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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 882 |
| AccB1I | GGYRCC | 1 cut(s) | 995 |
| AccIII | TCCGGA | 1 cut(s) | 221 |
| AclWI | GGATC | 2 cut(s) | 135, 148 |
| AcoI | YGGCCR | 3 cut(s) | 3, 75, 95 |
| AcsI | RAATTY | 3 cut(s) | 186, 393, 719 |
| AcuI | CTGAAG | 3 cut(s) | 468, 518, 711 |
| AcyI | GRCGYC | 1 cut(s) | 996 |
| AfaI | GTAC | 1 cut(s) | 539 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 150, 165, 835, 861, 862 |
| AgsI | TTSAA | 3 cut(s) | 587, 667, 1033 |
| AjiI | CACGTC | 3 cut(s) | 231, 255, 427 |
| AjnI | CCWGG | 3 cut(s) | 38, 213, 420 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 579, 611 |
| AluBI | AGCT | 4 cut(s) | 452, 798, 1118, 1169 |
| AluI | AGCT | 4 cut(s) | 452, 798, 1118, 1169 |
| Alw21I | GWGCWC | 1 cut(s) | 1120 |
| Alw26I | GTCTC | 1 cut(s) | 583 |
| AlwI | GGATC | 2 cut(s) | 135, 148 |
| Ama87I | CYCGRG | 1 cut(s) | 410 |
| Aor13HI | TCCGGA | 1 cut(s) | 221 |
| AoxI | GGCC | 4 cut(s) | 3, 75, 95, 384 |
| ApeKI | GCWGC | 1 cut(s) | 470 |
| ApoI | RAATTY | 3 cut(s) | 186, 393, 719 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 696 |
| AspLEI | GCGC | 1 cut(s) | 998 |
| AspS9I | GGNCC | 4 cut(s) | 168, 242, 266, 884 |
| AsuHPI | GGTGA | 3 cut(s) | 148, 905, 1126 |
| AvaI | CYCGRG | 1 cut(s) | 410 |
| AvaII | GGWCC | 4 cut(s) | 168, 242, 266, 884 |
| BaeGI | GKGCMC | 1 cut(s) | 1105 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BamHI | GGATCC | 1 cut(s) | 140 |
| BanI | GGYRCC | 1 cut(s) | 995 |
| BanII | GRGCYC | 1 cut(s) | 1120 |
| BauI | CACGAG | 1 cut(s) | 1119 |
| BbsI | GAAGAC | 2 cut(s) | 564, 767 |
| Bbv12I | GWGCWC | 1 cut(s) | 1120 |
| BbvI | GCAGC | 1 cut(s) | 482 |
| BccI | CCATC | 4 cut(s) | 506, 633, 788, 1023 |
| BciT130I | CCWGG | 3 cut(s) | 40, 215, 422 |
| BciVI | GTATCC | 2 cut(s) | 394, 859 |
| BclI | TGATCA | 1 cut(s) | 1093 |
| BcoDI | GTCTC | 1 cut(s) | 583 |
| BfaI | CTAG | 1 cut(s) | 417 |
| BfoI | RGCGCY | 1 cut(s) | 999 |
| BfuI | GTATCC | 2 cut(s) | 394, 859 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 479 |
| BisI | GCNGC | 4 cut(s) | 15, 57, 204, 471 |
| BlsI | GCNGC | 4 cut(s) | 16, 58, 205, 472 |
| Bme1390I | CCNGG | 3 cut(s) | 40, 215, 422 |
| Bme18I | GGWCC | 4 cut(s) | 168, 242, 266, 884 |
| BmeT110I | CYCGRG | 1 cut(s) | 410 |
| BmgBI | CACGTC | 3 cut(s) | 231, 255, 427 |
| BmgT120I | GGNCC | 4 cut(s) | 168, 242, 266, 884 |
| BmiI | GGNNCC | 9 cut(s) | 63, 142, 226, 243, 244, 268, 841, 938, 997 |
| BmrFI | CCNGG | 3 cut(s) | 40, 215, 422 |
| BmsI | GCATC | 1 cut(s) | 385 |
| BpiI | GAAGAC | 2 cut(s) | 564, 767 |
| BpuEI | CTTGAG | 1 cut(s) | 365 |
| BsaHI | GRCGYC | 1 cut(s) | 996 |
| BsaI | GGTCTC | 1 cut(s) | 583 |
| BsaJI | CCNNGG | 3 cut(s) | 38, 213, 287 |
