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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 474 |
| AatII | GACGTC | 1 cut(s) | 472 |
| AccII | CGCG | 1 cut(s) | 511 |
| AciI | CCGC | 1 cut(s) | 265 |
| AclI | AACGTT | 1 cut(s) | 57 |
| AclWI | GGATC | 2 cut(s) | 87, 156 |
| AcsI | RAATTY | 1 cut(s) | 387 |
| AcuI | CTGAAG | 2 cut(s) | 104, 216 |
| AcyI | GRCGYC | 1 cut(s) | 469 |
| AfaI | GTAC | 1 cut(s) | 263 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 76, 271 |
| AgsI | TTSAA | 8 cut(s) | 41, 121, 139, 173, 366, 417, 493, 649 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 33, 65, 456, 488 |
| AluBI | AGCT | 5 cut(s) | 23, 200, 307, 587, 620 |
| AluI | AGCT | 5 cut(s) | 23, 200, 307, 587, 620 |
| Alw26I | GTCTC | 2 cut(s) | 654, 668 |
| AlwI | GGATC | 2 cut(s) | 87, 156 |
| Ama87I | CYCGRG | 1 cut(s) | 209 |
| AoxI | GGCC | 6 cut(s) | 368, 517, 526, 550, 559, 577 |
| ApoI | RAATTY | 1 cut(s) | 387 |
| AspLEI | GCGC | 1 cut(s) | 429 |
| AspS9I | GGNCC | 3 cut(s) | 13, 476, 499 |
| AsuC2I | CCSGG | 2 cut(s) | 77, 233 |
| AvaI | CYCGRG | 1 cut(s) | 209 |
| AvaII | GGWCC | 3 cut(s) | 13, 476, 499 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 245, 278 |
| BccI | CCATC | 1 cut(s) | 602 |
| BcnI | CCSGG | 2 cut(s) | 77, 233 |
| BcoDI | GTCTC | 2 cut(s) | 654, 668 |
| BfaI | CTAG | 1 cut(s) | 18 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 525, 558, 567 |
| Bme1390I | CCNGG | 2 cut(s) | 77, 233 |
| Bme18I | GGWCC | 3 cut(s) | 13, 476, 499 |
| BmeT110I | CYCGRG | 1 cut(s) | 209 |
| BmgT120I | GGNCC | 3 cut(s) | 13, 476, 499 |
| BmiI | GGNNCC | 4 cut(s) | 15, 110, 237, 440 |
| BmrFI | CCNGG | 2 cut(s) | 77, 233 |
| BmsI | GCATC | 1 cut(s) | 515 |
| BpuMI | CCSGG | 2 cut(s) | 77, 233 |
| BsaBI | GATNNNNATC | 1 cut(s) | 627 |
| BsaHI | GRCGYC | 1 cut(s) | 469 |
| BsaJI | CCNNGG | 3 cut(s) | 520, 529, 562 |
| BsaWI | WCCGGW | 1 cut(s) | 679 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 76, 271 |
| Bse1I | ACTGG | 1 cut(s) | 282 |
| Bse3DI | GCAATG | 1 cut(s) | 274 |
| Bse8I | GATNNNNATC | 1 cut(s) | 627 |
| BseDI | CCNNGG | 3 cut(s) | 520, 529, 562 |
| BseJI | GATNNNNATC | 1 cut(s) | 627 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 76, 271 |
| BseMI | GCAATG | 1 cut(s) | 274 |
| BseNI | ACTGG | 1 cut(s) | 282 |
