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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 159, 340, 433 |
| AcoI | YGGCCR | 2 cut(s) | 312, 447 |
| AcsI | RAATTY | 1 cut(s) | 330 |
| AfaI | GTAC | 1 cut(s) | 602 |
| AgeI | ACCGGT | 1 cut(s) | 229 |
| AgsI | TTSAA | 1 cut(s) | 351 |
| AjiI | CACGTC | 3 cut(s) | 141, 220, 490 |
| AjnI | CCWGG | 1 cut(s) | 483 |
| AluBI | AGCT | 1 cut(s) | 509 |
| AluI | AGCT | 1 cut(s) | 509 |
| Alw26I | GTCTC | 1 cut(s) | 646 |
| Ama87I | CYCGRG | 1 cut(s) | 473 |
| AoxI | GGCC | 4 cut(s) | 134, 312, 341, 447 |
| ApaI | GGGCCC | 1 cut(s) | 138 |
| ApeKI | GCWGC | 1 cut(s) | 533 |
| ApoI | RAATTY | 1 cut(s) | 330 |
| AsiGI | ACCGGT | 1 cut(s) | 229 |
| AspLEI | GCGC | 1 cut(s) | 216 |
| AspS9I | GGNCC | 4 cut(s) | 134, 135, 152, 190 |
| AsuC2I | CCSGG | 2 cut(s) | 262, 290 |
| AvaI | CYCGRG | 1 cut(s) | 473 |
| AvaII | GGWCC | 2 cut(s) | 152, 190 |
| BaeGI | GKGCMC | 1 cut(s) | 138 |
| BanII | GRGCYC | 1 cut(s) | 138 |
| BbvI | GCAGC | 1 cut(s) | 545 |
| BccI | CCATC | 3 cut(s) | 244, 446, 569 |
| BceAI | ACGGC | 1 cut(s) | 462 |
| BciT130I | CCWGG | 1 cut(s) | 485 |
| BcnI | CCSGG | 2 cut(s) | 262, 290 |
| BcoDI | GTCTC | 1 cut(s) | 646 |
| BfaI | CTAG | 1 cut(s) | 480 |
| BfoI | RGCGCY | 1 cut(s) | 217 |
| BisI | GCNGC | 2 cut(s) | 341, 534 |
| BlsI | GCNGC | 2 cut(s) | 342, 535 |
| Bme1390I | CCNGG | 3 cut(s) | 262, 290, 485 |
| Bme18I | GGWCC | 2 cut(s) | 152, 190 |
| BmeT110I | CYCGRG | 1 cut(s) | 473 |
| BmgBI | CACGTC | 3 cut(s) | 141, 220, 490 |
| BmgT120I | GGNCC | 4 cut(s) | 134, 135, 152, 190 |
| BmiI | GGNNCC | 3 cut(s) | 136, 154, 192 |
| BmrFI | CCNGG | 3 cut(s) | 262, 290, 485 |
| BmrI | ACTGGG | 1 cut(s) | 235 |
| BmsI | GCATC | 2 cut(s) | 217, 448 |
| BmuI | ACTGGG | 1 cut(s) | 235 |
| BpmI | CTGGAG | 1 cut(s) | 581 |
| BpuEI | CTTGAG | 1 cut(s) | 495 |
| BpuMI | CCSGG | 2 cut(s) | 262, 290 |
| BsaAI | YACGTR | 1 cut(s) | 179 |
| BsaI | GGTCTC | 1 cut(s) | 646 |
| BsaJI | CCNNGG | 2 cut(s) | 124, 277 |
| BsaWI | WCCGGW | 1 cut(s) | 229 |
| Bse118I | RCCGGY | 1 cut(s) | 229 |
| Bse1I | ACTGG | 4 cut(s) | 59, 241, 403, 598 |
| BseBI | CCWGG | 1 cut(s) | 485 |
| BseDI | CCNNGG | 2 cut(s) | 124, 277 |
| BseGI | GGATG | 4 cut(s) | 222, 360, 564, 592 |
| BseNI | ACTGG | 4 cut(s) | 59, 241, 403, 598 |
| BseSI | GKGCMC | 1 cut(s) | 138 |
| BseX3I | CGGCCG | 1 cut(s) | 447 |
| BseXI | GCAGC | 1 cut(s) | 545 |
| Bsh1285I | CGRYCG | 1 cut(s) | 450 |
| BshFI | GGCC | 4 cut(s) | 136, 314, 343, 449 |