| BsaWI | WCCGGW | 1 cut(s) | 221 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 150, 165, 835, 861, 862 |
| Bse118I | RCCGGY | 3 cut(s) | 52, 73, 93 |
| Bse1I | ACTGG | 1 cut(s) | 340 |
| Bse3DI | GCAATG | 1 cut(s) | 753 |
| BseAI | TCCGGA | 1 cut(s) | 221 |
| BseBI | CCWGG | 3 cut(s) | 40, 215, 422 |
| BseDI | CCNNGG | 3 cut(s) | 38, 213, 287 |
| BseGI | GGATG | 3 cut(s) | 297, 501, 529 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 150, 165, 835, 861, 862 |
| BseMI | GCAATG | 1 cut(s) | 753 |
| BseMII | CTCAG | 1 cut(s) | 1047 |
| BseNI | ACTGG | 1 cut(s) | 340 |
| BseSI | GKGCMC | 1 cut(s) | 1105 |
| BseX3I | CGGCCG | 1 cut(s) | 75 |
| BseXI | GCAGC | 1 cut(s) | 482 |
| Bsh1285I | CGRYCG | 1 cut(s) | 78 |
| BshFI | GGCC | 4 cut(s) | 5, 77, 97, 386 |
| BshNI | GGYRCC | 1 cut(s) | 995 |
| BsiEI | CGRYCG | 1 cut(s) | 78 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1120 |
| BsiHKCI | CYCGRG | 1 cut(s) | 410 |
| BsiSI | CCGG | 5 cut(s) | 53, 74, 78, 94, 222 |
| BslFI | GGGAC | 1 cut(s) | 255 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 150, 165, 835, 861, 862 |
| BsmAI | GTCTC | 1 cut(s) | 583 |
| BsmFI | GGGAC | 1 cut(s) | 255 |
| BsnI | GGCC | 4 cut(s) | 5, 77, 97, 386 |
| Bso31I | GGTCTC | 1 cut(s) | 583 |
| BsoBI | CYCGRG | 1 cut(s) | 410 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1105, 1120 |
| Bsp13I | TCCGGA | 1 cut(s) | 221 |
| Bsp143I | GATC | 4 cut(s) | 140, 735, 1093, 1189 |
| BspANI | GGCC | 4 cut(s) | 5, 77, 97, 386 |
| BspCNI | CTCAG | 1 cut(s) | 1048 |
| BspEI | TCCGGA | 1 cut(s) | 221 |
| BspLI | GGNNCC | 9 cut(s) | 63, 142, 226, 243, 244, 268, 841, 938, 997 |
| BspPI | GGATC | 2 cut(s) | 135, 148 |
| BspT107I | GGYRCC | 1 cut(s) | 995 |
| BspTNI | GGTCTC | 1 cut(s) | 583 |
| BsrDI | GCAATG | 1 cut(s) | 753 |
| BsrFI | RCCGGY | 3 cut(s) | 52, 73, 93 |
| BsrI | ACTGG | 1 cut(s) | 340 |
| BssAI | RCCGGY | 3 cut(s) | 52, 73, 93 |
| BssECI | CCNNGG | 3 cut(s) | 38, 213, 287 |
| BssMI | GATC | 4 cut(s) | 140, 735, 1093, 1189 |
| BssNI | GRCGYC | 1 cut(s) | 996 |
| BssSI | CACGAG | 1 cut(s) | 1119 |
| Bst2BI | CACGAG | 1 cut(s) | 1119 |
| Bst2UI | CCWGG | 3 cut(s) | 40, 215, 422 |
| Bst4CI | ACNGT | 1 cut(s) | 436 |
| BstACI | GRCGYC | 1 cut(s) | 996 |
| BstDEI | CTNAG | 5 cut(s) | 123, 475, 830, 1008, 1056 |
| BstDSI | CCRYGG | 1 cut(s) | 287 |
| BstEII | GGTNACC | 1 cut(s) | 911 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 833 |
| BstF5I | GGATG | 3 cut(s) | 297, 501, 529 |
| BstH2I | RGCGCY | 1 cut(s) | 999 |
| BstHHI | GCGC | 1 cut(s) | 998 |
| BstKTI | GATC | 4 cut(s) | 143, 738, 1096, 1192 |
| BstMAI | GTCTC | 1 cut(s) | 583 |
| BstMBI | GATC | 4 cut(s) | 140, 735, 1093, 1189 |
| BstMCI | CGRYCG | 1 cut(s) | 78 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 11, 458, 467, 479, 1034, 1145, 1166 |