| BseRI | GAGGAG | 1 cut(s) | 579 |
| Bsh1236I | CGCG | 1 cut(s) | 511 |
| BshFI | GGCC | 6 cut(s) | 370, 519, 528, 552, 561, 579 |
| BsiHKCI | CYCGRG | 1 cut(s) | 209 |
| BsiSI | CCGG | 3 cut(s) | 77, 233, 680 |
| BslFI | GGGAC | 2 cut(s) | 391, 553 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 76, 271 |
| BsmAI | GTCTC | 2 cut(s) | 654, 668 |
| BsmFI | GGGAC | 2 cut(s) | 391, 553 |
| BsnI | GGCC | 6 cut(s) | 370, 519, 528, 552, 561, 579 |
| BsoBI | CYCGRG | 1 cut(s) | 209 |
| Bsp143I | GATC | 3 cut(s) | 43, 79, 161 |
| Bsp19I | CCATGG | 1 cut(s) | 520 |
| BspACI | CCGC | 1 cut(s) | 265 |
| BspANI | GGCC | 6 cut(s) | 370, 519, 528, 552, 561, 579 |
| BspFNI | CGCG | 1 cut(s) | 511 |
| BspLI | GGNNCC | 4 cut(s) | 15, 110, 237, 440 |
| BspPI | GGATC | 2 cut(s) | 87, 156 |
| BsrDI | GCAATG | 1 cut(s) | 274 |
| BsrI | ACTGG | 1 cut(s) | 282 |
| BssECI | CCNNGG | 3 cut(s) | 520, 529, 562 |
| BssMI | GATC | 3 cut(s) | 43, 79, 161 |
| BssNI | GRCGYC | 1 cut(s) | 469 |
| BssT1I | CCWWGG | 1 cut(s) | 520 |
| Bst4CI | ACNGT | 1 cut(s) | 127 |
| Bst6I | CTCTTC | 1 cut(s) | 550 |
| BstACI | GRCGYC | 1 cut(s) | 469 |
| BstC8I | GCNNGC | 1 cut(s) | 33 |
| BstDSI | CCRYGG | 1 cut(s) | 520 |
| BstFNI | CGCG | 1 cut(s) | 511 |
| BstHHI | GCGC | 1 cut(s) | 429 |
| BstKTI | GATC | 3 cut(s) | 46, 82, 164 |
| BstMAI | GTCTC | 2 cut(s) | 654, 668 |
| BstMBI | GATC | 3 cut(s) | 43, 79, 161 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 525, 558, 567, 576 |
| BstNSI | RCATGY | 1 cut(s) | 208 |
| BstSCI | CCNGG | 2 cut(s) | 75, 231 |
| BstUI | CGCG | 1 cut(s) | 511 |
| BstX2I | RGATCY | 1 cut(s) | 79 |
| BstYI | RGATCY | 1 cut(s) | 79 |
| BsuRI | GGCC | 6 cut(s) | 370, 519, 528, 552, 561, 579 |
| BtgI | CCRYGG | 1 cut(s) | 520 |
| BtgZI | GCGATG | 1 cut(s) | 492 |
| Cac8I | GCNNGC | 1 cut(s) | 33 |
| CfoI | GCGC | 1 cut(s) | 429 |
| Cfr13I | GGNCC | 3 cut(s) | 13, 476, 499 |
| Csp6I | GTAC | 1 cut(s) | 262 |
| CviAII | CATG | 4 cut(s) | 166, 205, 338, 521 |
| CviQI | GTAC | 1 cut(s) | 262 |
| DpnI | GATC | 3 cut(s) | 45, 81, 163 |
| DpnII | GATC | 3 cut(s) | 43, 79, 161 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 474 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 474 |
| Eam1104I | CTCTTC | 1 cut(s) | 550 |
| EarI | CTCTTC | 1 cut(s) | 550 |
| Eco130I | CCWWGG | 1 cut(s) | 520 |
