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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 198, 243 |
| AccB1I | GGYRCC | 1 cut(s) | 359 |
| AccBSI | CCGCTC | 1 cut(s) | 271 |
| AciI | CCGC | 1 cut(s) | 271 |
| AclWI | GGATC | 1 cut(s) | 478 |
| AcuI | CTGAAG | 1 cut(s) | 648 |
| AcyI | GRCGYC | 1 cut(s) | 360 |
| AdeI | CACNNNGTG | 2 cut(s) | 410, 419 |
| AfaI | GTAC | 1 cut(s) | 103 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 257, 258, 329, 610 |
| AgsI | TTSAA | 5 cut(s) | 204, 433, 490, 522, 622 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 23 |
| AluBI | AGCT | 6 cut(s) | 40, 142, 164, 347, 518, 626 |
| AluI | AGCT | 6 cut(s) | 40, 142, 164, 347, 518, 626 |
| Alw21I | GWGCWC | 3 cut(s) | 415, 424, 642 |
| Alw26I | GTCTC | 1 cut(s) | 588 |
| Alw44I | GTGCAC | 3 cut(s) | 411, 420, 638 |
| AlwI | GGATC | 1 cut(s) | 478 |
| AoxI | GGCC | 1 cut(s) | 206 |
| ApaLI | GTGCAC | 3 cut(s) | 411, 420, 638 |
| ApeKI | GCWGC | 1 cut(s) | 650 |
| AspA2I | CCTAGG | 2 cut(s) | 278, 392 |
| AspLEI | GCGC | 2 cut(s) | 264, 362 |
| AspS9I | GGNCC | 2 cut(s) | 207, 541 |
| AsuHPI | GGTGA | 1 cut(s) | 598 |
| AvaII | GGWCC | 1 cut(s) | 541 |
| AvrII | CCTAGG | 2 cut(s) | 278, 392 |
| AxyI | CCTNAGG | 1 cut(s) | 545 |
| BaeGI | GKGCMC | 3 cut(s) | 415, 424, 642 |
| BanI | GGYRCC | 1 cut(s) | 359 |
| BauI | CACGAG | 3 cut(s) | 127, 185, 348 |
| BbsI | GAAGAC | 1 cut(s) | 56 |
| Bbv12I | GWGCWC | 3 cut(s) | 415, 424, 642 |
| BbvI | GCAGC | 1 cut(s) | 637 |
| BclI | TGATCA | 1 cut(s) | 123 |
| BcoDI | GTCTC | 1 cut(s) | 588 |
| BfaI | CTAG | 4 cut(s) | 279, 393, 474, 515 |
| BfmI | CTRYAG | 1 cut(s) | 159 |
| BfoI | RGCGCY | 1 cut(s) | 363 |
| BisI | GCNGC | 1 cut(s) | 651 |
| BlnI | CCTAGG | 2 cut(s) | 278, 392 |
| BlsI | GCNGC | 1 cut(s) | 652 |
| Bme18I | GGWCC | 1 cut(s) | 541 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 23 |
| BmgT120I | GGNCC | 2 cut(s) | 207, 541 |
| BmiI | GGNNCC | 4 cut(s) | 275, 340, 361, 542 |
| BmsI | GCATC | 1 cut(s) | 637 |
| BpiI | GAAGAC | 1 cut(s) | 56 |
| Bsa29I | ATCGAT | 1 cut(s) | 463 |
| BsaBI | GATNNNNATC | 1 cut(s) | 469 |
| BsaHI | GRCGYC | 1 cut(s) | 360 |
| BsaJI | CCNNGG | 5 cut(s) | 278, 328, 363, 392, 609 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 373, 403 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 257, 258, 329, 610 |
| Bse21I | CCTNAGG | 1 cut(s) | 545 |
| Bse3DI | GCAATG | 1 cut(s) | 500 |
| Bse8I | GATNNNNATC | 1 cut(s) | 469 |
| BseCI | ATCGAT | 1 cut(s) | 463 |
| BseDI | CCNNGG | 5 cut(s) | 278, 328, 363, 392, 609 |
| BseGI | GGATG | 1 cut(s) | 652 |
| BseJI | GATNNNNATC | 1 cut(s) | 469 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 257, 258, 329, 610 |
| BseMI | GCAATG | 1 cut(s) | 500 |