| BstNI | CCWGG | 3 cut(s) | 40, 215, 422 |
| BstPI | GGTNACC | 1 cut(s) | 911 |
| BstSCI | CCNGG | 3 cut(s) | 38, 213, 420 |
| BstSLI | GKGCMC | 1 cut(s) | 1105 |
| BstV1I | GCAGC | 1 cut(s) | 482 |
| BstV2I | GAAGAC | 2 cut(s) | 564, 767 |
| BstX2I | RGATCY | 1 cut(s) | 140 |
| BstYI | RGATCY | 1 cut(s) | 140 |
| BstZI | CGGCCG | 1 cut(s) | 75 |
| BsuI | GTATCC | 2 cut(s) | 394, 859 |
| BsuRI | GGCC | 4 cut(s) | 5, 77, 97, 386 |
| BtgI | CCRYGG | 1 cut(s) | 287 |
| BtrI | CACGTC | 3 cut(s) | 231, 255, 427 |
| BtsCI | GGATG | 3 cut(s) | 297, 501, 529 |
| BtsI | GCAGTG | 1 cut(s) | 271 |
| BtsIMutI | CAGTG | 1 cut(s) | 271 |
| CfoI | GCGC | 1 cut(s) | 998 |
| Cfr10I | RCCGGY | 3 cut(s) | 52, 73, 93 |
| Cfr13I | GGNCC | 4 cut(s) | 168, 242, 266, 884 |
| CseI | GACGC | 1 cut(s) | 1034 |
| Csp6I | GTAC | 1 cut(s) | 538 |
| CviAII | CATG | 1 cut(s) | 933 |
| CviQI | GTAC | 1 cut(s) | 538 |
| DdeI | CTNAG | 5 cut(s) | 123, 475, 830, 1008, 1056 |
| DinI | GGCGCC | 1 cut(s) | 997 |
| DpnI | GATC | 4 cut(s) | 142, 737, 1095, 1191 |
| DpnII | GATC | 4 cut(s) | 140, 735, 1093, 1189 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 882 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 882 |
| EaeI | YGGCCR | 3 cut(s) | 3, 75, 95 |
| EagI | CGGCCG | 1 cut(s) | 75 |
| EciI | GGCGGA | 3 cut(s) | 74, 183, 238 |
| Ecl136II | GAGCTC | 1 cut(s) | 1118 |
| EclXI | CGGCCG | 1 cut(s) | 75 |
| Eco24I | GRGCYC | 1 cut(s) | 1120 |
| Eco31I | GGTCTC | 1 cut(s) | 583 |
| Eco47I | GGWCC | 4 cut(s) | 168, 242, 266, 884 |
| Eco52I | CGGCCG | 1 cut(s) | 75 |
| Eco53kI | GAGCTC | 1 cut(s) | 1118 |
| Eco57I | CTGAAG | 3 cut(s) | 468, 518, 711 |
| Eco88I | CYCGRG | 1 cut(s) | 410 |
| Eco91I | GGTNACC | 1 cut(s) | 911 |
| EcoICRI | GAGCTC | 1 cut(s) | 1118 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 833 |
| EcoO109I | RGGNCCY | 1 cut(s) | 242 |
| EcoO65I | GGTNACC | 1 cut(s) | 911 |
| EcoRI | GAATTC | 2 cut(s) | 393, 719 |
| EcoRII | CCWGG | 3 cut(s) | 38, 213, 420 |
| EcoT38I | GRGCYC | 1 cut(s) | 1120 |
| EgeI | GGCGCC | 1 cut(s) | 997 |
| EheI | GGCGCC | 1 cut(s) | 997 |
| FaeI | CATG | 1 cut(s) | 936 |
| FaqI | GGGAC | 1 cut(s) | 255 |
| FatI | CATG | 1 cut(s) | 932 |
| FauNDI | CATATG | 1 cut(s) | 519 |
| FbaI | TGATCA | 1 cut(s) | 1093 |
| Fnu4HI | GCNGC | 4 cut(s) | 15, 57, 204, 471 |
| FokI | GGATG | 3 cut(s) | 304, 488, 536 |
| FriOI | GRGCYC | 1 cut(s) | 1120 |
| Fsp4HI | GCNGC | 4 cut(s) | 15, 57, 204, 471 |
| FspBI | CTAG | 1 cut(s) | 417 |
| GlaI | GCGC | 1 cut(s) | 997 |
| GluI | GCNGC | 4 cut(s) | 15, 57, 204, 471 |
| HaeII | RGCGCY | 1 cut(s) | 999 |
| HaeIII | GGCC | 4 cut(s) | 5, 77, 97, 386 |
| HapII | CCGG | 5 cut(s) | 53, 74, 78, 94, 222 |
| HgaI | GACGC | 1 cut(s) | 1034 |
| HhaI | GCGC | 1 cut(s) | 998 |
