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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1149, 1194 |
| Acc36I | ACCTGC | 2 cut(s) | 183, 370 |
| Acc65I | GGTACC | 1 cut(s) | 1224 |
| AccB1I | GGYRCC | 2 cut(s) | 1224, 1391 |
| AccBSI | CCGCTC | 1 cut(s) | 1222 |
| AccII | CGCG | 2 cut(s) | 599, 601 |
| AclWI | GGATC | 3 cut(s) | 705, 1082, 1489 |
| AcuI | CTGAAG | 3 cut(s) | 397, 1077, 1656 |
| AcvI | CACGTG | 2 cut(s) | 1313, 1331 |
| AcyI | GRCGYC | 1 cut(s) | 754 |
| AdeI | CACNNNGTG | 2 cut(s) | 1316, 1430 |
| AfaI | GTAC | 3 cut(s) | 146, 1054, 1226 |
| AfeI | AGCGCT | 2 cut(s) | 822, 833 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 212, 957, 1208, 1209, 1235, 1279, 1332, 1405 |
| AflIII | ACRYGT | 3 cut(s) | 32, 1310, 1328 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 907, 974 |
| AjnI | CCWGG | 3 cut(s) | 211, 681, 1278 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 610, 642, 819, 851 |
| AleI | CACNNNNGTG | 1 cut(s) | 600 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 689, 721 |
| Alw21I | GWGCWC | 3 cut(s) | 1426, 1435, 1650 |
| Alw26I | GTCTC | 1 cut(s) | 1545 |
| Alw44I | GTGCAC | 3 cut(s) | 1422, 1431, 1646 |
| AlwI | GGATC | 3 cut(s) | 705, 1082, 1489 |
| Aor51HI | AGCGCT | 2 cut(s) | 822, 833 |
| AoxI | GGCC | 6 cut(s) | 279, 288, 403, 427, 1157, 1258 |
| ApaI | GGGCCC | 1 cut(s) | 1262 |
| ApaLI | GTGCAC | 3 cut(s) | 1422, 1431, 1646 |
| ApeKI | GCWGC | 8 cut(s) | 16, 38, 336, 347, 387, 437, 460, 1529 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 936 |
| Asp718I | GGTACC | 1 cut(s) | 1224 |
| AspA2I | CCTAGG | 1 cut(s) | 1403 |
| AspLEI | GCGC | 6 cut(s) | 304, 601, 823, 834, 894, 1215 |
| AspS9I | GGNCC | 6 cut(s) | 280, 428, 686, 1158, 1258, 1259 |
| AsuC2I | CCSGG | 1 cut(s) | 695 |
| AsuHPI | GGTGA | 1 cut(s) | 1606 |
| AvaII | GGWCC | 1 cut(s) | 686 |
| AvrII | CCTAGG | 1 cut(s) | 1403 |
| AxyI | CCTNAGG | 1 cut(s) | 1139 |
| BaeGI | GKGCMC | 4 cut(s) | 1262, 1426, 1435, 1650 |
| BanI | GGYRCC | 2 cut(s) | 1224, 1391 |
| BanII | GRGCYC | 1 cut(s) | 1262 |
| BauI | CACGAG | 2 cut(s) | 6, 1078 |
| BbrPI | CACGTG | 2 cut(s) | 1313, 1331 |
| BbsI | GAAGAC | 3 cut(s) | 502, 581, 598 |
| Bbv12I | GWGCWC | 3 cut(s) | 1426, 1435, 1650 |
| BbvI | GCAGC | 8 cut(s) | 3, 50, 323, 359, 374, 447, 449, 1516 |
| BccI | CCATC | 4 cut(s) | 291, 657, 1095, 1589 |
