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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 336, 381, 453 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 444, 674 |
| AccB1I | GGYRCC | 1 cut(s) | 536 |
| AccBSI | CCGCTC | 1 cut(s) | 409 |
| AciI | CCGC | 3 cut(s) | 409, 457, 762 |
| AclWI | GGATC | 1 cut(s) | 269 |
| AcvI | CACGTG | 2 cut(s) | 500, 518 |
| AcyI | GRCGYC | 1 cut(s) | 537 |
| AdeI | CACNNNGTG | 1 cut(s) | 503 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfeI | AGCGCT | 1 cut(s) | 10 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 396, 466 |
| AflIII | ACRYGT | 4 cut(s) | 439, 497, 515, 567 |
| AgsI | TTSAA | 7 cut(s) | 59, 66, 95, 342, 607, 689, 733 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 161 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 7, 39 |
| AluBI | AGCT | 7 cut(s) | 22, 122, 178, 280, 302, 635, 737 |
| AluI | AGCT | 7 cut(s) | 22, 122, 178, 280, 302, 635, 737 |
| Alw21I | GWGCWC | 1 cut(s) | 753 |
| Alw26I | GTCTC | 2 cut(s) | 214, 229 |
| Alw44I | GTGCAC | 1 cut(s) | 749 |
| AlwI | GGATC | 1 cut(s) | 269 |
| Aor51HI | AGCGCT | 1 cut(s) | 10 |
| AoxI | GGCC | 1 cut(s) | 344 |
| ApaLI | GTGCAC | 1 cut(s) | 749 |
| ApeKI | GCWGC | 1 cut(s) | 635 |
| AseI | ATTAAT | 1 cut(s) | 597 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 123 |
| AspLEI | GCGC | 3 cut(s) | 11, 402, 539 |
| AspS9I | GGNCC | 3 cut(s) | 345, 446, 667 |
| AsuHPI | GGTGA | 2 cut(s) | 709, 713 |
| AvaII | GGWCC | 2 cut(s) | 446, 667 |
| BaeGI | GKGCMC | 1 cut(s) | 753 |
| BanI | GGYRCC | 1 cut(s) | 536 |
| BauI | CACGAG | 1 cut(s) | 265 |
| BbrPI | CACGTG | 2 cut(s) | 500, 518 |
| Bbv12I | GWGCWC | 1 cut(s) | 753 |
| BbvI | GCAGC | 1 cut(s) | 622 |
| BccI | CCATC | 2 cut(s) | 428, 692 |
| BciVI | GTATCC | 1 cut(s) | 487 |
| BcoDI | GTCTC | 2 cut(s) | 214, 229 |
| BfaI | CTAG | 3 cut(s) | 12, 632, 738 |
| BfmI | CTRYAG | 1 cut(s) | 297 |
| BfoI | RGCGCY | 2 cut(s) | 12, 540 |
| BfuI | GTATCC | 1 cut(s) | 487 |
| BisI | GCNGC | 2 cut(s) | 636, 762 |
| BlsI | GCNGC | 2 cut(s) | 637, 763 |
| Bme18I | GGWCC | 2 cut(s) | 446, 667 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 161 |
| BmgT120I | GGNCC | 3 cut(s) | 345, 446, 667 |
| BmiI | GGNNCC | 3 cut(s) | 413, 447, 538 |
| BmsI | GCATC | 1 cut(s) | 748 |
| BoxI | GACNNNNGTC | 1 cut(s) | 570 |
| Bsa29I | ATCGAT | 1 cut(s) | 577 |
| BsaAI | YACGTR | 2 cut(s) | 500, 518 |
| BsaBI | GATNNNNATC | 1 cut(s) | 711 |
| BsaHI | GRCGYC | 1 cut(s) | 537 |
| BsaI | GGTCTC | 1 cut(s) | 229 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 396, 466 |
| Bse3DI | GCAATG | 2 cut(s) | 35, 617 |
| Bse8I | GATNNNNATC | 1 cut(s) | 711 |
| BseCI | ATCGAT | 1 cut(s) | 577 |
| BseGI | GGATG | 1 cut(s) | 763 |
| BseJI | GATNNNNATC | 1 cut(s) | 711 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 396, 466 |
