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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 479 |
| AciI | CCGC | 2 cut(s) | 145, 621 |
| AcoI | YGGCCR | 1 cut(s) | 466 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AgsI | TTSAA | 3 cut(s) | 160, 392, 517 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 2 cut(s) | 346, 356 |
| AluI | AGCT | 2 cut(s) | 346, 356 |
| Alw21I | GWGCWC | 1 cut(s) | 348 |
| Alw26I | GTCTC | 1 cut(s) | 76 |
| AoxI | GGCC | 1 cut(s) | 466 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 1 cut(s) | 523 |
| AsuHPI | GGTGA | 1 cut(s) | 610 |
| BaeGI | GKGCMC | 1 cut(s) | 589 |
| BalI | TGGCCA | 1 cut(s) | 468 |
| BanI | GGYRCC | 1 cut(s) | 479 |
| BanII | GRGCYC | 1 cut(s) | 348 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| Bbv12I | GWGCWC | 1 cut(s) | 348 |
| BccI | CCATC | 1 cut(s) | 280 |
| BcoDI | GTCTC | 1 cut(s) | 76 |
| BfaI | CTAG | 2 cut(s) | 122, 689 |
| BfoI | RGCGCY | 1 cut(s) | 524 |
| BmiI | GGNNCC | 1 cut(s) | 481 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| BseGI | GGATG | 2 cut(s) | 22, 384 |
| BseMII | CTCAG | 1 cut(s) | 195 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseSI | GKGCMC | 1 cut(s) | 589 |
| BshFI | GGCC | 1 cut(s) | 468 |
| BshNI | GGYRCC | 1 cut(s) | 479 |
| BsiHKAI | GWGCWC | 1 cut(s) | 348 |
| BsmAI | GTCTC | 1 cut(s) | 76 |
| BsnI | GGCC | 1 cut(s) | 468 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 2 cut(s) | 348, 589 |
| Bsp143I | GATC | 3 cut(s) | 228, 673, 685 |
| BspACI | CCGC | 2 cut(s) | 145, 621 |
| BspANI | GGCC | 1 cut(s) | 468 |
| BspCNI | CTCAG | 1 cut(s) | 194 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 1 cut(s) | 481 |
| BspT107I | GGYRCC | 1 cut(s) | 479 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssMI | GATC | 3 cut(s) | 228, 673, 685 |
| Bst4CI | ACNGT | 1 cut(s) | 512 |
| Bst6I | CTCTTC | 1 cut(s) | 421 |
| BstDEI | CTNAG | 3 cut(s) | 181, 294, 492 |
| BstF5I | GGATG | 2 cut(s) | 22, 384 |
| BstH2I | RGCGCY | 1 cut(s) | 524 |
| BstHHI | GCGC | 1 cut(s) | 523 |
| BstKTI | GATC | 3 cut(s) | 231, 676, 688 |
| BstMAI | GTCTC | 1 cut(s) | 76 |
| BstMBI | GATC | 3 cut(s) | 228, 673, 685 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 629 |
| BstSLI | GKGCMC | 1 cut(s) | 589 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 476 |
| BsuRI | GGCC | 1 cut(s) | 468 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 2 cut(s) | 22, 384 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 1 cut(s) | 523 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 2 cut(s) | 341, 470 |
| CviJI | RGCY | 5 cut(s) | 64, 141, 346, 356, 468 |
| CviKI_1 | RGCY | 5 cut(s) | 64, 141, 346, 356, 468 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 3 cut(s) | 181, 294, 492 |
| DpnI | GATC | 3 cut(s) | 230, 675, 687 |
| DpnII | GATC | 3 cut(s) | 228, 673, 685 |
| EaeI | YGGCCR | 1 cut(s) | 466 |
| Eam1104I | CTCTTC | 1 cut(s) | 421 |
| EarI | CTCTTC | 1 cut(s) | 421 |
| Ecl136II | GAGCTC | 1 cut(s) | 346 |
| Eco24I | GRGCYC | 1 cut(s) | 348 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 1 cut(s) | 346 |
| EcoICRI | GAGCTC | 1 cut(s) | 346 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoT38I | GRGCYC | 1 cut(s) | 348 |
| FaeI | CATG | 2 cut(s) | 344, 473 |
| FatI | CATG | 2 cut(s) | 340, 469 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 2 cut(s) | 29, 371 |
| FriOI | GRGCYC | 1 cut(s) | 348 |
| FspBI | CTAG | 2 cut(s) | 122, 689 |