| Eco47I | GGWCC | 3 cut(s) | 13, 476, 499 |
| Eco57I | CTGAAG | 2 cut(s) | 104, 216 |
| Eco88I | CYCGRG | 1 cut(s) | 209 |
| EcoO109I | RGGNCCY | 1 cut(s) | 13 |
| EcoT14I | CCWWGG | 1 cut(s) | 520 |
| ErhI | CCWWGG | 1 cut(s) | 520 |
| FaeI | CATG | 4 cut(s) | 169, 208, 341, 524 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 456, 488 |
| FaqI | GGGAC | 2 cut(s) | 391, 553 |
| FatI | CATG | 4 cut(s) | 165, 204, 337, 520 |
| FspBI | CTAG | 1 cut(s) | 18 |
| GlaI | GCGC | 1 cut(s) | 428 |
| HaeIII | GGCC | 6 cut(s) | 370, 519, 528, 552, 561, 579 |
| HapII | CCGG | 3 cut(s) | 77, 233, 680 |
| HhaI | GCGC | 1 cut(s) | 429 |
| Hin1I | GRCGYC | 1 cut(s) | 469 |
| Hin1II | CATG | 4 cut(s) | 169, 208, 341, 524 |
| Hin6I | GCGC | 1 cut(s) | 427 |
| HinP1I | GCGC | 1 cut(s) | 427 |
| HindIII | AAGCTT | 1 cut(s) | 585 |
| HinfI | GANTC | 2 cut(s) | 247, 662 |
| HpaII | CCGG | 3 cut(s) | 77, 233, 680 |
| Hpy166II | GTNNAC | 1 cut(s) | 182 |
| Hpy188I | TCNGA | 3 cut(s) | 84, 145, 315 |
| Hpy188III | TCNNGA | 3 cut(s) | 211, 392, 493 |
| Hpy8I | GTNNAC | 1 cut(s) | 182 |
| HpyAV | CCTTC | 5 cut(s) | 79, 238, 458, 490, 542 |
| HpyCH4III | ACNGT | 1 cut(s) | 127 |
| HpyCH4IV | ACGT | 2 cut(s) | 57, 469 |
| HpyCH4V | TGCA | 5 cut(s) | 35, 62, 131, 254, 329 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 525, 558, 567, 576 |
| HpySE526I | ACGT | 2 cut(s) | 57, 469 |
| Hsp92I | GRCGYC | 1 cut(s) | 469 |
| Hsp92II | CATG | 4 cut(s) | 169, 208, 341, 524 |
| HspAI | GCGC | 1 cut(s) | 427 |
| Kzo9I | GATC | 3 cut(s) | 43, 79, 161 |
| LmnI | GCTCC | 1 cut(s) | 78 |
| LpnPI | CCDG | 4 cut(s) | 83, 90, 246, 295 |
| LweI | GCATC | 1 cut(s) | 515 |
| MaeI | CTAG | 1 cut(s) | 18 |
| MaeII | ACGT | 2 cut(s) | 57, 469 |
| MaeIII | GTNAC | 2 cut(s) | 53, 190 |
| MalI | GATC | 3 cut(s) | 45, 81, 163 |
| MboI | GATC | 3 cut(s) | 43, 79, 161 |
| MboII | GAAGA | 4 cut(s) | 53, 468, 567, 617 |
| MfeI | CAATTG | 1 cut(s) | 372 |
| MflI | RGATCY | 1 cut(s) | 79 |
| MluCI | AATT | 3 cut(s) | 372, 387, 651 |
| MlyI | GAGTC | 1 cut(s) | 656 |
| MseI | TTAA | 1 cut(s) | 300 |
| MslI | CAYNNNNRTG | 1 cut(s) | 350 |
| MspI | CCGG | 3 cut(s) | 77, 233, 680 |
| MspR9I | CCNGG | 2 cut(s) | 77, 233 |
| MunI | CAATTG | 1 cut(s) | 372 |
| MvnI | CGCG | 1 cut(s) | 511 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 525, 558, 567, 576 |