| BseMI | GCAATG | 2 cut(s) | 35, 617 |
| BseMII | CTCAG | 2 cut(s) | 225, 294 |
| BseRI | GAGGAG | 2 cut(s) | 36, 386 |
| BseSI | GKGCMC | 1 cut(s) | 753 |
| BseXI | GCAGC | 1 cut(s) | 622 |
| BsgI | GTGCAG | 1 cut(s) | 621 |
| BshFI | GGCC | 1 cut(s) | 346 |
| BshNI | GGYRCC | 1 cut(s) | 536 |
| BshVI | ATCGAT | 1 cut(s) | 577 |
| BsiHKAI | GWGCWC | 1 cut(s) | 753 |
| BsiSI | CCGG | 1 cut(s) | 543 |
| BslFI | GGGAC | 2 cut(s) | 441, 671 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 396, 466 |
| BsmAI | GTCTC | 2 cut(s) | 214, 229 |
| BsmBI | CGTCTC | 1 cut(s) | 214 |
| BsmFI | GGGAC | 2 cut(s) | 441, 671 |
| BsnI | GGCC | 1 cut(s) | 346 |
| Bso31I | GGTCTC | 1 cut(s) | 229 |
| Bsp1286I | GDGCHC | 1 cut(s) | 753 |
| Bsp143I | GATC | 1 cut(s) | 261 |
| BspACI | CCGC | 3 cut(s) | 409, 457, 762 |
| BspANI | GGCC | 1 cut(s) | 346 |
| BspCNI | CTCAG | 2 cut(s) | 224, 295 |
| BspDI | ATCGAT | 1 cut(s) | 577 |
| BspHI | TCATGA | 1 cut(s) | 324 |
| BspLI | GGNNCC | 3 cut(s) | 413, 447, 538 |
| BspPI | GGATC | 1 cut(s) | 269 |
| BspQI | GCTCTTC | 1 cut(s) | 129 |
| BspT107I | GGYRCC | 1 cut(s) | 536 |
| BspTNI | GGTCTC | 1 cut(s) | 229 |
| BsrBI | CCGCTC | 1 cut(s) | 409 |
| BsrDI | GCAATG | 2 cut(s) | 35, 617 |
| BssMI | GATC | 1 cut(s) | 261 |
| BssNI | GRCGYC | 1 cut(s) | 537 |
| BssSI | CACGAG | 1 cut(s) | 265 |
| Bst2BI | CACGAG | 1 cut(s) | 265 |
| Bst6I | CTCTTC | 2 cut(s) | 10, 129 |
| BstACI | GRCGYC | 1 cut(s) | 537 |
| BstBAI | YACGTR | 2 cut(s) | 500, 518 |
| BstC8I | GCNNGC | 1 cut(s) | 640 |
| BstDEI | CTNAG | 4 cut(s) | 211, 303, 357, 417 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 464 |
| BstF5I | GGATG | 1 cut(s) | 763 |
| BstH2I | RGCGCY | 2 cut(s) | 12, 540 |
| BstHHI | GCGC | 3 cut(s) | 11, 402, 539 |
| BstKTI | GATC | 1 cut(s) | 264 |
| BstMAI | GTCTC | 2 cut(s) | 214, 229 |
| BstMBI | GATC | 1 cut(s) | 261 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 406, 543, 552 |
| BstNSI | RCATGY | 2 cut(s) | 443, 571 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 570 |
| BstSFI | CTRYAG | 1 cut(s) | 297 |
| BstSLI | GKGCMC | 1 cut(s) | 753 |
| BstV1I | GCAGC | 1 cut(s) | 622 |
| Bsu15I | ATCGAT | 1 cut(s) | 577 |
| BsuI | GTATCC | 1 cut(s) | 487 |
| BsuRI | GGCC | 1 cut(s) | 346 |
| BsuTUI | ATCGAT | 1 cut(s) | 577 |
| BtsCI | GGATG | 1 cut(s) | 763 |
| Cac8I | GCNNGC | 1 cut(s) | 640 |
| CciI | TCATGA | 1 cut(s) | 324 |
| CfoI | GCGC | 3 cut(s) | 11, 402, 539 |
| Cfr13I | GGNCC | 3 cut(s) | 345, 446, 667 |
| ClaI | ATCGAT | 1 cut(s) | 577 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 7 cut(s) | 139, 311, 325, 431, 440, 568, 661 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 4 cut(s) | 211, 303, 357, 417 |
| DinI | GGCGCC | 1 cut(s) | 538 |
| DpnI | GATC | 1 cut(s) | 263 |