| BshTI | ACCGGT | 1 cut(s) | 229 |
| BsiEI | CGRYCG | 1 cut(s) | 450 |
| BsiHKCI | CYCGRG | 1 cut(s) | 473 |
| BsiSI | CCGG | 6 cut(s) | 230, 262, 289, 300, 311, 337 |
| BsmAI | GTCTC | 1 cut(s) | 646 |
| BsnI | GGCC | 4 cut(s) | 136, 314, 343, 449 |
| Bso31I | GGTCTC | 1 cut(s) | 646 |
| BsoBI | CYCGRG | 1 cut(s) | 473 |
| Bsp120I | GGGCCC | 1 cut(s) | 134 |
| Bsp1286I | GDGCHC | 1 cut(s) | 138 |
| Bsp19I | CCATGG | 1 cut(s) | 124 |
| BspACI | CCGC | 3 cut(s) | 159, 340, 433 |
| BspANI | GGCC | 4 cut(s) | 136, 314, 343, 449 |
| BspLI | GGNNCC | 3 cut(s) | 136, 154, 192 |
| BspTNI | GGTCTC | 1 cut(s) | 646 |
| BsrFI | RCCGGY | 1 cut(s) | 229 |
| BsrI | ACTGG | 4 cut(s) | 59, 241, 403, 598 |
| BssAI | RCCGGY | 1 cut(s) | 229 |
| BssECI | CCNNGG | 2 cut(s) | 124, 277 |
| BssT1I | CCWWGG | 1 cut(s) | 124 |
| Bst2UI | CCWGG | 1 cut(s) | 485 |
| Bst4CI | ACNGT | 1 cut(s) | 499 |
| BstBAI | YACGTR | 1 cut(s) | 179 |
| BstC8I | GCNNGC | 2 cut(s) | 437, 507 |
| BstDEI | CTNAG | 1 cut(s) | 538 |
| BstDSI | CCRYGG | 1 cut(s) | 124 |
| BstF5I | GGATG | 4 cut(s) | 222, 360, 564, 592 |
| BstH2I | RGCGCY | 1 cut(s) | 217 |
| BstHHI | GCGC | 1 cut(s) | 216 |
| BstMAI | GTCTC | 1 cut(s) | 646 |
| BstMCI | CGRYCG | 1 cut(s) | 450 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 20, 107, 167, 181, 205, 530, 542, 551 |
| BstNI | CCWGG | 1 cut(s) | 485 |
| BstSCI | CCNGG | 3 cut(s) | 260, 288, 483 |
| BstSLI | GKGCMC | 1 cut(s) | 138 |
| BstV1I | GCAGC | 1 cut(s) | 545 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 125 |
| BstZI | CGGCCG | 1 cut(s) | 447 |
| BsuRI | GGCC | 4 cut(s) | 136, 314, 343, 449 |
| BtgI | CCRYGG | 1 cut(s) | 124 |
| BtrI | CACGTC | 3 cut(s) | 141, 220, 490 |
| BtsCI | GGATG | 4 cut(s) | 222, 360, 564, 592 |
| BtsI | GCAGTG | 2 cut(s) | 170, 194 |
| BtsIMutI | CAGTG | 2 cut(s) | 170, 194 |
| Cac8I | GCNNGC | 2 cut(s) | 437, 507 |
| CfoI | GCGC | 1 cut(s) | 216 |
| Cfr10I | RCCGGY | 1 cut(s) | 229 |
| Cfr13I | GGNCC | 4 cut(s) | 134, 135, 152, 190 |
| Csp6I | GTAC | 1 cut(s) | 601 |
| CspAI | ACCGGT | 1 cut(s) | 229 |
| CviAII | CATG | 2 cut(s) | 125, 201 |
| CviQI | GTAC | 1 cut(s) | 601 |
| DdeI | CTNAG | 1 cut(s) | 538 |
| EaeI | YGGCCR | 2 cut(s) | 312, 447 |
| EagI | CGGCCG | 1 cut(s) | 447 |
| EciI | GGCGGA | 1 cut(s) | 422 |
| EclXI | CGGCCG | 1 cut(s) | 447 |
| Eco130I | CCWWGG | 1 cut(s) | 124 |
| Eco24I | GRGCYC | 1 cut(s) | 138 |
| Eco31I | GGTCTC | 1 cut(s) | 646 |
| Eco32I | GATATC | 1 cut(s) | 430 |
