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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 372 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 500 |
| AccII | CGCG | 2 cut(s) | 218, 377 |
| AciI | CCGC | 2 cut(s) | 340, 377 |
| AclI | AACGTT | 1 cut(s) | 291 |
| AclWI | GGATC | 1 cut(s) | 492 |
| AcsI | RAATTY | 1 cut(s) | 102 |
| AfaI | GTAC | 2 cut(s) | 138, 324 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 241, 500 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 3 cut(s) | 167, 355, 414 |
| AjnI | CCWGG | 1 cut(s) | 124 |
| AluBI | AGCT | 4 cut(s) | 24, 155, 179, 259 |
| AluI | AGCT | 4 cut(s) | 24, 155, 179, 259 |
| Alw26I | GTCTC | 2 cut(s) | 32, 402 |
| AlwI | GGATC | 1 cut(s) | 492 |
| Ama87I | CYCGRG | 1 cut(s) | 35 |
| ApeKI | GCWGC | 1 cut(s) | 277 |
| ApoI | RAATTY | 1 cut(s) | 102 |
| AspLEI | GCGC | 3 cut(s) | 50, 81, 220 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AsuHPI | GGTGA | 1 cut(s) | 464 |
| AvaI | CYCGRG | 1 cut(s) | 35 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BbsI | GAAGAC | 1 cut(s) | 252 |
| BbvI | GCAGC | 1 cut(s) | 289 |
| BccI | CCATC | 5 cut(s) | 92, 122, 321, 397, 443 |
| BciT130I | CCWGG | 1 cut(s) | 126 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 402 |
| BfaI | CTAG | 2 cut(s) | 272, 458 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BglII | AGATCT | 1 cut(s) | 460 |
| BisI | GCNGC | 1 cut(s) | 278 |
| BlsI | GCNGC | 1 cut(s) | 279 |
| Bme1390I | CCNGG | 1 cut(s) | 126 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmeT110I | CYCGRG | 1 cut(s) | 35 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 1 cut(s) | 68 |
| BmrFI | CCNGG | 1 cut(s) | 126 |
| BpiI | GAAGAC | 1 cut(s) | 252 |
| BsaBI | GATNNNNATC | 2 cut(s) | 453, 459 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 241, 500 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| Bse8I | GATNNNNATC | 2 cut(s) | 453, 459 |
| BseBI | CCWGG | 1 cut(s) | 126 |
| BseGI | GGATG | 1 cut(s) | 114 |
| BseJI | GATNNNNATC | 2 cut(s) | 453, 459 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 241, 500 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseXI | GCAGC | 1 cut(s) | 289 |
| Bsh1236I | CGCG | 2 cut(s) | 218, 377 |
| BsiHKCI | CYCGRG | 1 cut(s) | 35 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 241, 500 |
| BsmAI | GTCTC | 2 cut(s) | 32, 402 |
| BsoBI | CYCGRG | 1 cut(s) | 35 |
| Bsp143I | GATC | 4 cut(s) | 442, 454, 460, 484 |
| BspACI | CCGC | 2 cut(s) | 340, 377 |
| BspFNI | CGCG | 2 cut(s) | 218, 377 |
| BspHI | TCATGA | 1 cut(s) | 195 |
| BspLI | GGNNCC | 1 cut(s) | 68 |
| BspPI | GGATC | 1 cut(s) | 492 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssMI | GATC | 4 cut(s) | 442, 454, 460, 484 |