| DpnII | GATC | 1 cut(s) | 261 |
| DraIII | CACNNNGTG | 1 cut(s) | 503 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 444, 674 |
| DriI | GACNNNNNGTC | 1 cut(s) | 161 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 444, 674 |
| Eam1104I | CTCTTC | 2 cut(s) | 10, 129 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 161 |
| EarI | CTCTTC | 2 cut(s) | 10, 129 |
| Eco31I | GGTCTC | 1 cut(s) | 229 |
| Eco47I | GGWCC | 2 cut(s) | 446, 667 |
| Eco47III | AGCGCT | 1 cut(s) | 10 |
| Eco72I | CACGTG | 2 cut(s) | 500, 518 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 464 |
| EcoO109I | RGGNCCY | 1 cut(s) | 446 |
| EgeI | GGCGCC | 1 cut(s) | 538 |
| EheI | GGCGCC | 1 cut(s) | 538 |
| Esp3I | CGTCTC | 1 cut(s) | 214 |
| FaeI | CATG | 7 cut(s) | 142, 314, 328, 434, 443, 571, 664 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 666, 698 |
| FaqI | GGGAC | 2 cut(s) | 441, 671 |
| FatI | CATG | 7 cut(s) | 138, 310, 324, 430, 439, 567, 660 |
| Fnu4HI | GCNGC | 2 cut(s) | 636, 762 |
| FokI | GGATG | 1 cut(s) | 770 |
| Fsp4HI | GCNGC | 2 cut(s) | 636, 762 |
| FspBI | CTAG | 3 cut(s) | 12, 632, 738 |
| GlaI | GCGC | 3 cut(s) | 10, 401, 538 |
| GluI | GCNGC | 2 cut(s) | 636, 762 |
| HaeII | RGCGCY | 2 cut(s) | 12, 540 |
| HaeIII | GGCC | 1 cut(s) | 346 |
| HapII | CCGG | 1 cut(s) | 543 |
| HhaI | GCGC | 3 cut(s) | 11, 402, 539 |
| Hin1I | GRCGYC | 1 cut(s) | 537 |
| Hin1II | CATG | 7 cut(s) | 142, 314, 328, 434, 443, 571, 664 |
| Hin6I | GCGC | 3 cut(s) | 9, 400, 537 |
| HinP1I | GCGC | 3 cut(s) | 9, 400, 537 |
| HincII | GTYRAC | 1 cut(s) | 629 |
| HindII | GTYRAC | 1 cut(s) | 629 |
| HinfI | GANTC | 2 cut(s) | 39, 147 |
| HpaII | CCGG | 1 cut(s) | 543 |
| HphI | GGTGA | 2 cut(s) | 709, 713 |
| Hpy166II | GTNNAC | 3 cut(s) | 155, 629, 751 |
| Hpy188I | TCNGA | 1 cut(s) | 118 |
| Hpy188III | TCNNGA | 3 cut(s) | 173, 265, 325 |
| Hpy8I | GTNNAC | 3 cut(s) | 155, 629, 751 |
| HpyAV | CCTTC | 3 cut(s) | 53, 464, 658 |
| HpyCH4IV | ACGT | 3 cut(s) | 477, 499, 517 |
| HpyCH4V | TGCA | 5 cut(s) | 87, 386, 615, 638, 751 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 406, 543, 552 |
| HpyF3I | CTNAG | 4 cut(s) | 211, 303, 357, 417 |
| HpySE526I | ACGT | 3 cut(s) | 477, 499, 517 |
| Hsp92I | GRCGYC | 1 cut(s) | 537 |
| Hsp92II | CATG | 7 cut(s) | 142, 314, 328, 434, 443, 571, 664 |
| HspAI | GCGC | 3 cut(s) | 9, 400, 537 |
| KasI | GGCGCC | 1 cut(s) | 536 |
| Kzo9I | GATC | 1 cut(s) | 261 |
| LguI | GCTCTTC | 1 cut(s) | 129 |
| LmnI | GCTCC | 2 cut(s) | 70, 406 |
| LpnPI | CCDG | 2 cut(s) | 174, 556 |
| Lsp1109I | GCAGC | 1 cut(s) | 622 |
| LweI | GCATC | 1 cut(s) | 748 |
| MaeI | CTAG | 3 cut(s) | 12, 632, 738 |
| MaeII | ACGT | 3 cut(s) | 477, 499, 517 |
| MaeIII | GTNAC | 2 cut(s) | 163, 511 |
| MalI | GATC | 1 cut(s) | 263 |
| MbiI | CCGCTC | 1 cut(s) | 409 |