| Eco47I | GGWCC | 2 cut(s) | 152, 190 |
| Eco52I | CGGCCG | 1 cut(s) | 447 |
| Eco88I | CYCGRG | 1 cut(s) | 473 |
| EcoO109I | RGGNCCY | 3 cut(s) | 134, 152, 190 |
| EcoRII | CCWGG | 1 cut(s) | 483 |
| EcoRV | GATATC | 1 cut(s) | 430 |
| EcoT14I | CCWWGG | 1 cut(s) | 124 |
| EcoT38I | GRGCYC | 1 cut(s) | 138 |
| ErhI | CCWWGG | 1 cut(s) | 124 |
| FaeI | CATG | 2 cut(s) | 128, 204 |
| FaiI | YATR | 7 cut(s) | 126, 202, 467, 582, 584, 609, 611 |
| FatI | CATG | 2 cut(s) | 124, 200 |
| FauNDI | CATATG | 1 cut(s) | 582 |
| Fnu4HI | GCNGC | 2 cut(s) | 341, 534 |
| FokI | GGATG | 4 cut(s) | 209, 367, 551, 599 |
| FriOI | GRGCYC | 1 cut(s) | 138 |
| Fsp4HI | GCNGC | 2 cut(s) | 341, 534 |
| FspBI | CTAG | 1 cut(s) | 480 |
| GlaI | GCGC | 1 cut(s) | 215 |
| GluI | GCNGC | 2 cut(s) | 341, 534 |
| GsuI | CTGGAG | 1 cut(s) | 581 |
| HaeII | RGCGCY | 1 cut(s) | 217 |
| HaeIII | GGCC | 4 cut(s) | 136, 314, 343, 449 |
| HapII | CCGG | 6 cut(s) | 230, 262, 289, 300, 311, 337 |
| HhaI | GCGC | 1 cut(s) | 216 |
| Hin1II | CATG | 2 cut(s) | 128, 204 |
| Hin6I | GCGC | 1 cut(s) | 214 |
| HinP1I | GCGC | 1 cut(s) | 214 |
| HincII | GTYRAC | 4 cut(s) | 235, 246, 256, 267 |
| HindII | GTYRAC | 4 cut(s) | 235, 246, 256, 267 |
| HinfI | GANTC | 5 cut(s) | 29, 456, 469, 574, 590 |
| HpaII | CCGG | 6 cut(s) | 230, 262, 289, 300, 311, 337 |
| Hpy166II | GTNNAC | 4 cut(s) | 235, 246, 256, 267 |
| Hpy188I | TCNGA | 2 cut(s) | 278, 406 |
| Hpy188III | TCNNGA | 3 cut(s) | 33, 425, 473 |
| Hpy8I | GTNNAC | 4 cut(s) | 235, 246, 256, 267 |
| HpyAV | CCTTC | 2 cut(s) | 181, 624 |
| HpyCH4III | ACNGT | 1 cut(s) | 499 |
| HpyCH4IV | ACGT | 4 cut(s) | 140, 178, 219, 489 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 20, 107, 167, 181, 205, 530, 542, 551 |
| HpyF3I | CTNAG | 1 cut(s) | 538 |
| HpySE526I | ACGT | 4 cut(s) | 140, 178, 219, 489 |
| Hsp92II | CATG | 2 cut(s) | 128, 204 |
| HspAI | GCGC | 1 cut(s) | 214 |
| LmnI | GCTCC | 2 cut(s) | 388, 600 |
| Lsp1109I | GCAGC | 1 cut(s) | 545 |
| LweI | GCATC | 2 cut(s) | 217, 448 |
| MaeI | CTAG | 1 cut(s) | 480 |
| MaeII | ACGT | 4 cut(s) | 140, 178, 219, 489 |
| MaeIII | GTNAC | 1 cut(s) | 490 |
| MboII | GAAGA | 3 cut(s) | 54, 80, 629 |
| MhlI | GDGCHC | 1 cut(s) | 138 |
| MluCI | AATT | 2 cut(s) | 330, 371 |
| MlyI | GAGTC | 1 cut(s) | 568 |
| MmeI | TCCRAC | 1 cut(s) | 250 |
| MnlI | CCTC | 4 cut(s) | 25, 125, 143, 272 |
| MslI | CAYNNNNRTG | 3 cut(s) | 199, 569, 585 |
| MspI | CCGG | 6 cut(s) | 230, 262, 289, 300, 311, 337 |