| BceAI | ACGGC | 1 cut(s) | 1344 |
| BciT130I | CCWGG | 3 cut(s) | 213, 683, 1280 |
| BciVI | GTATCC | 2 cut(s) | 1300, 1361 |
| BcnI | CCSGG | 1 cut(s) | 695 |
| BcoDI | GTCTC | 1 cut(s) | 1545 |
| BfaI | CTAG | 5 cut(s) | 242, 824, 1356, 1404, 1526 |
| BfmI | CTRYAG | 4 cut(s) | 435, 461, 1110, 1537 |
| BfoI | RGCGCY | 3 cut(s) | 305, 824, 835 |
| BfuAI | ACCTGC | 2 cut(s) | 183, 370 |
| BfuI | GTATCC | 2 cut(s) | 1300, 1361 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 287 |
| BlnI | CCTAGG | 1 cut(s) | 1403 |
| Bme1390I | CCNGG | 4 cut(s) | 213, 683, 695, 1280 |
| Bme18I | GGWCC | 1 cut(s) | 686 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 907, 974 |
| BmgT120I | GGNCC | 6 cut(s) | 280, 428, 686, 1158, 1258, 1259 |
| BmiI | GGNNCC | 6 cut(s) | 204, 687, 1085, 1226, 1260, 1393 |
| BmrFI | CCNGG | 4 cut(s) | 213, 683, 695, 1280 |
| BmsI | GCATC | 4 cut(s) | 167, 598, 738, 1645 |
| BpiI | GAAGAC | 3 cut(s) | 502, 581, 598 |
| BpmI | CTGGAG | 1 cut(s) | 282 |
| Bpu10I | CCTNAGC | 1 cut(s) | 252 |
| BpuEI | CTTGAG | 1 cut(s) | 717 |
| BpuMI | CCSGG | 1 cut(s) | 695 |
| Bsa29I | ATCGAT | 1 cut(s) | 1474 |
| BsaAI | YACGTR | 2 cut(s) | 1313, 1331 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1480, 1608 |
| BsaHI | GRCGYC | 1 cut(s) | 754 |
| BsaJI | CCNNGG | 2 cut(s) | 682, 1403 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 773, 803, 1327, 1357, 1384, 1414 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 212, 957, 1208, 1209, 1235, 1279, 1332, 1405 |
| Bse118I | RCCGGY | 1 cut(s) | 425 |
| Bse21I | CCTNAGG | 1 cut(s) | 1139 |
| Bse3DI | GCAATG | 4 cut(s) | 91, 847, 1465, 1511 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1480, 1608 |
| BseBI | CCWGG | 3 cut(s) | 213, 683, 1280 |
| BseCI | ATCGAT | 1 cut(s) | 1474 |
| BseDI | CCNNGG | 2 cut(s) | 682, 1403 |
| BseGI | GGATG | 3 cut(s) | 158, 283, 1660 |
| BseJI | GATNNNNATC | 2 cut(s) | 1480, 1608 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 212, 957, 1208, 1209, 1235, 1279, 1332, 1405 |
| BseMI | GCAATG | 4 cut(s) | 91, 847, 1465, 1511 |
| BseMII | CTCAG | 4 cut(s) | 266, 787, 1107, 1130 |
| BseRI | GAGGAG | 1 cut(s) | 848 |
| BseSI | GKGCMC | 4 cut(s) | 1262, 1426, 1435, 1650 |
| BseXI | GCAGC | 8 cut(s) | 3, 50, 323, 359, 374, 447, 449, 1516 |
| BseYI | CCCAGC | 2 cut(s) | 224, 391 |
| BsgI | GTGCAG | 3 cut(s) | 6, 57, 348 |