| Hin1I | GRCGYC | 1 cut(s) | 996 |
| Hin1II | CATG | 1 cut(s) | 936 |
| Hin6I | GCGC | 1 cut(s) | 996 |
| HinP1I | GCGC | 1 cut(s) | 996 |
| HincII | GTYRAC | 1 cut(s) | 950 |
| HindII | GTYRAC | 1 cut(s) | 950 |
| HindIII | AAGCTT | 1 cut(s) | 450 |
| HinfI | GANTC | 9 cut(s) | 43, 218, 406, 511, 527, 611, 763, 808, 1052 |
| HpaII | CCGG | 5 cut(s) | 53, 74, 78, 94, 222 |
| HphI | GGTGA | 3 cut(s) | 148, 905, 1126 |
| Hpy166II | GTNNAC | 3 cut(s) | 156, 287, 950 |
| Hpy188I | TCNGA | 7 cut(s) | 168, 175, 266, 343, 691, 1057, 1093 |
| Hpy8I | GTNNAC | 3 cut(s) | 156, 287, 950 |
| HpyAV | CCTTC | 2 cut(s) | 561, 902 |
| HpyCH4III | ACNGT | 1 cut(s) | 436 |
| HpyCH4IV | ACGT | 7 cut(s) | 230, 254, 279, 426, 603, 877, 952 |
| HpyCH4V | TGCA | 2 cut(s) | 746, 824 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 11, 458, 467, 479, 1034, 1145, 1166 |
| HpyF3I | CTNAG | 5 cut(s) | 123, 475, 830, 1008, 1056 |
| HpySE526I | ACGT | 7 cut(s) | 230, 254, 279, 426, 603, 877, 952 |
| Hsp92I | GRCGYC | 1 cut(s) | 996 |
| Hsp92II | CATG | 1 cut(s) | 936 |
| HspAI | GCGC | 1 cut(s) | 996 |
| KasI | GGCGCC | 1 cut(s) | 995 |
| KflI | GGGWCCC | 1 cut(s) | 242 |
| Kpn2I | TCCGGA | 1 cut(s) | 221 |
| Ksp22I | TGATCA | 1 cut(s) | 1093 |
| Kzo9I | GATC | 4 cut(s) | 140, 735, 1093, 1189 |
| LmnI | GCTCC | 2 cut(s) | 325, 839 |
| Lsp1109I | GCAGC | 1 cut(s) | 482 |
| LweI | GCATC | 1 cut(s) | 385 |
| MaeI | CTAG | 1 cut(s) | 417 |
| MaeII | ACGT | 7 cut(s) | 230, 254, 279, 426, 603, 877, 952 |
| MaeIII | GTNAC | 4 cut(s) | 296, 608, 911, 1132 |
| MalI | GATC | 4 cut(s) | 142, 737, 1095, 1191 |
| MboI | GATC | 4 cut(s) | 140, 735, 1093, 1189 |
| MboII | GAAGA | 8 cut(s) | 139, 566, 569, 599, 772, 1136, 1199, 1208 |
| MflI | RGATCY | 1 cut(s) | 140 |
| MhlI | GDGCHC | 2 cut(s) | 1105, 1120 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 6 cut(s) | 186, 308, 393, 719, 813, 858 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| Mly113I | GGCGCC | 1 cut(s) | 996 |
| MlyI | GAGTC | 4 cut(s) | 505, 605, 757, 1061 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroI | TCCGGA | 1 cut(s) | 221 |
| MroXI | GAANNNNTTC | 1 cut(s) | 696 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 3 cut(s) | 24, 705, 713 |
| MslI | CAYNNNNRTG | 4 cut(s) | 506, 522, 990, 1020 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 5 cut(s) | 53, 74, 78, 94, 222 |
| MspR9I | CCNGG | 3 cut(s) | 40, 215, 422 |
| MvaI | CCWGG | 3 cut(s) | 40, 215, 422 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 11, 458, 467, 479, 1034, 1145, 1166 |
| NarI | GGCGCC | 1 cut(s) | 996 |
| NdeI | CATATG | 1 cut(s) | 519 |
| NdeII | GATC | 4 cut(s) | 140, 735, 1093, 1189 |
| NlaIII | CATG | 1 cut(s) | 936 |
| NlaIV | GGNNCC | 9 cut(s) | 63, 142, 226, 243, 244, 268, 841, 938, 997 |
