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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 842 |
| AccB1I | GGYRCC | 1 cut(s) | 734 |
| AciI | CCGC | 1 cut(s) | 361 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcyI | GRCGYC | 1 cut(s) | 735 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 683 |
| AgsI | TTSAA | 4 cut(s) | 376, 624, 770, 782 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 4 cut(s) | 155, 562, 572, 584 |
| AluI | AGCT | 4 cut(s) | 155, 562, 572, 584 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| AoxI | GGCC | 1 cut(s) | 791 |
| ApeKI | GCWGC | 2 cut(s) | 179, 749 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 2 cut(s) | 689, 737 |
| AsuHPI | GGTGA | 2 cut(s) | 740, 748 |
| BanI | GGYRCC | 1 cut(s) | 734 |
| BanII | GRGCYC | 1 cut(s) | 564 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BbvI | GCAGC | 2 cut(s) | 191, 736 |
| BccI | CCATC | 7 cut(s) | 92, 215, 342, 496, 497, 725, 729 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BfaI | CTAG | 3 cut(s) | 126, 338, 678 |
| BfoI | RGCGCY | 1 cut(s) | 738 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 2 cut(s) | 180, 750 |
| BlsI | GCNGC | 2 cut(s) | 181, 751 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 1 cut(s) | 736 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 2 cut(s) | 94, 736 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 1 cut(s) | 788 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 140 |
| BsaHI | GRCGYC | 1 cut(s) | 735 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 2 cut(s) | 630, 708 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 683 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseDI | CCNNGG | 2 cut(s) | 630, 708 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 683 |
| BseMII | CTCAG | 1 cut(s) | 802 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseXI | GCAGC | 2 cut(s) | 191, 736 |
| BshFI | GGCC | 1 cut(s) | 793 |
| BshNI | GGYRCC | 1 cut(s) | 734 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BslFI | GGGAC | 1 cut(s) | 677 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 683 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| BsmFI | GGGAC | 1 cut(s) | 677 |
| BsnI | GGCC | 1 cut(s) | 793 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| Bsp1286I | GDGCHC | 1 cut(s) | 564 |
| Bsp143I | GATC | 2 cut(s) | 334, 444 |
| Bsp19I | CCATGG | 1 cut(s) | 708 |
| BspACI | CCGC | 1 cut(s) | 361 |
| BspANI | GGCC | 1 cut(s) | 793 |
| BspCNI | CTCAG | 1 cut(s) | 801 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 1 cut(s) | 736 |
| BspT107I | GGYRCC | 1 cut(s) | 734 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssECI | CCNNGG | 2 cut(s) | 630, 708 |
| BssMI | GATC | 2 cut(s) | 334, 444 |
| BssNI | GRCGYC | 1 cut(s) | 735 |
| BssT1I | CCWWGG | 1 cut(s) | 708 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstACI | GRCGYC | 1 cut(s) | 735 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 4 cut(s) | 184, 510, 788, 855 |
| BstDSI | CCRYGG | 2 cut(s) | 630, 708 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstH2I | RGCGCY | 1 cut(s) | 738 |
| BstHHI | GCGC | 2 cut(s) | 689, 737 |
| BstKTI | GATC | 2 cut(s) | 337, 447 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMBI | GATC | 2 cut(s) | 334, 444 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 188, 197, 823 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 2 cut(s) | 191, 736 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 793 |
| BtgI | CCRYGG | 2 cut(s) | 630, 708 |
| BtgZI | GCGATG | 2 cut(s) | 111, 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 2 cut(s) | 689, 737 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 612, 647 |
| CviAII | CATG | 4 cut(s) | 557, 593, 709, 725 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 4 cut(s) | 184, 510, 788, 855 |
| DinI | GGCGCC | 1 cut(s) | 736 |
| DpnI | GATC | 2 cut(s) | 336, 446 |
| DpnII | GATC | 2 cut(s) | 334, 444 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco130I | CCWWGG | 1 cut(s) | 708 |
| Eco147I | AGGCCT | 1 cut(s) | 793 |
| Eco24I | GRGCYC | 1 cut(s) | 564 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 2 cut(s) | 76, 715 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 2 cut(s) | 76, 715 |
| EcoT14I | CCWWGG | 1 cut(s) | 708 |
| EcoT38I | GRGCYC | 1 cut(s) | 564 |
| EgeI | GGCGCC | 1 cut(s) | 736 |
| EheI | GGCGCC | 1 cut(s) | 736 |
| ErhI | CCWWGG | 1 cut(s) | 708 |
| FaeI | CATG | 4 cut(s) | 560, 596, 712, 728 |
| FaqI | GGGAC | 1 cut(s) | 677 |