| Bst2UI | CCWGG | 1 cut(s) | 126 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 239 |
| BstF5I | GGATG | 1 cut(s) | 114 |
| BstFNI | CGCG | 2 cut(s) | 218, 377 |
| BstHHI | GCGC | 3 cut(s) | 50, 81, 220 |
| BstKTI | GATC | 4 cut(s) | 445, 457, 463, 487 |
| BstMAI | GTCTC | 2 cut(s) | 32, 402 |
| BstMBI | GATC | 4 cut(s) | 442, 454, 460, 484 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| BstNI | CCWGG | 1 cut(s) | 126 |
| BstSCI | CCNGG | 1 cut(s) | 124 |
| BstUI | CGCG | 2 cut(s) | 218, 377 |
| BstV1I | GCAGC | 1 cut(s) | 289 |
| BstV2I | GAAGAC | 1 cut(s) | 252 |
| BstX2I | RGATCY | 1 cut(s) | 460 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 125 |
| BstYI | RGATCY | 1 cut(s) | 460 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BtsCI | GGATG | 1 cut(s) | 114 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 195 |
| CfoI | GCGC | 3 cut(s) | 50, 81, 220 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| CseI | GACGC | 1 cut(s) | 224 |
| Csp6I | GTAC | 2 cut(s) | 137, 323 |
| CviAII | CATG | 3 cut(s) | 196, 208, 430 |
| CviQI | GTAC | 2 cut(s) | 137, 323 |
| DpnI | GATC | 4 cut(s) | 444, 456, 462, 486 |
| DpnII | GATC | 4 cut(s) | 442, 454, 460, 484 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco88I | CYCGRG | 1 cut(s) | 35 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 239 |
| EcoRI | GAATTC | 1 cut(s) | 102 |
| EcoRII | CCWGG | 1 cut(s) | 124 |
| FaeI | CATG | 3 cut(s) | 199, 211, 433 |
| FaiI | YATR | 8 cut(s) | 60, 188, 197, 209, 262, 333, 372, 431 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 3 cut(s) | 195, 207, 429 |
| Fnu4HI | GCNGC | 1 cut(s) | 278 |
| FokI | GGATG | 1 cut(s) | 101 |
| Fsp4HI | GCNGC | 1 cut(s) | 278 |
| FspBI | CTAG | 2 cut(s) | 272, 458 |
| GlaI | GCGC | 3 cut(s) | 49, 80, 219 |
| GluI | GCNGC | 1 cut(s) | 278 |
| HgaI | GACGC | 1 cut(s) | 224 |
| HhaI | GCGC | 3 cut(s) | 50, 81, 220 |
| Hin1II | CATG | 3 cut(s) | 199, 211, 433 |
| Hin6I | GCGC | 3 cut(s) | 48, 79, 218 |
| HinP1I | GCGC | 3 cut(s) | 48, 79, 218 |
| HinfI | GANTC | 1 cut(s) | 299 |
| HphI | GGTGA | 1 cut(s) | 464 |
| Hpy188I | TCNGA | 3 cut(s) | 71, 132, 402 |
| Hpy188III | TCNNGA | 8 cut(s) | 37, 107, 196, 296, 311, 446, 458, 488 |
| HpyAV | CCTTC | 1 cut(s) | 467 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 291 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| HpySE526I | ACGT | 2 cut(s) | 135, 291 |
| Hsp92II | CATG | 3 cut(s) | 199, 211, 433 |
| HspAI | GCGC | 3 cut(s) | 48, 79, 218 |
| Kzo9I | GATC | 4 cut(s) | 442, 454, 460, 484 |
| LmnI | GCTCC | 1 cut(s) | 225 |
| LpnPI | CCDG | 9 cut(s) | 23, 30, 36, 92, 111, 138, 317, 324, 507 |
| Lsp1109I | GCAGC | 1 cut(s) | 289 |
| MaeI | CTAG | 2 cut(s) | 272, 458 |
| MaeII | ACGT | 2 cut(s) | 135, 291 |
| MaeIII | GTNAC | 2 cut(s) | 5, 296 |