| NmuCI | GTSAC | 3 cut(s) | 608, 911, 1132 |
| PaeR7I | CTCGAG | 1 cut(s) | 410 |
| PdmI | GAANNNNTTC | 1 cut(s) | 696 |
| PfeI | GAWTC | 5 cut(s) | 43, 218, 406, 527, 808 |
| PkrI | GCNGC | 4 cut(s) | 16, 58, 205, 472 |
| PleI | GAGTC | 4 cut(s) | 505, 605, 757, 1060 |
| PluTI | GGCGCC | 1 cut(s) | 999 |
| PpsI | GAGTC | 4 cut(s) | 505, 605, 757, 1060 |
| PpuMI | RGGWCCY | 1 cut(s) | 242 |
| Psp124BI | GAGCTC | 1 cut(s) | 1120 |
| Psp5II | RGGWCCY | 1 cut(s) | 242 |
| Psp6I | CCWGG | 3 cut(s) | 38, 213, 420 |
| PspEI | GGTNACC | 1 cut(s) | 911 |
| PspGI | CCWGG | 3 cut(s) | 38, 213, 420 |
| PspN4I | GGNNCC | 9 cut(s) | 63, 142, 226, 243, 244, 268, 841, 938, 997 |
| PspPI | GGNCC | 4 cut(s) | 168, 242, 266, 884 |
| PspPPI | RGGWCCY | 1 cut(s) | 242 |
| PsuI | RGATCY | 1 cut(s) | 140 |
| RsaI | GTAC | 1 cut(s) | 539 |
| RsaNI | GTAC | 1 cut(s) | 538 |
| RseI | CAYNNNNRTG | 4 cut(s) | 506, 522, 990, 1020 |
| SacI | GAGCTC | 1 cut(s) | 1120 |
| SaqAI | TTAA | 3 cut(s) | 24, 705, 713 |
| SatI | GCNGC | 4 cut(s) | 15, 57, 204, 471 |
| Sau3AI | GATC | 4 cut(s) | 140, 735, 1093, 1189 |
| Sau96I | GGNCC | 4 cut(s) | 168, 242, 266, 884 |
| SchI | GAGTC | 4 cut(s) | 505, 605, 757, 1061 |
| ScrFI | CCNGG | 3 cut(s) | 40, 215, 422 |
| SduI | GDGCHC | 2 cut(s) | 1105, 1120 |
| SfaNI | GCATC | 1 cut(s) | 385 |
| SfoI | GGCGCC | 1 cut(s) | 997 |
| Sfr274I | CTCGAG | 1 cut(s) | 410 |
| SinI | GGWCC | 4 cut(s) | 168, 242, 266, 884 |
| SlaI | CTCGAG | 1 cut(s) | 410 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 506, 522, 990, 1020 |
| SmlI | CTYRAG | 2 cut(s) | 380, 410 |
| SmoI | CTYRAG | 2 cut(s) | 380, 410 |
| Sse9I | AATT | 6 cut(s) | 186, 308, 393, 719, 813, 858 |
| SspDI | GGCGCC | 1 cut(s) | 995 |
| SspMI | CTAG | 1 cut(s) | 417 |
| SstI | GAGCTC | 1 cut(s) | 1120 |
| StyD4I | CCNGG | 3 cut(s) | 38, 213, 420 |
| TaaI | ACNGT | 1 cut(s) | 436 |
| TaiI | ACGT | 7 cut(s) | 233, 257, 282, 429, 606, 880, 955 |
| TaqI | TCGA | 3 cut(s) | 110, 411, 1078 |
| TasI | AATT | 6 cut(s) | 186, 308, 393, 719, 813, 858 |
| TauI | GCSGC | 3 cut(s) | 17, 59, 206 |
| TfiI | GAWTC | 5 cut(s) | 43, 218, 406, 527, 808 |
| Tru1I | TTAA | 3 cut(s) | 24, 705, 713 |
| Tru9I | TTAA | 3 cut(s) | 24, 705, 713 |
| TscAI | CASTG | 1 cut(s) | 278 |
| TseFI | GTSAC | 3 cut(s) | 608, 911, 1132 |
| TseI | GCWGC | 1 cut(s) | 470 |
| Tsp45I | GTSAC | 3 cut(s) | 608, 911, 1132 |
| TspDTI | ATGAA | 2 cut(s) | 563, 567 |
| TspGWI | ACGGA | 2 cut(s) | 304, 596 |
| TspRI | CASTG | 1 cut(s) | 278 |
| VpaK11BI | GGWCC | 4 cut(s) | 168, 242, 266, 884 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 833 |
| XapI | RAATTY | 3 cut(s) | 186, 393, 719 |
| XhoI | CTCGAG | 1 cut(s) | 410 |
| XmnI | GAANNNNTTC | 1 cut(s) | 696 |
| XspI | CTAG | 1 cut(s) | 417 |