| Bsh1236I | CGCG | 2 cut(s) | 599, 601 |
| BshFI | GGCC | 6 cut(s) | 281, 290, 405, 429, 1159, 1260 |
| BshNI | GGYRCC | 2 cut(s) | 1224, 1391 |
| BshVI | ATCGAT | 1 cut(s) | 1474 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1426, 1435, 1650 |
| BsiSI | CCGG | 3 cut(s) | 287, 426, 695 |
| BslFI | GGGAC | 3 cut(s) | 699, 1254, 1263 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 212, 957, 1208, 1209, 1235, 1279, 1332, 1405 |
| BsmAI | GTCTC | 1 cut(s) | 1545 |
| BsmFI | GGGAC | 3 cut(s) | 699, 1254, 1263 |
| BsnI | GGCC | 6 cut(s) | 281, 290, 405, 429, 1159, 1260 |
| Bsp120I | GGGCCC | 1 cut(s) | 1258 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1262, 1426, 1435, 1650 |
| Bsp143I | GATC | 5 cut(s) | 465, 697, 792, 1074, 1481 |
| BspANI | GGCC | 6 cut(s) | 281, 290, 405, 429, 1159, 1260 |
| BspCNI | CTCAG | 4 cut(s) | 265, 786, 1108, 1131 |
| BspDI | ATCGAT | 1 cut(s) | 1474 |
| BspFNI | CGCG | 2 cut(s) | 599, 601 |
| BspLI | GGNNCC | 6 cut(s) | 204, 687, 1085, 1226, 1260, 1393 |
| BspMAI | CTGCAG | 2 cut(s) | 439, 465 |
| BspMI | ACCTGC | 2 cut(s) | 183, 370 |
| BspPI | GGATC | 3 cut(s) | 705, 1082, 1489 |
| BspQI | GCTCTTC | 2 cut(s) | 822, 942 |
| BspT107I | GGYRCC | 2 cut(s) | 1224, 1391 |
| BsrBI | CCGCTC | 1 cut(s) | 1222 |
| BsrDI | GCAATG | 4 cut(s) | 91, 847, 1465, 1511 |
| BsrFI | RCCGGY | 1 cut(s) | 425 |
| BssAI | RCCGGY | 1 cut(s) | 425 |
| BssECI | CCNNGG | 2 cut(s) | 682, 1403 |
| BssMI | GATC | 5 cut(s) | 465, 697, 792, 1074, 1481 |
| BssNI | GRCGYC | 1 cut(s) | 754 |
| BssSI | CACGAG | 2 cut(s) | 6, 1078 |
| BssT1I | CCWWGG | 1 cut(s) | 1403 |
| Bst2BI | CACGAG | 2 cut(s) | 6, 1078 |
| Bst2UI | CCWGG | 3 cut(s) | 213, 683, 1280 |
| Bst4CI | ACNGT | 4 cut(s) | 110, 170, 948, 1052 |
| Bst6I | CTCTTC | 3 cut(s) | 298, 822, 942 |
| BstACI | GRCGYC | 1 cut(s) | 754 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1430 |
| BstBAI | YACGTR | 2 cut(s) | 1313, 1331 |
| BstDEI | CTNAG | 7 cut(s) | 119, 252, 614, 773, 1116, 1139, 1230 |
| BstEII | GGTNACC | 1 cut(s) | 631 |
| BstF5I | GGATG | 3 cut(s) | 158, 283, 1660 |
| BstFNI | CGCG | 2 cut(s) | 599, 601 |
| BstH2I | RGCGCY | 3 cut(s) | 305, 824, 835 |
| BstHHI | GCGC | 6 cut(s) | 304, 601, 823, 834, 894, 1215 |
| BstKTI | GATC | 5 cut(s) | 468, 700, 795, 1077, 1484 |
| BstMAI | GTCTC | 1 cut(s) | 1545 |
