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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 179 |
| AciI | CCGC | 1 cut(s) | 301 |
| AclWI | GGATC | 3 cut(s) | 97, 110, 397 |
| AcsI | RAATTY | 1 cut(s) | 368 |
| AfaI | GTAC | 2 cut(s) | 194, 324 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 202 |
| AgsI | TTSAA | 2 cut(s) | 92, 316 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 334 |
| AluBI | AGCT | 4 cut(s) | 24, 119, 140, 501 |
| AluI | AGCT | 4 cut(s) | 24, 119, 140, 501 |
| Alw26I | GTCTC | 2 cut(s) | 32, 436 |
| AlwI | GGATC | 3 cut(s) | 97, 110, 397 |
| Ama87I | CYCGRG | 1 cut(s) | 233 |
| ApeKI | GCWGC | 1 cut(s) | 238 |
| ApoI | RAATTY | 1 cut(s) | 368 |
| AspLEI | GCGC | 3 cut(s) | 50, 81, 181 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AvaI | CYCGRG | 1 cut(s) | 233 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BamHI | GGATCC | 1 cut(s) | 102 |
| BbsI | GAAGAC | 1 cut(s) | 416 |
| BbvI | GCAGC | 1 cut(s) | 250 |
| BccI | CCATC | 4 cut(s) | 92, 155, 282, 358 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 227, 261 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 436 |
| BfaI | CTAG | 2 cut(s) | 35, 477 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 1 cut(s) | 239 |
| BlsI | GCNGC | 1 cut(s) | 240 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 334 |
| BmeT110I | CYCGRG | 1 cut(s) | 233 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 2 cut(s) | 68, 104 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 1 cut(s) | 416 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 13, 45 |
| BsaBI | GATNNNNATC | 1 cut(s) | 401 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 202 |
| Bse8I | GATNNNNATC | 1 cut(s) | 401 |
| BseJI | GATNNNNATC | 1 cut(s) | 401 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 202 |
| BseXI | GCAGC | 1 cut(s) | 250 |
| Bsh1236I | CGCG | 1 cut(s) | 179 |
| BsiHKCI | CYCGRG | 1 cut(s) | 233 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 202 |
| BsmAI | GTCTC | 2 cut(s) | 32, 436 |
| BsmBI | CGTCTC | 1 cut(s) | 436 |
| BsoBI | CYCGRG | 1 cut(s) | 233 |
| Bsp143I | GATC | 3 cut(s) | 102, 402, 482 |
| BspACI | CCGC | 1 cut(s) | 301 |
| BspFNI | CGCG | 1 cut(s) | 179 |
| BspHI | TCATGA | 2 cut(s) | 156, 495 |
| BspLI | GGNNCC | 2 cut(s) | 68, 104 |
| BspPI | GGATC | 3 cut(s) | 97, 110, 397 |
| BssMI | GATC | 3 cut(s) | 102, 402, 482 |
| BstC8I | GCNNGC | 1 cut(s) | 83 |
| BstDEI | CTNAG | 2 cut(s) | 120, 277 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 200 |
| BstFNI | CGCG | 1 cut(s) | 179 |
| BstHHI | GCGC | 3 cut(s) | 50, 81, 181 |
| BstKTI | GATC | 3 cut(s) | 105, 405, 485 |
| BstMAI | GTCTC | 2 cut(s) | 32, 436 |
| BstMBI | GATC | 3 cut(s) | 102, 402, 482 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 137 |
| BstUI | CGCG | 1 cut(s) | 179 |
| BstV1I | GCAGC | 1 cut(s) | 250 |
| BstV2I | GAAGAC | 1 cut(s) | 416 |
| BstX2I | RGATCY | 1 cut(s) | 102 |
| BstYI | RGATCY | 1 cut(s) | 102 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| Cac8I | GCNNGC | 1 cut(s) | 83 |
| CciI | TCATGA | 2 cut(s) | 156, 495 |
| CfoI | GCGC | 3 cut(s) | 50, 81, 181 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| CseI | GACGC | 1 cut(s) | 185 |
| Csp6I | GTAC | 2 cut(s) | 193, 323 |
| CviAII | CATG | 3 cut(s) | 157, 169, 496 |
| CviJI | RGCY | 7 cut(s) | 24, 119, 140, 146, 297, 449, 501 |
| CviKI_1 | RGCY | 7 cut(s) | 24, 119, 140, 146, 297, 449, 501 |
| CviQI | GTAC | 2 cut(s) | 193, 323 |
| DdeI | CTNAG | 2 cut(s) | 120, 277 |
| DpnI | GATC | 3 cut(s) | 104, 404, 484 |
| DpnII | GATC | 3 cut(s) | 102, 402, 482 |
| DriI | GACNNNNNGTC | 1 cut(s) | 334 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 334 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco88I | CYCGRG | 1 cut(s) | 233 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 200 |
