI | ACTGG | 3 cut(s) | 49, 335, 676 |
| BseXI | GCAGC | 1 cut(s) | 724 |
| BshFI | GGCC | 3 cut(s) | 95, 555, 781 |
| BshNI | GGYRCC | 2 cut(s) | 566, 641 |
| BshVI | ATCGAT | 1 cut(s) | 372 |
| BsiHKAI | GWGCWC | 1 cut(s) | 411 |
| BslFI | GGGAC | 3 cut(s) | 665, 682, 824 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 671 |
| BsmAI | GTCTC | 2 cut(s) | 209, 343 |
| BsmFI | GGGAC | 3 cut(s) | 665, 682, 824 |
| BsnI | GGCC | 3 cut(s) | 95, 555, 781 |
| Bsp1286I | GDGCHC | 2 cut(s) | 411, 727 |
| Bsp143I | GATC | 2 cut(s) | 291, 473 |
| Bsp19I | CCATGG | 1 cut(s) | 696 |
| BspACI | CCGC | 2 cut(s) | 208, 483 |
| BspANI | GGCC | 3 cut(s) | 95, 555, 781 |
| BspCNI | CTCAG | 1 cut(s) | 789 |
| BspDI | ATCGAT | 1 cut(s) | 372 |
| BspHI | TCATGA | 1 cut(s) | 403 |
| BspLI | GGNNCC | 4 cut(s) | 509, 568, 643, 724 |
| BspPI | GGATC | 1 cut(s) | 468 |
| BspT107I | GGYRCC | 2 cut(s) | 566, 641 |
| BsrI | ACTGG | 3 cut(s) | 49, 335, 676 |
| BssECI | CCNNGG | 3 cut(s) | 665, 696, 727 |
| BssMI | GATC | 2 cut(s) | 291, 473 |
| BssNI | GRCGYC | 1 cut(s) | 567 |
| BssT1I | CCWWGG | 1 cut(s) | 696 |
| Bst2UI | CCWGG | 3 cut(s) | 131, 666, 729 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 679 |
| BstACI | GRCGYC | 1 cut(s) | 567 |
| BstDEI | CTNAG | 4 cut(s) | 357, 579, 776, 843 |
| BstDSI | CCRYGG | 1 cut(s) | 696 |
| BstF5I | GGATG | 1 cut(s) | 447 |
| BstH2I | RGCGCY | 1 cut(s) | 570 |
| BstHHI | GCGC | 1 cut(s) | 569 |
| BstKTI | GATC | 2 cut(s) | 294, 476 |
| BstMAI | GTCTC | 2 cut(s) | 209, 343 |
| BstMBI | GATC | 2 cut(s) | 291, 473 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 811 |
| BstNI | CCWGG | 3 cut(s) | 131, 666, 729 |
| BstSCI | CCNGG | 3 cut(s) | 129, 664, 727 |
| BstV1I | GCAGC | 1 cut(s) | 724 |
| BstX2I | RGATCY | 1 cut(s) | 473 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 563, 665 |
| BstYI | RGATCY | 1 cut(s) | 473 |
| Bsu15I | ATCGAT | 1 cut(s) | 372 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 3 cut(s) | 95, 555, 781 |
| BsuTUI | ATCGAT | 1 cut(s) | 372 |
| BtgI | CCRYGG | 1 cut(s) | 696 |
| BtgZI | GCGATG | 1 cut(s) | 317 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 1 cut(s) | 447 |
| CaiI | CAGNNNCTG | 1 cut(s) | 341 |
| CciI | TCATGA | 1 cut(s) | 403 |
| CfoI | GCGC | 1 cut(s) | 569 |
| ClaI | ATCGAT | 1 cut(s) | 372 |
| CseI | GACGC | 2 cut(s) | 694, 781 |
| CviAII | CATG | 4 cut(s) | 164, 404, 440, 697 |
| DdeI | CTNAG | 4 cut(s) | 357, 579, 776, 843 |
| DinI | GGCGCC | 1 cut(s) | 568 |
| DpnI | GATC | 2 cut(s) | 293, 475 |
| DpnII | GATC | 2 cut(s) | 291, 473 |
| EaeI | YGGCCR | 1 cut(s) | 553 |
| Ecl136II | GAGCTC | 1 cut(s) | 409 |
| Eco130I | CCWWGG | 1 cut(s) | 696 |