| MalI | GATC | 4 cut(s) | 444, 456, 462, 486 |
| MboI | GATC | 4 cut(s) | 442, 454, 460, 484 |
| MboII | GAAGA | 2 cut(s) | 257, 452 |
| MfeI | CAATTG | 1 cut(s) | 144 |
| MflI | RGATCY | 1 cut(s) | 460 |
| MluCI | AATT | 5 cut(s) | 102, 144, 189, 424, 498 |
| MlyI | GAGTC | 1 cut(s) | 293 |
| MnlI | CCTC | 4 cut(s) | 235, 245, 347, 373 |
| MseI | TTAA | 2 cut(s) | 90, 514 |
| MslI | CAYNNNNRTG | 1 cut(s) | 210 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspR9I | CCNGG | 1 cut(s) | 126 |
| MunI | CAATTG | 1 cut(s) | 144 |
| MvaI | CCWGG | 1 cut(s) | 126 |
| MvnI | CGCG | 2 cut(s) | 218, 377 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| NdeII | GATC | 4 cut(s) | 442, 454, 460, 484 |
| NlaIII | CATG | 3 cut(s) | 199, 211, 433 |
| NlaIV | GGNNCC | 1 cut(s) | 68 |
| NmuCI | GTSAC | 1 cut(s) | 296 |
| PaeR7I | CTCGAG | 1 cut(s) | 35 |
| PagI | TCATGA | 1 cut(s) | 195 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 500 |
| PkrI | GCNGC | 1 cut(s) | 279 |
| PleI | GAGTC | 1 cut(s) | 293 |
| PpsI | GAGTC | 1 cut(s) | 293 |
| PsiI | TTATAA | 1 cut(s) | 372 |
| Psp1406I | AACGTT | 1 cut(s) | 291 |
| Psp6I | CCWGG | 1 cut(s) | 124 |
| PspGI | CCWGG | 1 cut(s) | 124 |
| PspN4I | GGNNCC | 1 cut(s) | 68 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| PsuI | RGATCY | 1 cut(s) | 460 |
| RsaI | GTAC | 2 cut(s) | 138, 324 |
| RsaNI | GTAC | 2 cut(s) | 137, 323 |
| RseI | CAYNNNNRTG | 1 cut(s) | 210 |
| SaqAI | TTAA | 2 cut(s) | 90, 514 |
| SatI | GCNGC | 1 cut(s) | 278 |
| Sau3AI | GATC | 4 cut(s) | 442, 454, 460, 484 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| SchI | GAGTC | 1 cut(s) | 293 |
| ScrFI | CCNGG | 1 cut(s) | 126 |
| Sfr274I | CTCGAG | 1 cut(s) | 35 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SlaI | CTCGAG | 1 cut(s) | 35 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 210 |
| SmlI | CTYRAG | 2 cut(s) | 35, 89 |
| SmoI | CTYRAG | 2 cut(s) | 35, 89 |
| Sse9I | AATT | 5 cut(s) | 102, 144, 189, 424, 498 |
| SsiI | CCGC | 2 cut(s) | 340, 377 |
| SspMI | CTAG | 2 cut(s) | 272, 458 |
| StyD4I | CCNGG | 1 cut(s) | 124 |
| TaiI | ACGT | 2 cut(s) | 138, 294 |
| TaqI | TCGA | 1 cut(s) | 36 |
| TasI | AATT | 5 cut(s) | 102, 144, 189, 424, 498 |
| Tru1I | TTAA | 2 cut(s) | 90, 514 |
| Tru9I | TTAA | 2 cut(s) | 90, 514 |
| TseFI | GTSAC | 1 cut(s) | 296 |
| TseI | GCWGC | 1 cut(s) | 277 |
| Tsp45I | GTSAC | 1 cut(s) | 296 |
| TspDTI | ATGAA | 2 cut(s) | 224, 243 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 500 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 239 |
| XapI | RAATTY | 1 cut(s) | 102 |
| XbaI | TCTAGA | 1 cut(s) | 457 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 258 |
| XhoI | CTCGAG | 1 cut(s) | 35 |
| XspI | CTAG | 2 cut(s) | 272, 458 |