| MspR9I | CCNGG | 3 cut(s) | 262, 290, 485 |
| MvaI | CCWGG | 1 cut(s) | 485 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 20, 107, 167, 181, 205, 530, 542, 551 |
| NciI | CCSGG | 2 cut(s) | 262, 290 |
| NcoI | CCATGG | 1 cut(s) | 124 |
| NdeI | CATATG | 1 cut(s) | 582 |
| NlaIII | CATG | 2 cut(s) | 128, 204 |
| NlaIV | GGNNCC | 3 cut(s) | 136, 154, 192 |
| NmuCI | GTSAC | 1 cut(s) | 490 |
| PaeR7I | CTCGAG | 1 cut(s) | 473 |
| PfeI | GAWTC | 4 cut(s) | 29, 456, 469, 590 |
| PinAI | ACCGGT | 1 cut(s) | 229 |
| PkrI | GCNGC | 2 cut(s) | 342, 535 |
| PleI | GAGTC | 1 cut(s) | 568 |
| PpsI | GAGTC | 1 cut(s) | 568 |
| Ppu21I | YACGTR | 1 cut(s) | 179 |
| PpuMI | RGGWCCY | 2 cut(s) | 152, 190 |
| Psp5II | RGGWCCY | 2 cut(s) | 152, 190 |
| Psp6I | CCWGG | 1 cut(s) | 483 |
| PspGI | CCWGG | 1 cut(s) | 483 |
| PspN4I | GGNNCC | 3 cut(s) | 136, 154, 192 |
| PspOMI | GGGCCC | 1 cut(s) | 134 |
| PspPI | GGNCC | 4 cut(s) | 134, 135, 152, 190 |
| PspPPI | RGGWCCY | 2 cut(s) | 152, 190 |
| RsaI | GTAC | 1 cut(s) | 602 |
| RsaNI | GTAC | 1 cut(s) | 601 |
| RseI | CAYNNNNRTG | 3 cut(s) | 199, 569, 585 |
| SatI | GCNGC | 2 cut(s) | 341, 534 |
| Sau96I | GGNCC | 4 cut(s) | 134, 135, 152, 190 |
| SchI | GAGTC | 1 cut(s) | 568 |
| ScrFI | CCNGG | 3 cut(s) | 262, 290, 485 |
| SduI | GDGCHC | 1 cut(s) | 138 |
| SetI | ASST | 6 cut(s) | 143, 181, 222, 419, 492, 511 |
| SfaNI | GCATC | 2 cut(s) | 217, 448 |
| Sfr274I | CTCGAG | 1 cut(s) | 473 |
| SinI | GGWCC | 2 cut(s) | 152, 190 |
| SlaI | CTCGAG | 1 cut(s) | 473 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 199, 569, 585 |
| SmlI | CTYRAG | 3 cut(s) | 18, 473, 510 |
| SmoI | CTYRAG | 3 cut(s) | 18, 473, 510 |
| Sse9I | AATT | 2 cut(s) | 330, 371 |
| SsiI | CCGC | 3 cut(s) | 159, 340, 433 |
| SspMI | CTAG | 1 cut(s) | 480 |
| StyD4I | CCNGG | 3 cut(s) | 260, 288, 483 |
| StyI | CCWWGG | 1 cut(s) | 124 |
| TaaI | ACNGT | 1 cut(s) | 499 |
| TaiI | ACGT | 4 cut(s) | 143, 181, 222, 492 |
| TaqI | TCGA | 2 cut(s) | 474, 648 |
| TasI | AATT | 2 cut(s) | 330, 371 |
| TauI | GCSGC | 1 cut(s) | 343 |
| TfiI | GAWTC | 4 cut(s) | 29, 456, 469, 590 |
| TscAI | CASTG | 2 cut(s) | 177, 201 |
| TseFI | GTSAC | 1 cut(s) | 490 |
| TseI | GCWGC | 1 cut(s) | 533 |
| Tsp45I | GTSAC | 1 cut(s) | 490 |
| TspDTI | ATGAA | 2 cut(s) | 626, 630 |
| TspRI | CASTG | 2 cut(s) | 177, 201 |
| VpaK11BI | GGWCC | 2 cut(s) | 152, 190 |
| XapI | RAATTY | 1 cut(s) | 330 |
| XhoI | CTCGAG | 1 cut(s) | 473 |
| XspI | CTAG | 1 cut(s) | 480 |