| BstMBI | GATC | 5 cut(s) | 465, 697, 792, 1074, 1481 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 287, 333, 443, 829, 1219, 1430, 1515 |
| BstNI | CCWGG | 3 cut(s) | 213, 683, 1280 |
| BstNSI | RCATGY | 2 cut(s) | 36, 731 |
| BstPI | GGTNACC | 1 cut(s) | 631 |
| BstSCI | CCNGG | 4 cut(s) | 211, 681, 693, 1278 |
| BstSFI | CTRYAG | 4 cut(s) | 435, 461, 1110, 1537 |
| BstSLI | GKGCMC | 4 cut(s) | 1262, 1426, 1435, 1650 |
| BstUI | CGCG | 2 cut(s) | 599, 601 |
| BstV1I | GCAGC | 8 cut(s) | 3, 50, 323, 359, 374, 447, 449, 1516 |
| BstV2I | GAAGAC | 3 cut(s) | 502, 581, 598 |
| BstX2I | RGATCY | 1 cut(s) | 697 |
| BstYI | RGATCY | 1 cut(s) | 697 |
| Bsu15I | ATCGAT | 1 cut(s) | 1474 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1139 |
| BsuI | GTATCC | 2 cut(s) | 1300, 1361 |
| BsuRI | GGCC | 6 cut(s) | 281, 290, 405, 429, 1159, 1260 |
| BsuTUI | ATCGAT | 1 cut(s) | 1474 |
| BtsCI | GGATG | 3 cut(s) | 158, 283, 1660 |
| BtsI | GCAGTG | 1 cut(s) | 331 |
| BtsIMutI | CAGTG | 2 cut(s) | 147, 331 |
| BveI | ACCTGC | 2 cut(s) | 183, 370 |
| CfoI | GCGC | 6 cut(s) | 304, 601, 823, 834, 894, 1215 |
| Cfr10I | RCCGGY | 1 cut(s) | 425 |
| Cfr13I | GGNCC | 6 cut(s) | 280, 428, 686, 1158, 1258, 1259 |
| ClaI | ATCGAT | 1 cut(s) | 1474 |
| CseI | GACGC | 1 cut(s) | 762 |
| CsiI | ACCWGGT | 1 cut(s) | 211 |
| Csp6I | GTAC | 3 cut(s) | 145, 1053, 1225 |
| CviAII | CATG | 7 cut(s) | 33, 136, 728, 952, 1124, 1555, 1651 |
| CviQI | GTAC | 3 cut(s) | 145, 1053, 1225 |
| DdeI | CTNAG | 7 cut(s) | 119, 252, 614, 773, 1116, 1139, 1230 |
| DpnI | GATC | 5 cut(s) | 467, 699, 794, 1076, 1483 |
| DpnII | GATC | 5 cut(s) | 465, 697, 792, 1074, 1481 |
| DraIII | CACNNNGTG | 2 cut(s) | 1316, 1430 |
| DriI | GACNNNNNGTC | 2 cut(s) | 907, 974 |
| Eam1104I | CTCTTC | 3 cut(s) | 298, 822, 942 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 907, 974 |
| EarI | CTCTTC | 3 cut(s) | 298, 822, 942 |
| Eco130I | CCWWGG | 1 cut(s) | 1403 |
| Eco24I | GRGCYC | 1 cut(s) | 1262 |
| Eco47I | GGWCC | 1 cut(s) | 686 |
| Eco47III | AGCGCT | 2 cut(s) | 822, 833 |
| Eco57I | CTGAAG | 3 cut(s) | 397, 1077, 1656 |
| Eco72I | CACGTG | 2 cut(s) | 1313, 1331 |
| Eco81I | CCTNAGG | 1 cut(s) | 1139 |
| Eco91I | GGTNACC | 1 cut(s) | 631 |
| EcoO109I | RGGNCCY | 1 cut(s) | 686 |
| EcoO65I | GGTNACC | 1 cut(s) | 631 |
| EcoRII | CCWGG | 3 cut(s) | 211, 681, 1278 |
| EcoT14I | CCWWGG | 1 cut(s) | 1403 |