| BseMII | CTCAG | 2 cut(s) | 156, 536 |
| BseSI | GKGCMC | 3 cut(s) | 415, 424, 642 |
| BseXI | GCAGC | 1 cut(s) | 637 |
| BshFI | GGCC | 1 cut(s) | 208 |
| BshNI | GGYRCC | 1 cut(s) | 359 |
| BshVI | ATCGAT | 1 cut(s) | 463 |
| BsiHKAI | GWGCWC | 3 cut(s) | 415, 424, 642 |
| BslFI | GGGAC | 3 cut(s) | 303, 312, 554 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 257, 258, 329, 610 |
| BsmAI | GTCTC | 1 cut(s) | 588 |
| BsmBI | CGTCTC | 1 cut(s) | 588 |
| BsmFI | GGGAC | 3 cut(s) | 303, 312, 554 |
| BsnI | GGCC | 1 cut(s) | 208 |
| Bsp1286I | GDGCHC | 3 cut(s) | 415, 424, 642 |
| Bsp143I | GATC | 2 cut(s) | 123, 470 |
| Bsp19I | CCATGG | 2 cut(s) | 363, 609 |
| BspACI | CCGC | 1 cut(s) | 271 |
| BspANI | GGCC | 1 cut(s) | 208 |
| BspCNI | CTCAG | 2 cut(s) | 157, 537 |
| BspDI | ATCGAT | 1 cut(s) | 463 |
| BspHI | TCATGA | 1 cut(s) | 229 |
| BspLI | GGNNCC | 4 cut(s) | 275, 340, 361, 542 |
| BspPI | GGATC | 1 cut(s) | 478 |
| BspT107I | GGYRCC | 1 cut(s) | 359 |
| BsrBI | CCGCTC | 1 cut(s) | 271 |
| BsrDI | GCAATG | 1 cut(s) | 500 |
| BssECI | CCNNGG | 5 cut(s) | 278, 328, 363, 392, 609 |
| BssMI | GATC | 2 cut(s) | 123, 470 |
| BssNI | GRCGYC | 1 cut(s) | 360 |
| BssSI | CACGAG | 3 cut(s) | 127, 185, 348 |
| BssT1I | CCWWGG | 4 cut(s) | 278, 363, 392, 609 |
| Bst2BI | CACGAG | 3 cut(s) | 127, 185, 348 |
| Bst4CI | ACNGT | 1 cut(s) | 101 |
| BstACI | GRCGYC | 1 cut(s) | 360 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 419 |
| BstC8I | GCNNGC | 2 cut(s) | 505, 509 |
| BstDEI | CTNAG | 3 cut(s) | 165, 219, 545 |
| BstDSI | CCRYGG | 3 cut(s) | 328, 363, 609 |
| BstF5I | GGATG | 1 cut(s) | 652 |
| BstH2I | RGCGCY | 1 cut(s) | 363 |
| BstHHI | GCGC | 2 cut(s) | 264, 362 |
| BstKTI | GATC | 2 cut(s) | 126, 473 |
| BstMAI | GTCTC | 1 cut(s) | 588 |
| BstMBI | GATC | 2 cut(s) | 123, 470 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 268, 419, 504 |
| BstSFI | CTRYAG | 1 cut(s) | 159 |
| BstSLI | GKGCMC | 3 cut(s) | 415, 424, 642 |
| BstV1I | GCAGC | 1 cut(s) | 637 |
| BstV2I | GAAGAC | 1 cut(s) | 56 |
| BstX2I | RGATCY | 1 cut(s) | 470 |
| BstYI | RGATCY | 1 cut(s) | 470 |
| Bsu15I | ATCGAT | 1 cut(s) | 463 |
| Bsu36I | CCTNAGG | 1 cut(s) | 545 |
| BsuRI | GGCC | 1 cut(s) | 208 |
| BsuTUI | ATCGAT | 1 cut(s) | 463 |
| BtgI | CCRYGG | 3 cut(s) | 328, 363, 609 |
| BtsCI | GGATG | 1 cut(s) | 652 |
| Cac8I | GCNNGC | 2 cut(s) | 505, 509 |
| CciI | TCATGA | 1 cut(s) | 229 |
| CfoI | GCGC | 2 cut(s) | 264, 362 |
| Cfr13I | GGNCC | 2 cut(s) | 207, 541 |
| ClaI | ATCGAT | 1 cut(s) | 463 |
| Csp6I | GTAC | 1 cut(s) | 102 |
| CviAII | CATG | 5 cut(s) | 173, 230, 293, 364, 610 |
| CviJI | RGCY | 9 cut(s) | 40, 77, 142, 164, 208, 341, 347, 518, 626 |
| CviKI_1 | RGCY | 9 cut(s) | 40, 77, 142, 164, 208, 341, 347, 518, 626 |