| NciI | CCSGG | 2 cut(s) | 77, 233 |
| NcoI | CCATGG | 1 cut(s) | 520 |
| NdeII | GATC | 3 cut(s) | 43, 79, 161 |
| NlaIII | CATG | 4 cut(s) | 169, 208, 341, 524 |
| NlaIV | GGNNCC | 4 cut(s) | 15, 110, 237, 440 |
| NmeAIII | GCCGAG | 3 cut(s) | 554, 587, 605 |
| NmuCI | GTSAC | 1 cut(s) | 190 |
| NspI | RCATGY | 1 cut(s) | 208 |
| PaeR7I | CTCGAG | 1 cut(s) | 209 |
| PfeI | GAWTC | 1 cut(s) | 247 |
| PfoI | TCCNGGA | 1 cut(s) | 75 |
| PleI | GAGTC | 1 cut(s) | 656 |
| PpsI | GAGTC | 1 cut(s) | 656 |
| PpuMI | RGGWCCY | 1 cut(s) | 13 |
| Psp1406I | AACGTT | 1 cut(s) | 57 |
| Psp5II | RGGWCCY | 1 cut(s) | 13 |
| PspN4I | GGNNCC | 4 cut(s) | 15, 110, 237, 440 |
| PspPI | GGNCC | 3 cut(s) | 13, 476, 499 |
| PspPPI | RGGWCCY | 1 cut(s) | 13 |
| PsuI | RGATCY | 1 cut(s) | 79 |
| RsaI | GTAC | 1 cut(s) | 263 |
| RsaNI | GTAC | 1 cut(s) | 262 |
| RseI | CAYNNNNRTG | 1 cut(s) | 350 |
| SaqAI | TTAA | 1 cut(s) | 300 |
| Sau3AI | GATC | 3 cut(s) | 43, 79, 161 |
| Sau96I | GGNCC | 3 cut(s) | 13, 476, 499 |
| SchI | GAGTC | 1 cut(s) | 656 |
| ScrFI | CCNGG | 2 cut(s) | 77, 233 |
| SfaNI | GCATC | 1 cut(s) | 515 |
| SfiI | GGCCNNNNNGGCC | 2 cut(s) | 525, 558 |
| Sfr274I | CTCGAG | 1 cut(s) | 209 |
| SinI | GGWCC | 3 cut(s) | 13, 476, 499 |
| SlaI | CTCGAG | 1 cut(s) | 209 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 350 |
| SmlI | CTYRAG | 1 cut(s) | 209 |
| SmoI | CTYRAG | 1 cut(s) | 209 |
| Sse9I | AATT | 3 cut(s) | 372, 387, 651 |
| SsiI | CCGC | 1 cut(s) | 265 |
| SspI | AATATT | 1 cut(s) | 176 |
| SspMI | CTAG | 1 cut(s) | 18 |
| StyD4I | CCNGG | 2 cut(s) | 75, 231 |
| StyI | CCWWGG | 1 cut(s) | 520 |
| TaaI | ACNGT | 1 cut(s) | 127 |
| TaiI | ACGT | 2 cut(s) | 60, 472 |
| TaqI | TCGA | 3 cut(s) | 160, 210, 665 |
| TasI | AATT | 3 cut(s) | 372, 387, 651 |
| TfiI | GAWTC | 1 cut(s) | 247 |
| Tru1I | TTAA | 1 cut(s) | 300 |
| Tru9I | TTAA | 1 cut(s) | 300 |
| TseFI | GTSAC | 1 cut(s) | 190 |
| Tsp45I | GTSAC | 1 cut(s) | 190 |
| TspDTI | ATGAA | 2 cut(s) | 17, 612 |
| VpaK11BI | GGWCC | 3 cut(s) | 13, 476, 499 |
| XapI | RAATTY | 1 cut(s) | 387 |
| XceI | RCATGY | 1 cut(s) | 208 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 509 |
| XhoI | CTCGAG | 1 cut(s) | 209 |
| XspI | CTAG | 1 cut(s) | 18 |
| ZraI | GACGTC | 1 cut(s) | 470 |