| Eco147I | AGGCCT | 1 cut(s) | 781 |
| Eco24I | GRGCYC | 2 cut(s) | 411, 727 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 1 cut(s) | 409 |
| EcoICRI | GAGCTC | 1 cut(s) | 409 |
| EcoRII | CCWGG | 3 cut(s) | 129, 664, 727 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 1 cut(s) | 696 |
| EcoT38I | GRGCYC | 2 cut(s) | 411, 727 |
| EgeI | GGCGCC | 1 cut(s) | 568 |
| EheI | GGCGCC | 1 cut(s) | 568 |
| ErhI | CCWWGG | 1 cut(s) | 696 |
| FaeI | CATG | 4 cut(s) | 167, 407, 443, 700 |
| FaqI | GGGAC | 3 cut(s) | 665, 682, 824 |
| FatI | CATG | 4 cut(s) | 163, 403, 439, 696 |
| Fnu4HI | GCNGC | 1 cut(s) | 738 |
| FokI | GGATG | 1 cut(s) | 434 |
| FriOI | GRGCYC | 2 cut(s) | 411, 727 |
| Fsp4HI | GCNGC | 1 cut(s) | 738 |
| FspBI | CTAG | 2 cut(s) | 126, 185 |
| GlaI | GCGC | 1 cut(s) | 568 |
| GluI | GCNGC | 1 cut(s) | 738 |
| HaeII | RGCGCY | 1 cut(s) | 570 |
| HaeIII | GGCC | 3 cut(s) | 95, 555, 781 |
| HgaI | GACGC | 2 cut(s) | 694, 781 |
| HhaI | GCGC | 1 cut(s) | 569 |
| Hin1I | GRCGYC | 1 cut(s) | 567 |
| Hin1II | CATG | 4 cut(s) | 167, 407, 443, 700 |
| Hin6I | GCGC | 1 cut(s) | 567 |
| HinP1I | GCGC | 1 cut(s) | 567 |
| HincII | GTYRAC | 1 cut(s) | 521 |
| HindII | GTYRAC | 1 cut(s) | 521 |
| HinfI | GANTC | 6 cut(s) | 102, 115, 167, 310, 369, 390 |
| HphI | GGTGA | 3 cut(s) | 728, 736, 743 |
| Hpy166II | GTNNAC | 2 cut(s) | 521, 655 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 247, 771 |
| Hpy188III | TCNNGA | 6 cut(s) | 71, 119, 179, 233, 404, 471 |
| Hpy8I | GTNNAC | 2 cut(s) | 521, 655 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 679 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 159, 523 |
| HpyCH4V | TGCA | 2 cut(s) | 344, 740 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 811 |
| HpyF3I | CTNAG | 4 cut(s) | 357, 579, 776, 843 |
| HpySE526I | ACGT | 3 cut(s) | 135, 159, 523 |
| Hsp92I | GRCGYC | 1 cut(s) | 567 |
| Hsp92II | CATG | 4 cut(s) | 167, 407, 443, 700 |
| HspAI | GCGC | 1 cut(s) | 567 |
| KasI | GGCGCC | 1 cut(s) | 566 |
| Kzo9I | GATC | 2 cut(s) | 291, 473 |
| LmnI | GCTCC | 2 cut(s) | 34, 722 |
| Lsp1109I | GCAGC | 1 cut(s) | 724 |
| LweI | GCATC | 2 cut(s) | 94, 724 |
| MaeI | CTAG | 2 cut(s) | 126, 185 |
| MaeII | ACGT | 3 cut(s) | 135, 159, 523 |
| MaeIII | GTNAC | 3 cut(s) | 5, 376, 478 |
| MalI | GATC | 2 cut(s) | 293, 475 |
| MboI | GATC | 2 cut(s) | 291, 473 |
| MboII | GAAGA | 1 cut(s) | 469 |
| MflI | RGATCY | 1 cut(s) | 473 |
| MhlI | GDGCHC | 2 cut(s) | 411, 727 |
| MlsI | TGGCCA | 1 cut(s) | 555 |
| MluCI | AATT | 5 cut(s) | 17, 149, 275, 466, 790 |
| MluNI | TGGCCA | 1 cut(s) | 555 |
| Mly113I | GGCGCC | 1 cut(s) | 567 |
| MlyI | GAGTC | 1 cut(s) | 161 |
| MnlI | CCTC | 7 cut(s) | 509, 529, 533, 559, 621, 658, 825 |