| CviQI | GTAC | 1 cut(s) | 102 |
| DdeI | CTNAG | 3 cut(s) | 165, 219, 545 |
| DinI | GGCGCC | 1 cut(s) | 361 |
| DpnI | GATC | 2 cut(s) | 125, 472 |
| DpnII | GATC | 2 cut(s) | 123, 470 |
| DraIII | CACNNNGTG | 2 cut(s) | 410, 419 |
| DriI | GACNNNNNGTC | 1 cut(s) | 23 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 4 cut(s) | 278, 363, 392, 609 |
| Eco47I | GGWCC | 1 cut(s) | 541 |
| Eco57I | CTGAAG | 1 cut(s) | 648 |
| Eco81I | CCTNAGG | 1 cut(s) | 545 |
| EcoO109I | RGGNCCY | 1 cut(s) | 541 |
| EcoT14I | CCWWGG | 4 cut(s) | 278, 363, 392, 609 |
| EgeI | GGCGCC | 1 cut(s) | 361 |
| EheI | GGCGCC | 1 cut(s) | 361 |
| ErhI | CCWWGG | 4 cut(s) | 278, 363, 392, 609 |
| Esp3I | CGTCTC | 1 cut(s) | 588 |
| FaeI | CATG | 5 cut(s) | 176, 233, 296, 367, 613 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 549, 581 |
| FaqI | GGGAC | 3 cut(s) | 303, 312, 554 |
| FatI | CATG | 5 cut(s) | 172, 229, 292, 363, 609 |
| FbaI | TGATCA | 1 cut(s) | 123 |
| Fnu4HI | GCNGC | 1 cut(s) | 651 |
| FokI | GGATG | 1 cut(s) | 659 |
| Fsp4HI | GCNGC | 1 cut(s) | 651 |
| FspBI | CTAG | 4 cut(s) | 279, 393, 474, 515 |
| GlaI | GCGC | 2 cut(s) | 263, 361 |
| GluI | GCNGC | 1 cut(s) | 651 |
| HaeII | RGCGCY | 1 cut(s) | 363 |
| HaeIII | GGCC | 1 cut(s) | 208 |
| HhaI | GCGC | 2 cut(s) | 264, 362 |
| Hin1I | GRCGYC | 1 cut(s) | 360 |
| Hin1II | CATG | 5 cut(s) | 176, 233, 296, 367, 613 |
| Hin6I | GCGC | 2 cut(s) | 262, 360 |
| HinP1I | GCGC | 2 cut(s) | 262, 360 |
| HincII | GTYRAC | 1 cut(s) | 601 |
| HindII | GTYRAC | 1 cut(s) | 601 |
| HinfI | GANTC | 2 cut(s) | 9, 52 |
| HpaI | GTTAAC | 1 cut(s) | 601 |
| HphI | GGTGA | 1 cut(s) | 598 |
| Hpy166II | GTNNAC | 6 cut(s) | 17, 413, 422, 562, 601, 640 |
| Hpy188III | TCNNGA | 4 cut(s) | 127, 187, 230, 522 |
| Hpy8I | GTNNAC | 6 cut(s) | 17, 413, 422, 562, 601, 640 |
| HpyAV | CCTTC | 2 cut(s) | 73, 427 |
| HpyCH4III | ACNGT | 1 cut(s) | 101 |
| HpyCH4IV | ACGT | 3 cut(s) | 301, 418, 597 |
| HpyCH4V | TGCA | 7 cut(s) | 248, 413, 422, 498, 569, 640, 653 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 268, 419, 504 |
| HpyF3I | CTNAG | 3 cut(s) | 165, 219, 545 |
| HpySE526I | ACGT | 3 cut(s) | 301, 418, 597 |
| Hsp92I | GRCGYC | 1 cut(s) | 360 |
| Hsp92II | CATG | 5 cut(s) | 176, 233, 296, 367, 613 |
| HspAI | GCGC | 2 cut(s) | 262, 360 |
| KasI | GGCGCC | 1 cut(s) | 359 |
| Ksp22I | TGATCA | 1 cut(s) | 123 |
| KspAI | GTTAAC | 1 cut(s) | 601 |
| Kzo9I | GATC | 2 cut(s) | 123, 470 |
| LmnI | GCTCC | 3 cut(s) | 268, 338, 550 |
| LpnPI | CCDG | 5 cut(s) | 36, 102, 514, 523, 557 |
| Lsp1109I | GCAGC | 1 cut(s) | 637 |
| LweI | GCATC | 1 cut(s) | 637 |
| MaeI | CTAG | 4 cut(s) | 279, 393, 474, 515 |
| MaeII | ACGT | 3 cut(s) | 301, 418, 597 |
| MaeIII | GTNAC | 1 cut(s) | 25 |