| EcoT38I | GRGCYC | 1 cut(s) | 1262 |
| ErhI | CCWWGG | 1 cut(s) | 1403 |
| FaeI | CATG | 7 cut(s) | 36, 139, 731, 955, 1127, 1558, 1654 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1560, 1592 |
| FaqI | GGGAC | 3 cut(s) | 699, 1254, 1263 |
| FatI | CATG | 7 cut(s) | 32, 135, 727, 951, 1123, 1554, 1650 |
| FauI | CCCGC | 3 cut(s) | 359, 438, 1422 |
| FauNDI | CATATG | 1 cut(s) | 759 |
| FokI | GGATG | 3 cut(s) | 145, 270, 1667 |
| FriOI | GRGCYC | 1 cut(s) | 1262 |
| FspBI | CTAG | 5 cut(s) | 242, 824, 1356, 1404, 1526 |
| GlaI | GCGC | 6 cut(s) | 303, 600, 822, 833, 893, 1214 |
| GsaI | CCCAGC | 2 cut(s) | 228, 395 |
| GsuI | CTGGAG | 1 cut(s) | 282 |
| HaeII | RGCGCY | 3 cut(s) | 305, 824, 835 |
| HaeIII | GGCC | 6 cut(s) | 281, 290, 405, 429, 1159, 1260 |
| HapII | CCGG | 3 cut(s) | 287, 426, 695 |
| HgaI | GACGC | 1 cut(s) | 762 |
| HhaI | GCGC | 6 cut(s) | 304, 601, 823, 834, 894, 1215 |
| Hin1I | GRCGYC | 1 cut(s) | 754 |
| Hin1II | CATG | 7 cut(s) | 36, 139, 731, 955, 1127, 1558, 1654 |
| Hin6I | GCGC | 6 cut(s) | 302, 599, 821, 832, 892, 1213 |
| HinP1I | GCGC | 6 cut(s) | 302, 599, 821, 832, 892, 1213 |
| HinfI | GANTC | 3 cut(s) | 176, 851, 874 |
| HpaII | CCGG | 3 cut(s) | 287, 426, 695 |
| HphI | GGTGA | 1 cut(s) | 1606 |
| Hpy166II | GTNNAC | 5 cut(s) | 145, 968, 1424, 1433, 1648 |
| Hpy188I | TCNGA | 4 cut(s) | 79, 114, 175, 931 |
| Hpy188III | TCNNGA | 4 cut(s) | 254, 745, 1078, 1138 |
| Hpy8I | GTNNAC | 5 cut(s) | 145, 968, 1424, 1433, 1648 |
| Hpy99I | CGWCG | 1 cut(s) | 756 |
| HpyAV | CCTTC | 3 cut(s) | 421, 1024, 1277 |
| HpyCH4III | ACNGT | 4 cut(s) | 110, 170, 948, 1052 |
| HpyCH4IV | ACGT | 5 cut(s) | 1252, 1312, 1330, 1420, 1429 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 287, 333, 443, 829, 1219, 1430, 1515 |
| HpyF3I | CTNAG | 7 cut(s) | 119, 252, 614, 773, 1116, 1139, 1230 |
| HpySE526I | ACGT | 5 cut(s) | 1252, 1312, 1330, 1420, 1429 |
| Hsp92I | GRCGYC | 1 cut(s) | 754 |
| Hsp92II | CATG | 7 cut(s) | 36, 139, 731, 955, 1127, 1558, 1654 |
| HspAI | GCGC | 6 cut(s) | 302, 599, 821, 832, 892, 1213 |
| KpnI | GGTACC | 1 cut(s) | 1228 |
| Kzo9I | GATC | 5 cut(s) | 465, 697, 792, 1074, 1481 |
| LguI | GCTCTTC | 2 cut(s) | 822, 942 |
| LmnI | GCTCC | 1 cut(s) | 1219 |
| Lsp1109I | GCAGC | 8 cut(s) | 3, 50, 323, 359, 374, 447, 449, 1516 |
| LweI | GCATC | 4 cut(s) | 167, 598, 738, 1645 |