| GlaI | GCGC | 1 cut(s) | 522 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 1 cut(s) | 524 |
| HaeIII | GGCC | 1 cut(s) | 468 |
| HhaI | GCGC | 1 cut(s) | 523 |
| Hin1II | CATG | 2 cut(s) | 344, 473 |
| Hin6I | GCGC | 1 cut(s) | 521 |
| HinP1I | GCGC | 1 cut(s) | 521 |
| HinfI | GANTC | 7 cut(s) | 4, 20, 104, 256, 327, 421, 496 |
| HphI | GGTGA | 1 cut(s) | 610 |
| Hpy166II | GTNNAC | 2 cut(s) | 434, 655 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 577 |
| Hpy188III | TCNNGA | 8 cut(s) | 116, 170, 303, 341, 561, 605, 677, 689 |
| Hpy8I | GTNNAC | 2 cut(s) | 434, 655 |
| HpyAV | CCTTC | 2 cut(s) | 54, 386 |
| HpyCH4III | ACNGT | 1 cut(s) | 512 |
| HpyCH4IV | ACGT | 2 cut(s) | 96, 436 |
| HpyCH4V | TGCA | 2 cut(s) | 281, 320 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 629 |
| HpyF3I | CTNAG | 3 cut(s) | 181, 294, 492 |
| HpySE526I | ACGT | 2 cut(s) | 96, 436 |
| Hsp92II | CATG | 2 cut(s) | 344, 473 |
| HspAI | GCGC | 1 cut(s) | 521 |
| Kzo9I | GATC | 3 cut(s) | 228, 673, 685 |
| LmnI | GCTCC | 2 cut(s) | 30, 353 |
| LpnPI | CCDG | 5 cut(s) | 41, 70, 122, 129, 450 |
| MaeI | CTAG | 2 cut(s) | 122, 689 |
| MaeII | ACGT | 2 cut(s) | 96, 436 |
| MaeIII | GTNAC | 4 cut(s) | 92, 101, 313, 616 |
| MalI | GATC | 3 cut(s) | 230, 675, 687 |
| MboI | GATC | 3 cut(s) | 228, 673, 685 |
| MboII | GAAGA | 9 cut(s) | 59, 62, 92, 265, 336, 438, 620, 683, 692 |
| MhlI | GDGCHC | 2 cut(s) | 348, 589 |
| MlsI | TGGCCA | 1 cut(s) | 468 |
| MluCI | AATT | 3 cut(s) | 212, 306, 612 |
| MluNI | TGGCCA | 1 cut(s) | 468 |
| MlyI | GAGTC | 3 cut(s) | 98, 250, 505 |
| MnlI | CCTC | 5 cut(s) | 152, 422, 442, 446, 472 |
| Mox20I | TGGCCA | 1 cut(s) | 468 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 468 |
| MseI | TTAA | 2 cut(s) | 198, 206 |
| MslI | CAYNNNNRTG | 3 cut(s) | 15, 474, 504 |
| Msp20I | TGGCCA | 1 cut(s) | 468 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 629 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 228, 673, 685 |
| NlaIII | CATG | 2 cut(s) | 344, 473 |
| NlaIV | GGNNCC | 1 cut(s) | 481 |
| NmuCI | GTSAC | 2 cut(s) | 101, 616 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 3 cut(s) | 20, 327, 421 |
| PleI | GAGTC | 3 cut(s) | 98, 250, 504 |
| PpsI | GAGTC | 3 cut(s) | 98, 250, 504 |
| Psp124BI | GAGCTC | 1 cut(s) | 348 |
| PspN4I | GGNNCC | 1 cut(s) | 481 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 3 cut(s) | 15, 474, 504 |
| SacI | GAGCTC | 1 cut(s) | 348 |
| SaqAI | TTAA | 2 cut(s) | 198, 206 |
| Sau3AI | GATC | 3 cut(s) | 228, 673, 685 |
| SchI | GAGTC | 3 cut(s) | 98, 250, 505 |
| SduI | GDGCHC | 2 cut(s) | 348, 589 |
| SetI | ASST | 8 cut(s) | 99, 123, 338, 348, 358, 397, 433, 439 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 15, 474, 504 |
| Sse9I | AATT | 3 cut(s) | 212, 306, 612 |
| SsiI | CCGC | 2 cut(s) | 145, 621 |
| SspMI | CTAG | 2 cut(s) | 122, 689 |
| SstI | GAGCTC | 1 cut(s) | 348 |
| TaaI | ACNGT | 1 cut(s) | 512 |
| TaiI | ACGT | 2 cut(s) | 99, 439 |
| TaqI | TCGA | 4 cut(s) | 78, 304, 424, 562 |
| TasI | AATT | 3 cut(s) | 212, 306, 612 |
| TfiI | GAWTC | 3 cut(s) | 20, 327, 421 |
| Tru1I | TTAA | 2 cut(s) | 198, 206 |
| Tru9I | TTAA | 2 cut(s) | 198, 206 |
| TseFI | GTSAC | 2 cut(s) | 101, 616 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 616 |
| TspDTI | ATGAA | 4 cut(s) | 56, 60, 329, 374 |
| TspGWI | ACGGA | 2 cut(s) | 89, 433 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XbaI | TCTAGA | 1 cut(s) | 688 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 122, 689 |