| EcoRI | GAATTC | 1 cut(s) | 368 |
| Esp3I | CGTCTC | 1 cut(s) | 436 |
| FaeI | CATG | 3 cut(s) | 160, 172, 499 |
| FaiI | YATR | 6 cut(s) | 158, 170, 223, 294, 362, 497 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 3 cut(s) | 156, 168, 495 |
| Fnu4HI | GCNGC | 1 cut(s) | 239 |
| Fsp4HI | GCNGC | 1 cut(s) | 239 |
| FspBI | CTAG | 2 cut(s) | 35, 477 |
| GlaI | GCGC | 3 cut(s) | 49, 80, 180 |
| GluI | GCNGC | 1 cut(s) | 239 |
| HgaI | GACGC | 1 cut(s) | 185 |
| HhaI | GCGC | 3 cut(s) | 50, 81, 181 |
| Hin1II | CATG | 3 cut(s) | 160, 172, 499 |
| Hin6I | GCGC | 3 cut(s) | 48, 79, 179 |
| HinP1I | GCGC | 3 cut(s) | 48, 79, 179 |
| HinfI | GANTC | 2 cut(s) | 260, 412 |
| Hpy166II | GTNNAC | 1 cut(s) | 377 |
| Hpy188I | TCNGA | 2 cut(s) | 340, 462 |
| Hpy188III | TCNNGA | 5 cut(s) | 106, 157, 272, 406, 496 |
| Hpy8I | GTNNAC | 1 cut(s) | 377 |
| HpyAV | CCTTC | 1 cut(s) | 433 |
| HpyCH4IV | ACGT | 1 cut(s) | 252 |
| HpyCH4V | TGCA | 1 cut(s) | 437 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 137 |
| HpyF3I | CTNAG | 2 cut(s) | 120, 277 |
| HpySE526I | ACGT | 1 cut(s) | 252 |
| Hsp92II | CATG | 3 cut(s) | 160, 172, 499 |
| HspAI | GCGC | 3 cut(s) | 48, 79, 179 |
| Kzo9I | GATC | 3 cut(s) | 102, 402, 482 |
| LmnI | GCTCC | 2 cut(s) | 34, 186 |
| LpnPI | CCDG | 7 cut(s) | 30, 36, 95, 108, 119, 285, 419 |
| Lsp1109I | GCAGC | 1 cut(s) | 250 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 2 cut(s) | 35, 477 |
| MaeII | ACGT | 1 cut(s) | 252 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MalI | GATC | 3 cut(s) | 104, 404, 484 |
| MboI | GATC | 3 cut(s) | 102, 402, 482 |
| MboII | GAAGA | 3 cut(s) | 80, 218, 421 |
| MflI | RGATCY | 1 cut(s) | 102 |
| MluCI | AATT | 1 cut(s) | 368 |
| MlyI | GAGTC | 1 cut(s) | 406 |
| MnlI | CCTC | 3 cut(s) | 196, 206, 308 |
| MslI | CAYNNNNRTG | 2 cut(s) | 155, 171 |
| MvnI | CGCG | 1 cut(s) | 179 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 137 |
| NdeII | GATC | 3 cut(s) | 102, 402, 482 |
| NlaIII | CATG | 3 cut(s) | 160, 172, 499 |
| NlaIV | GGNNCC | 2 cut(s) | 68, 104 |
| PaeR7I | CTCGAG | 1 cut(s) | 233 |
| PagI | TCATGA | 2 cut(s) | 156, 495 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 253 |
| PfeI | GAWTC | 1 cut(s) | 260 |
| PkrI | GCNGC | 1 cut(s) | 240 |
| PleI | GAGTC | 1 cut(s) | 406 |
| PpsI | GAGTC | 1 cut(s) | 406 |
| PspN4I | GGNNCC | 2 cut(s) | 68, 104 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| PspXI | VCTCGAGB | 1 cut(s) | 233 |
| PsuI | RGATCY | 1 cut(s) | 102 |
| RsaI | GTAC | 2 cut(s) | 194, 324 |
| RsaNI | GTAC | 2 cut(s) | 193, 323 |
| RseI | CAYNNNNRTG | 2 cut(s) | 155, 171 |
| SatI | GCNGC | 1 cut(s) | 239 |
| Sau3AI | GATC | 3 cut(s) | 102, 402, 482 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| SchI | GAGTC | 1 cut(s) | 406 |
| SetI | ASST | 9 cut(s) | 12, 26, 97, 121, 142, 198, 255, 425, 503 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 1 cut(s) | 233 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SlaI | CTCGAG | 1 cut(s) | 233 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 155, 171 |
| SmlI | CTYRAG | 1 cut(s) | 233 |
| SmoI | CTYRAG | 1 cut(s) | 233 |
| Sse9I | AATT | 1 cut(s) | 368 |
| SsiI | CCGC | 1 cut(s) | 301 |
| SspMI | CTAG | 2 cut(s) | 35, 477 |
| TaiI | ACGT | 1 cut(s) | 255 |
| TaqI | TCGA | 1 cut(s) | 234 |
| TasI | AATT | 1 cut(s) | 368 |
| TatI | WGTACW | 1 cut(s) | 322 |
| TfiI | GAWTC | 1 cut(s) | 260 |
| TseI | GCWGC | 1 cut(s) | 238 |
| TspDTI | ATGAA | 3 cut(s) | 150, 185, 484 |
| TspGWI | ACGGA | 2 cut(s) | 59, 245 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 200 |
| XapI | RAATTY | 1 cut(s) | 368 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 219 |
| XhoI | CTCGAG | 1 cut(s) | 233 |
| XspI | CTAG | 2 cut(s) | 35, 477 |