| MabI | ACCWGGT | 1 cut(s) | 211 |
| MaeI | CTAG | 5 cut(s) | 242, 824, 1356, 1404, 1526 |
| MaeII | ACGT | 5 cut(s) | 1252, 1312, 1330, 1420, 1429 |
| MaeIII | GTNAC | 3 cut(s) | 244, 631, 976 |
| MalI | GATC | 5 cut(s) | 467, 699, 794, 1076, 1483 |
| MbiI | CCGCTC | 1 cut(s) | 1222 |
| MboI | GATC | 5 cut(s) | 465, 697, 792, 1074, 1481 |
| MfeI | CAATTG | 1 cut(s) | 1485 |
| MflI | RGATCY | 1 cut(s) | 697 |
| MhlI | GDGCHC | 4 cut(s) | 1262, 1426, 1435, 1650 |
| MluCI | AATT | 7 cut(s) | 925, 993, 1144, 1150, 1189, 1439, 1485 |
| MlyI | GAGTC | 1 cut(s) | 170 |
| MmeI | TCCRAC | 2 cut(s) | 70, 759 |
| MroXI | GAANNNNTTC | 1 cut(s) | 936 |
| MseI | TTAA | 1 cut(s) | 1442 |
| MslI | CAYNNNNRTG | 4 cut(s) | 140, 600, 1476, 1653 |
| MspA1I | CMGCKG | 1 cut(s) | 387 |
| MspI | CCGG | 3 cut(s) | 287, 426, 695 |
| MspR9I | CCNGG | 4 cut(s) | 213, 683, 695, 1280 |
| MunI | CAATTG | 1 cut(s) | 1485 |
| MvaI | CCWGG | 3 cut(s) | 213, 683, 1280 |
| MvnI | CGCG | 2 cut(s) | 599, 601 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 287, 333, 443, 829, 1219, 1430, 1515 |
| NciI | CCSGG | 1 cut(s) | 695 |
| NdeI | CATATG | 1 cut(s) | 759 |
| NdeII | GATC | 5 cut(s) | 465, 697, 792, 1074, 1481 |
| NlaIII | CATG | 7 cut(s) | 36, 139, 731, 955, 1127, 1558, 1654 |
| NlaIV | GGNNCC | 6 cut(s) | 204, 687, 1085, 1226, 1260, 1393 |
| NmeAIII | GCCGAG | 1 cut(s) | 381 |
| NmuCI | GTSAC | 2 cut(s) | 244, 976 |
| NspI | RCATGY | 2 cut(s) | 36, 731 |
| OliI | CACNNNNGTG | 1 cut(s) | 600 |
| PaeI | GCATGC | 1 cut(s) | 731 |
| PciI | ACATGT | 1 cut(s) | 32 |
| PciSI | GCTCTTC | 2 cut(s) | 822, 942 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1417, 1426 |
| PdmI | GAANNNNTTC | 1 cut(s) | 936 |
| PfeI | GAWTC | 2 cut(s) | 851, 874 |
| PleI | GAGTC | 1 cut(s) | 170 |
| PmaCI | CACGTG | 2 cut(s) | 1313, 1331 |
| PmlI | CACGTG | 2 cut(s) | 1313, 1331 |
| PpsI | GAGTC | 1 cut(s) | 170 |
| Ppu21I | YACGTR | 2 cut(s) | 1313, 1331 |
| PpuMI | RGGWCCY | 1 cut(s) | 686 |
| PscI | ACATGT | 1 cut(s) | 32 |
| PsiI | TTATAA | 2 cut(s) | 1149, 1194 |
| Psp5II | RGGWCCY | 1 cut(s) | 686 |
| Psp6I | CCWGG | 3 cut(s) | 211, 681, 1278 |
| PspCI | CACGTG | 2 cut(s) | 1313, 1331 |
| PspEI | GGTNACC | 1 cut(s) | 631 |
| PspFI | CCCAGC | 2 cut(s) | 224, 391 |
| PspGI | CCWGG | 3 cut(s) | 211, 681, 1278 |
| PspN4I | GGNNCC | 6 cut(s) | 204, 687, 1085, 1226, 1260, 1393 |