| MalI | GATC | 2 cut(s) | 125, 472 |
| MbiI | CCGCTC | 1 cut(s) | 271 |
| MboI | GATC | 2 cut(s) | 123, 470 |
| MboII | GAAGA | 6 cut(s) | 61, 584, 587, 590, 593, 641 |
| MfeI | CAATTG | 1 cut(s) | 428 |
| MflI | RGATCY | 1 cut(s) | 470 |
| MhlI | GDGCHC | 3 cut(s) | 415, 424, 642 |
| MluCI | AATT | 5 cut(s) | 42, 193, 199, 238, 428 |
| Mly113I | GGCGCC | 1 cut(s) | 360 |
| MlyI | GAGTC | 1 cut(s) | 46 |
| MseI | TTAA | 1 cut(s) | 600 |
| MslI | CAYNNNNRTG | 3 cut(s) | 185, 465, 645 |
| MunI | CAATTG | 1 cut(s) | 428 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 268, 419, 504 |
| NarI | GGCGCC | 1 cut(s) | 360 |
| NcoI | CCATGG | 2 cut(s) | 363, 609 |
| NdeII | GATC | 2 cut(s) | 123, 470 |
| NlaIII | CATG | 5 cut(s) | 176, 233, 296, 367, 613 |
| NlaIV | GGNNCC | 4 cut(s) | 275, 340, 361, 542 |
| NmuCI | GTSAC | 1 cut(s) | 25 |
| PagI | TCATGA | 1 cut(s) | 229 |
| PfeI | GAWTC | 1 cut(s) | 9 |
| PkrI | GCNGC | 1 cut(s) | 652 |
| PleI | GAGTC | 1 cut(s) | 46 |
| PluTI | GGCGCC | 1 cut(s) | 363 |
| PpsI | GAGTC | 1 cut(s) | 46 |
| PpuMI | RGGWCCY | 1 cut(s) | 541 |
| PsiI | TTATAA | 2 cut(s) | 198, 243 |
| Psp5II | RGGWCCY | 1 cut(s) | 541 |
| PspN4I | GGNNCC | 4 cut(s) | 275, 340, 361, 542 |
| PspPI | GGNCC | 2 cut(s) | 207, 541 |
| PspPPI | RGGWCCY | 1 cut(s) | 541 |
| PsuI | RGATCY | 1 cut(s) | 470 |
| RsaI | GTAC | 1 cut(s) | 103 |
| RsaNI | GTAC | 1 cut(s) | 102 |
| RseI | CAYNNNNRTG | 3 cut(s) | 185, 465, 645 |
| SaqAI | TTAA | 1 cut(s) | 600 |
| SatI | GCNGC | 1 cut(s) | 651 |
| Sau3AI | GATC | 2 cut(s) | 123, 470 |
| Sau96I | GGNCC | 2 cut(s) | 207, 541 |
| SchI | GAGTC | 1 cut(s) | 46 |
| SduI | GDGCHC | 3 cut(s) | 415, 424, 642 |
| SfaNI | GCATC | 1 cut(s) | 637 |
| SfcI | CTRYAG | 1 cut(s) | 159 |
| SfoI | GGCGCC | 1 cut(s) | 361 |
| SinI | GGWCC | 1 cut(s) | 541 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 185, 465, 645 |
| Sse9I | AATT | 5 cut(s) | 42, 193, 199, 238, 428 |
| SsiI | CCGC | 1 cut(s) | 271 |
| SspDI | GGCGCC | 1 cut(s) | 359 |
| SspMI | CTAG | 4 cut(s) | 279, 393, 474, 515 |
| StyI | CCWWGG | 4 cut(s) | 278, 363, 392, 609 |
| TaaI | ACNGT | 1 cut(s) | 101 |
| TaiI | ACGT | 3 cut(s) | 304, 421, 600 |
| TaqI | TCGA | 1 cut(s) | 463 |
| TasI | AATT | 5 cut(s) | 42, 193, 199, 238, 428 |
| TatI | WGTACW | 1 cut(s) | 101 |
| TfiI | GAWTC | 1 cut(s) | 9 |
| Tru1I | TTAA | 1 cut(s) | 600 |
| Tru9I | TTAA | 1 cut(s) | 600 |
| TseFI | GTSAC | 1 cut(s) | 25 |
| TseI | GCWGC | 1 cut(s) | 650 |
| Tsp45I | GTSAC | 1 cut(s) | 25 |
| TspDTI | ATGAA | 3 cut(s) | 125, 218, 648 |
| TspGWI | ACGGA | 1 cut(s) | 317 |
| VneI | GTGCAC | 3 cut(s) | 411, 420, 638 |
| VpaK11BI | GGWCC | 1 cut(s) | 541 |
| XmaJI | CCTAGG | 2 cut(s) | 278, 392 |
| XspI | CTAG | 4 cut(s) | 279, 393, 474, 515 |