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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 684, 824 |
| AccI | GTMKAC | 1 cut(s) | 713 |
| AccIII | TCCGGA | 1 cut(s) | 649 |
| AciI | CCGC | 4 cut(s) | 79, 361, 763, 966 |
| AclWI | GGATC | 2 cut(s) | 551, 725 |
| AcoI | YGGCCR | 1 cut(s) | 811 |
| AcyI | GRCGYC | 2 cut(s) | 685, 825 |
| AdeI | CACNNNGTG | 1 cut(s) | 1006 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 793 |
| AgsI | TTSAA | 2 cut(s) | 376, 862 |
| AhlI | ACTAGT | 1 cut(s) | 221 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 6 cut(s) | 48, 155, 562, 572, 947, 998 |
| AluI | AGCT | 6 cut(s) | 48, 155, 562, 572, 947, 998 |
| Alw21I | GWGCWC | 2 cut(s) | 564, 949 |
| Alw26I | GTCTC | 2 cut(s) | 292, 496 |
| AlwI | GGATC | 2 cut(s) | 551, 725 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 649 |
| AoxI | GGCC | 2 cut(s) | 93, 811 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 164, 196 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 3 cut(s) | 687, 827, 868 |
| AsuHPI | GGTGA | 2 cut(s) | 211, 955 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BaeGI | GKGCMC | 1 cut(s) | 934 |
| BalI | TGGCCA | 1 cut(s) | 813 |
| BanI | GGYRCC | 2 cut(s) | 684, 824 |
| BanII | GRGCYC | 2 cut(s) | 564, 949 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 2 cut(s) | 564, 949 |
| BccI | CCATC | 5 cut(s) | 92, 215, 342, 496, 852 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 515, 549 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BclI | TGATCA | 2 cut(s) | 922, 1018 |
| BcoDI | GTCTC | 2 cut(s) | 292, 496 |
| BcuI | ACTAGT | 1 cut(s) | 221 |
| BfaI | CTAG | 4 cut(s) | 45, 126, 222, 338 |
| BfoI | RGCGCY | 3 cut(s) | 688, 828, 869 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglII | AGATCT | 1 cut(s) | 626 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 3 cut(s) | 686, 785, 826 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 442 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| Bpu10I | CCTNAGC | 1 cut(s) | 156 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaHI | GRCGYC | 2 cut(s) | 685, 825 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaWI | WCCGGW | 1 cut(s) | 649 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 793 |
| Bse1I | ACTGG | 1 cut(s) | 82 |
| Bse3DI | GCAATG | 1 cut(s) | 316 |
| BseAI | TCCGGA | 1 cut(s) | 649 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 793 |
| BseMI | GCAATG | 1 cut(s) | 316 |
| BseMII | CTCAG | 1 cut(s) | 170 |
| BseNI | ACTGG | 1 cut(s) | 82 |
| BseSI | GKGCMC | 1 cut(s) | 934 |
| BshFI | GGCC | 2 cut(s) | 95, 813 |
| BshNI | GGYRCC | 2 cut(s) | 684, 824 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 2 cut(s) | 564, 949 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 650 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 793 |
| BsmAI | GTCTC | 2 cut(s) | 292, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsnI | GGCC | 2 cut(s) | 95, 813 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 3 cut(s) | 564, 934, 949 |
| Bsp13I | TCCGGA | 1 cut(s) | 649 |
| Bsp143I | GATC | 7 cut(s) | 444, 543, 626, 730, 922, 1018, 1030 |
| BspACI | CCGC | 4 cut(s) | 79, 361, 763, 966 |
| BspANI | GGCC | 2 cut(s) | 95, 813 |
| BspCNI | CTCAG | 1 cut(s) | 169 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspEI | TCCGGA | 1 cut(s) | 649 |
| BspHI | TCATGA | 2 cut(s) | 556, 949 |
| BspLI | GGNNCC | 3 cut(s) | 686, 785, 826 |
| BspPI | GGATC | 2 cut(s) | 551, 725 |
| BspT107I | GGYRCC | 2 cut(s) | 684, 824 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrDI | GCAATG | 1 cut(s) | 316 |
| BsrI | ACTGG | 1 cut(s) | 82 |
| BssMI | GATC | 7 cut(s) | 444, 543, 626, 730, 922, 1018, 1030 |