| PspOMI | GGGCCC | 1 cut(s) | 1258 |
| PspPI | GGNCC | 6 cut(s) | 280, 428, 686, 1158, 1258, 1259 |
| PspPPI | RGGWCCY | 1 cut(s) | 686 |
| PstI | CTGCAG | 2 cut(s) | 439, 465 |
| PsuI | RGATCY | 1 cut(s) | 697 |
| PvuII | CAGCTG | 1 cut(s) | 387 |
| RsaI | GTAC | 3 cut(s) | 146, 1054, 1226 |
| RsaNI | GTAC | 3 cut(s) | 145, 1053, 1225 |
| RseI | CAYNNNNRTG | 4 cut(s) | 140, 600, 1476, 1653 |
| SapI | GCTCTTC | 2 cut(s) | 822, 942 |
| SaqAI | TTAA | 1 cut(s) | 1442 |
| Sau3AI | GATC | 5 cut(s) | 465, 697, 792, 1074, 1481 |
| Sau96I | GGNCC | 6 cut(s) | 280, 428, 686, 1158, 1258, 1259 |
| SchI | GAGTC | 1 cut(s) | 170 |
| ScrFI | CCNGG | 4 cut(s) | 213, 683, 695, 1280 |
| SduI | GDGCHC | 4 cut(s) | 1262, 1426, 1435, 1650 |
| SexAI | ACCWGGT | 1 cut(s) | 211 |
| SfaNI | GCATC | 4 cut(s) | 167, 598, 738, 1645 |
| SfcI | CTRYAG | 4 cut(s) | 435, 461, 1110, 1537 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 287 |
| SinI | GGWCC | 1 cut(s) | 686 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 140, 600, 1476, 1653 |
| SmlI | CTYRAG | 1 cut(s) | 732 |
| SmoI | CTYRAG | 1 cut(s) | 732 |
| SphI | GCATGC | 1 cut(s) | 731 |
| Sse9I | AATT | 7 cut(s) | 925, 993, 1144, 1150, 1189, 1439, 1485 |
| SspI | AATATT | 2 cut(s) | 669, 1102 |
| SspMI | CTAG | 5 cut(s) | 242, 824, 1356, 1404, 1526 |
| StyD4I | CCNGG | 4 cut(s) | 211, 681, 693, 1278 |
| StyI | CCWWGG | 1 cut(s) | 1403 |
| TaaI | ACNGT | 4 cut(s) | 110, 170, 948, 1052 |
| TaiI | ACGT | 5 cut(s) | 1255, 1315, 1333, 1423, 1432 |
| TaqI | TCGA | 2 cut(s) | 791, 1474 |
| TasI | AATT | 7 cut(s) | 925, 993, 1144, 1150, 1189, 1439, 1485 |
| TatI | WGTACW | 1 cut(s) | 144 |
| TauI | GCSGC | 2 cut(s) | 327, 398 |
| TfiI | GAWTC | 2 cut(s) | 851, 874 |
| Tru1I | TTAA | 1 cut(s) | 1442 |
| Tru9I | TTAA | 1 cut(s) | 1442 |
| TscAI | CASTG | 2 cut(s) | 147, 338 |
| TseFI | GTSAC | 2 cut(s) | 244, 976 |
| TseI | GCWGC | 8 cut(s) | 16, 38, 336, 347, 387, 437, 460, 1529 |
| Tsp45I | GTSAC | 2 cut(s) | 244, 976 |
| TspDTI | ATGAA | 2 cut(s) | 1169, 1656 |
| TspGWI | ACGGA | 1 cut(s) | 1087 |
| TspRI | CASTG | 2 cut(s) | 147, 338 |
| VneI | GTGCAC | 3 cut(s) | 1422, 1431, 1646 |
| VpaK11BI | GGWCC | 1 cut(s) | 686 |
| XceI | RCATGY | 2 cut(s) | 36, 731 |
| XmaJI | CCTAGG | 1 cut(s) | 1403 |
| XmnI | GAANNNNTTC | 1 cut(s) | 936 |
| XspI | CTAG | 5 cut(s) | 242, 824, 1356, 1404, 1526 |