| FatI | CATG | 4 cut(s) | 556, 592, 708, 724 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 2 cut(s) | 180, 750 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| FriOI | GRGCYC | 1 cut(s) | 564 |
| Fsp4HI | GCNGC | 2 cut(s) | 180, 750 |
| FspBI | CTAG | 3 cut(s) | 126, 338, 678 |
| GlaI | GCGC | 2 cut(s) | 688, 736 |
| GluI | GCNGC | 2 cut(s) | 180, 750 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 1 cut(s) | 738 |
| HaeIII | GGCC | 1 cut(s) | 793 |
| HhaI | GCGC | 2 cut(s) | 689, 737 |
| Hin1I | GRCGYC | 1 cut(s) | 735 |
| Hin1II | CATG | 4 cut(s) | 560, 596, 712, 728 |
| Hin6I | GCGC | 2 cut(s) | 687, 735 |
| HinP1I | GCGC | 2 cut(s) | 687, 735 |
| HinfI | GANTC | 7 cut(s) | 102, 220, 236, 320, 522, 543, 653 |
| HphI | GGTGA | 2 cut(s) | 740, 748 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 400 |
| Hpy188III | TCNNGA | 7 cut(s) | 71, 119, 332, 338, 386, 557, 650 |
| HpyAV | CCTTC | 1 cut(s) | 270 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 312 |
| HpyCH4V | TGCA | 3 cut(s) | 497, 536, 752 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 188, 197, 823 |
| HpyF3I | CTNAG | 4 cut(s) | 184, 510, 788, 855 |
| HpySE526I | ACGT | 2 cut(s) | 135, 312 |
| Hsp92I | GRCGYC | 1 cut(s) | 735 |
| Hsp92II | CATG | 4 cut(s) | 560, 596, 712, 728 |
| HspAI | GCGC | 2 cut(s) | 687, 735 |
| KasI | GGCGCC | 1 cut(s) | 734 |
| Kzo9I | GATC | 2 cut(s) | 334, 444 |
| LmnI | GCTCC | 1 cut(s) | 569 |
| Lsp1109I | GCAGC | 2 cut(s) | 191, 736 |
| LweI | GCATC | 2 cut(s) | 94, 736 |
| MaeI | CTAG | 3 cut(s) | 126, 338, 678 |
| MaeII | ACGT | 2 cut(s) | 135, 312 |
| MaeIII | GTNAC | 3 cut(s) | 5, 317, 529 |
| MalI | GATC | 2 cut(s) | 336, 446 |
| MboI | GATC | 2 cut(s) | 334, 444 |
| MboII | GAAGA | 3 cut(s) | 275, 278, 622 |
| MhlI | GDGCHC | 1 cut(s) | 564 |
| MluCI | AATT | 6 cut(s) | 17, 114, 370, 428, 619, 658 |
| Mly113I | GGCGCC | 1 cut(s) | 735 |
| MlyI | GAGTC | 2 cut(s) | 214, 314 |
| MnlI | CCTC | 3 cut(s) | 181, 368, 837 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 4 cut(s) | 147, 294, 414, 422 |
| MslI | CAYNNNNRTG | 4 cut(s) | 215, 231, 726, 729 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 188, 197, 823 |
| NarI | GGCGCC | 1 cut(s) | 735 |
| NcoI | CCATGG | 1 cut(s) | 708 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 2 cut(s) | 334, 444 |
| NlaIII | CATG | 4 cut(s) | 560, 596, 712, 728 |
| NlaIV | GGNNCC | 1 cut(s) | 736 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PceI | AGGCCT | 1 cut(s) | 793 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 76 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 5 cut(s) | 102, 236, 522, 543, 653 |
| PkrI | GCNGC | 2 cut(s) | 181, 751 |
| PleI | GAGTC | 2 cut(s) | 214, 314 |
| PluTI | GGCGCC | 1 cut(s) | 738 |
| PpsI | GAGTC | 2 cut(s) | 214, 314 |
| PsiI | TTATAA | 1 cut(s) | 842 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 1 cut(s) | 736 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 4 cut(s) | 215, 231, 726, 729 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 4 cut(s) | 147, 294, 414, 422 |
| SatI | GCNGC | 2 cut(s) | 180, 750 |
| Sau3AI | GATC | 2 cut(s) | 334, 444 |
| SchI | GAGTC | 2 cut(s) | 214, 314 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 564 |
| SetI | ASST | 9 cut(s) | 12, 65, 138, 157, 315, 564, 574, 586, 745 |
| SfaNI | GCATC | 2 cut(s) | 94, 736 |
| SfoI | GGCGCC | 1 cut(s) | 736 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 215, 231, 726, 729 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| Sse9I | AATT | 6 cut(s) | 17, 114, 370, 428, 619, 658 |
| SseBI | AGGCCT | 1 cut(s) | 793 |
| SsiI | CCGC | 1 cut(s) | 361 |
| SspDI | GGCGCC | 1 cut(s) | 734 |
| SspMI | CTAG | 3 cut(s) | 126, 338, 678 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| StuI | AGGCCT | 1 cut(s) | 793 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| StyI | CCWWGG | 1 cut(s) | 708 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 138, 315 |
| TaqI | TCGA | 1 cut(s) | 520 |
| TasI | AATT | 6 cut(s) | 17, 114, 370, 428, 619, 658 |
| TatI | WGTACW | 1 cut(s) | 246 |
| TfiI | GAWTC | 5 cut(s) | 102, 236, 522, 543, 653 |
| Tru1I | TTAA | 4 cut(s) | 147, 294, 414, 422 |
| Tru9I | TTAA | 4 cut(s) | 147, 294, 414, 422 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 2 cut(s) | 179, 749 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 4 cut(s) | 272, 276, 545, 590 |
| TspGWI | ACGGA | 3 cut(s) | 68, 305, 619 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XbaI | TCTAGA | 1 cut(s) | 337 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 680, 728 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 3 cut(s) | 126, 338, 678 |