| Mox20I | TGGCCA | 1 cut(s) | 555 |
| MroXI | GAANNNNTTC | 1 cut(s) | 252 |
| MscI | TGGCCA | 1 cut(s) | 555 |
| MseI | TTAA | 2 cut(s) | 261, 269 |
| MslI | CAYNNNNRTG | 4 cut(s) | 452, 561, 591, 714 |
| Msp20I | TGGCCA | 1 cut(s) | 555 |
| MspR9I | CCNGG | 3 cut(s) | 131, 666, 729 |
| MvaI | CCWGG | 3 cut(s) | 131, 666, 729 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 811 |
| NarI | GGCGCC | 1 cut(s) | 567 |
| NcoI | CCATGG | 1 cut(s) | 696 |
| NdeII | GATC | 2 cut(s) | 291, 473 |
| NlaIII | CATG | 4 cut(s) | 167, 407, 443, 700 |
| NlaIV | GGNNCC | 4 cut(s) | 509, 568, 643, 724 |
| PagI | TCATGA | 1 cut(s) | 403 |
| PceI | AGGCCT | 1 cut(s) | 781 |
| PdmI | GAANNNNTTC | 1 cut(s) | 252 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 310, 369, 390 |
| PkrI | GCNGC | 1 cut(s) | 739 |
| PleI | GAGTC | 1 cut(s) | 161 |
| PluTI | GGCGCC | 1 cut(s) | 570 |
| PpsI | GAGTC | 1 cut(s) | 161 |
| Psp124BI | GAGCTC | 1 cut(s) | 411 |
| Psp6I | CCWGG | 3 cut(s) | 129, 664, 727 |
| PspGI | CCWGG | 3 cut(s) | 129, 664, 727 |
| PspN4I | GGNNCC | 4 cut(s) | 509, 568, 643, 724 |
| PstNI | CAGNNNCTG | 1 cut(s) | 341 |
| PsuI | RGATCY | 1 cut(s) | 473 |
| RseI | CAYNNNNRTG | 4 cut(s) | 452, 561, 591, 714 |
| SacI | GAGCTC | 1 cut(s) | 411 |
| SaqAI | TTAA | 2 cut(s) | 261, 269 |
| SatI | GCNGC | 1 cut(s) | 738 |
| Sau3AI | GATC | 2 cut(s) | 291, 473 |
| SchI | GAGTC | 1 cut(s) | 161 |
| ScrFI | CCNGG | 3 cut(s) | 131, 666, 729 |
| SduI | GDGCHC | 2 cut(s) | 411, 727 |
| SfaNI | GCATC | 2 cut(s) | 94, 724 |
| SfoI | GGCGCC | 1 cut(s) | 568 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 452, 561, 591, 714 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| Sse9I | AATT | 5 cut(s) | 17, 149, 275, 466, 790 |
| SseBI | AGGCCT | 1 cut(s) | 781 |
| SsiI | CCGC | 2 cut(s) | 208, 483 |
| SspDI | GGCGCC | 1 cut(s) | 566 |
| SspMI | CTAG | 2 cut(s) | 126, 185 |
| SstI | GAGCTC | 1 cut(s) | 411 |
| StuI | AGGCCT | 1 cut(s) | 781 |
| StyD4I | CCNGG | 3 cut(s) | 129, 664, 727 |
| StyI | CCWWGG | 1 cut(s) | 696 |
| TaaI | ACNGT | 2 cut(s) | 145, 679 |
| TaiI | ACGT | 3 cut(s) | 138, 162, 526 |
| TaqI | TCGA | 3 cut(s) | 367, 372, 470 |
| TasI | AATT | 5 cut(s) | 17, 149, 275, 466, 790 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 310, 369, 390 |
| Tru1I | TTAA | 2 cut(s) | 261, 269 |
| Tru9I | TTAA | 2 cut(s) | 261, 269 |
| TseI | GCWGC | 1 cut(s) | 737 |
| TspDTI | ATGAA | 2 cut(s) | 392, 437 |
| TspGWI | ACGGA | 3 cut(s) | 466, 520, 640 |
| XapI | RAATTY | 2 cut(s) | 149, 790 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 662, 668, 716 |
| XmnI | GAANNNNTTC | 1 cut(s) | 252 |
| XspI | CTAG | 2 cut(s) | 126, 185 |