| BssNAI | GTATAC | 1 cut(s) | 714 |
| BssNI | GRCGYC | 2 cut(s) | 685, 825 |
| Bst1107I | GTATAC | 1 cut(s) | 714 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 784 |
| BstACI | GRCGYC | 2 cut(s) | 685, 825 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 6 cut(s) | 156, 184, 510, 675, 707, 837 |
| BstEII | GGTNACC | 1 cut(s) | 758 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstH2I | RGCGCY | 3 cut(s) | 688, 828, 869 |
| BstHHI | GCGC | 3 cut(s) | 687, 827, 868 |
| BstKTI | GATC | 7 cut(s) | 447, 546, 629, 733, 925, 1021, 1033 |
| BstMAI | GTCTC | 2 cut(s) | 292, 496 |
| BstMBI | GATC | 7 cut(s) | 444, 543, 626, 730, 922, 1018, 1030 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 691, 863, 974, 995 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstPI | GGTNACC | 1 cut(s) | 758 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSLI | GKGCMC | 1 cut(s) | 934 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 821 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| BstZ17I | GTATAC | 1 cut(s) | 714 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 2 cut(s) | 95, 813 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 2 cut(s) | 556, 949 |
| CfoI | GCGC | 3 cut(s) | 687, 827, 868 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| CseI | GACGC | 1 cut(s) | 863 |
| CviAII | CATG | 4 cut(s) | 557, 593, 815, 950 |
| DdeI | CTNAG | 6 cut(s) | 156, 184, 510, 675, 707, 837 |
| DinI | GGCGCC | 2 cut(s) | 686, 826 |
| DpnI | GATC | 7 cut(s) | 446, 545, 628, 732, 924, 1020, 1032 |
| DpnII | GATC | 7 cut(s) | 444, 543, 626, 730, 922, 1018, 1030 |
| DraIII | CACNNNGTG | 1 cut(s) | 1006 |
| EaeI | YGGCCR | 1 cut(s) | 811 |
| Eam1104I | CTCTTC | 1 cut(s) | 784 |
| EarI | CTCTTC | 1 cut(s) | 784 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 2 cut(s) | 562, 947 |
| Eco24I | GRGCYC | 2 cut(s) | 564, 949 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 2 cut(s) | 562, 947 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 758 |
| EcoICRI | GAGCTC | 2 cut(s) | 562, 947 |
| EcoO65I | GGTNACC | 1 cut(s) | 758 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT38I | GRGCYC | 2 cut(s) | 564, 949 |
| EgeI | GGCGCC | 2 cut(s) | 686, 826 |
| EheI | GGCGCC | 2 cut(s) | 686, 826 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 4 cut(s) | 560, 596, 818, 953 |
| FatI | CATG | 4 cut(s) | 556, 592, 814, 949 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FbaI | TGATCA | 2 cut(s) | 922, 1018 |
| FblI | GTMKAC | 1 cut(s) | 713 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| FriOI | GRGCYC | 2 cut(s) | 564, 949 |
| FspBI | CTAG | 4 cut(s) | 45, 126, 222, 338 |
| GlaI | GCGC | 3 cut(s) | 686, 826, 867 |
| HaeII | RGCGCY | 3 cut(s) | 688, 828, 869 |
| HaeIII | GGCC | 2 cut(s) | 95, 813 |
| HapII | CCGG | 1 cut(s) | 650 |
| HgaI | GACGC | 1 cut(s) | 863 |
| HhaI | GCGC | 3 cut(s) | 687, 827, 868 |
| Hin1I | GRCGYC | 2 cut(s) | 685, 825 |
| Hin1II | CATG | 4 cut(s) | 560, 596, 818, 953 |
| Hin6I | GCGC | 3 cut(s) | 685, 825, 866 |
| HinP1I | GCGC | 3 cut(s) | 685, 825, 866 |
| HinfI | GANTC | 7 cut(s) | 102, 115, 236, 320, 472, 522, 653 |
| HpaII | CCGG | 1 cut(s) | 650 |
| HphI | GGTGA | 2 cut(s) | 211, 955 |
| Hpy166II | GTNNAC | 1 cut(s) | 714 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 400, 730, 922 |
| Hpy8I | GTNNAC | 1 cut(s) | 714 |
| HpyAV | CCTTC | 3 cut(s) | 270, 493, 749 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 2 cut(s) | 497, 536 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 691, 863, 974, 995 |
| HpyF3I | CTNAG | 6 cut(s) | 156, 184, 510, 675, 707, 837 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92I | GRCGYC | 2 cut(s) | 685, 825 |
| Hsp92II | CATG | 4 cut(s) | 560, 596, 818, 953 |
| HspAI | GCGC | 3 cut(s) | 685, 825, 866 |
| KasI | GGCGCC | 2 cut(s) | 684, 824 |
| Kpn2I | TCCGGA | 1 cut(s) | 649 |
| Ksp22I | TGATCA | 2 cut(s) | 922, 1018 |
| Kzo9I | GATC | 7 cut(s) | 444, 543, 626, 730, 922, 1018, 1030 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 569 |
| LweI | GCATC | 1 cut(s) | 442 |
| MaeI | CTAG | 4 cut(s) | 45, 126, 222, 338 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 3 cut(s) | 317, 758, 961 |
| MalI | GATC | 7 cut(s) | 446, 545, 628, 732, 924, 1020, 1032 |
| MboI | GATC | 7 cut(s) | 444, 543, 626, 730, 922, 1018, 1030 |
| MboII | GAAGA | 6 cut(s) | 275, 278, 481, 801, 965, 1037 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MhlI | GDGCHC | 3 cut(s) | 564, 934, 949 |
| MlsI | TGGCCA | 1 cut(s) | 813 |
| MluCI | AATT | 4 cut(s) | 17, 428, 619, 658 |
| MluNI | TGGCCA | 1 cut(s) | 813 |
| Mly113I | GGCGCC | 2 cut(s) | 685, 825 |
| MlyI | GAGTC | 2 cut(s) | 314, 466 |
| MnlI | CCTC | 9 cut(s) | 181, 368, 497, 674, 682, 787, 791, 817, 879 |
| Mox20I | TGGCCA | 1 cut(s) | 813 |
| MroI | TCCGGA | 1 cut(s) | 649 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MscI | TGGCCA | 1 cut(s) | 813 |
| MseI | TTAA | 3 cut(s) | 414, 422, 531 |
| MslI | CAYNNNNRTG | 4 cut(s) | 215, 231, 819, 849 |
| Msp20I | TGGCCA | 1 cut(s) | 813 |
| MspI | CCGG | 1 cut(s) | 650 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 691, 863, 974, 995 |
| NarI | GGCGCC | 2 cut(s) | 685, 825 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 7 cut(s) | 444, 543, 626, 730, 922, 1018, 1030 |
| NlaIII | CATG | 4 cut(s) | 560, 596, 818, 953 |
| NlaIV | GGNNCC | 3 cut(s) | 686, 785, 826 |
| NmuCI | GTSAC | 2 cut(s) | 317, 961 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 2 cut(s) | 556, 949 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 236, 522, 653 |
| PleI | GAGTC | 2 cut(s) | 314, 466 |
| PluTI | GGCGCC | 2 cut(s) | 688, 828 |
| PpsI | GAGTC | 2 cut(s) | 314, 466 |
| Psp124BI | GAGCTC | 2 cut(s) | 564, 949 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspEI | GGTNACC | 1 cut(s) | 758 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 3 cut(s) | 686, 785, 826 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RseI | CAYNNNNRTG | 4 cut(s) | 215, 231, 819, 849 |
| SacI | GAGCTC | 2 cut(s) | 564, 949 |
| SaqAI | TTAA | 3 cut(s) | 414, 422, 531 |
| Sau3AI | GATC | 7 cut(s) | 444, 543, 626, 730, 922, 1018, 1030 |
| SchI | GAGTC | 2 cut(s) | 314, 466 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 3 cut(s) | 564, 934, 949 |
| SfaNI | GCATC | 1 cut(s) | 442 |
| SfoI | GGCGCC | 2 cut(s) | 686, 826 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 215, 231, 819, 849 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| SpeI | ACTAGT | 1 cut(s) | 221 |
| Sse9I | AATT | 4 cut(s) | 17, 428, 619, 658 |
| SsiI | CCGC | 4 cut(s) | 79, 361, 763, 966 |
| SspDI | GGCGCC | 2 cut(s) | 684, 824 |
| SspMI | CTAG | 4 cut(s) | 45, 126, 222, 338 |
| SstI | GAGCTC | 2 cut(s) | 564, 949 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 6 cut(s) | 120, 520, 525, 623, 885, 907 |
| TasI | AATT | 4 cut(s) | 17, 428, 619, 658 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 236, 522, 653 |
| Tru1I | TTAA | 3 cut(s) | 414, 422, 531 |
| Tru9I | TTAA | 3 cut(s) | 414, 422, 531 |
| TseFI | GTSAC | 2 cut(s) | 317, 961 |
| Tsp45I | GTSAC | 2 cut(s) | 317, 961 |
| TspDTI | ATGAA | 4 cut(s) | 276, 545, 590, 966 |
| TspGWI | ACGGA | 3 cut(s) | 305, 556, 796 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmiI | GTMKAC | 1 cut(s) | 713 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 4 cut(s) | 45, 126, 222, 338 |