| MboI | GATC | 1 cut(s) | 261 |
| MboII | GAAGA | 7 cut(s) | 27, 116, 340, 701, 704, 707, 716 |
| MhlI | GDGCHC | 1 cut(s) | 753 |
| MluCI | AATT | 8 cut(s) | 112, 180, 216, 331, 337, 376, 482, 598 |
| Mly113I | GGCGCC | 1 cut(s) | 537 |
| MmeI | TCCRAC | 2 cut(s) | 235, 331 |
| MnlI | CCTC | 8 cut(s) | 54, 57, 233, 261, 364, 484, 550, 718 |
| MroXI | GAANNNNTTC | 1 cut(s) | 123 |
| MseI | TTAA | 2 cut(s) | 462, 597 |
| MslI | CAYNNNNRTG | 3 cut(s) | 323, 579, 756 |
| MspI | CCGG | 1 cut(s) | 543 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 406, 543, 552 |
| NarI | GGCGCC | 1 cut(s) | 537 |
| NdeII | GATC | 1 cut(s) | 261 |
| NlaIII | CATG | 7 cut(s) | 142, 314, 328, 434, 443, 571, 664 |
| NlaIV | GGNNCC | 3 cut(s) | 413, 447, 538 |
| NmuCI | GTSAC | 2 cut(s) | 163, 511 |
| NspI | RCATGY | 2 cut(s) | 443, 571 |
| PagI | TCATGA | 1 cut(s) | 324 |
| PciI | ACATGT | 2 cut(s) | 439, 567 |
| PciSI | GCTCTTC | 1 cut(s) | 129 |
| PdmI | GAANNNNTTC | 1 cut(s) | 123 |
| PfeI | GAWTC | 2 cut(s) | 39, 147 |
| PkrI | GCNGC | 2 cut(s) | 637, 763 |
| PluTI | GGCGCC | 1 cut(s) | 540 |
| PmaCI | CACGTG | 2 cut(s) | 500, 518 |
| PmlI | CACGTG | 2 cut(s) | 500, 518 |
| Ppu21I | YACGTR | 2 cut(s) | 500, 518 |
| PpuMI | RGGWCCY | 1 cut(s) | 446 |
| PscI | ACATGT | 2 cut(s) | 439, 567 |
| PshAI | GACNNNNGTC | 1 cut(s) | 570 |
| PshBI | ATTAAT | 1 cut(s) | 597 |
| PsiI | TTATAA | 3 cut(s) | 336, 381, 453 |
| Psp5II | RGGWCCY | 1 cut(s) | 446 |
| PspCI | CACGTG | 2 cut(s) | 500, 518 |
| PspN4I | GGNNCC | 3 cut(s) | 413, 447, 538 |
| PspPI | GGNCC | 3 cut(s) | 345, 446, 667 |
| PspPPI | RGGWCCY | 1 cut(s) | 446 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 3 cut(s) | 323, 579, 756 |
| SapI | GCTCTTC | 1 cut(s) | 129 |
| SaqAI | TTAA | 2 cut(s) | 462, 597 |
| SatI | GCNGC | 2 cut(s) | 636, 762 |
| Sau3AI | GATC | 1 cut(s) | 261 |
| Sau96I | GGNCC | 3 cut(s) | 345, 446, 667 |
| SduI | GDGCHC | 1 cut(s) | 753 |
| SfaNI | GCATC | 1 cut(s) | 748 |
| SfcI | CTRYAG | 1 cut(s) | 297 |
| SfoI | GGCGCC | 1 cut(s) | 538 |
| SinI | GGWCC | 2 cut(s) | 446, 667 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 323, 579, 756 |
| Sse9I | AATT | 8 cut(s) | 112, 180, 216, 331, 337, 376, 482, 598 |
| SsiI | CCGC | 3 cut(s) | 409, 457, 762 |
| SspDI | GGCGCC | 1 cut(s) | 536 |
| SspMI | CTAG | 3 cut(s) | 12, 632, 738 |
| TaiI | ACGT | 3 cut(s) | 480, 502, 520 |
| TaqI | TCGA | 1 cut(s) | 577 |
| TasI | AATT | 8 cut(s) | 112, 180, 216, 331, 337, 376, 482, 598 |
| TatI | WGTACW | 1 cut(s) | 246 |
| TauI | GCSGC | 1 cut(s) | 764 |
| TfiI | GAWTC | 2 cut(s) | 39, 147 |
| Tru1I | TTAA | 2 cut(s) | 462, 597 |
| Tru9I | TTAA | 2 cut(s) | 462, 597 |
| TseFI | GTSAC | 2 cut(s) | 163, 511 |
| TseI | GCWGC | 1 cut(s) | 635 |
| Tsp45I | GTSAC | 2 cut(s) | 163, 511 |
| TspDTI | ATGAA | 4 cut(s) | 263, 341, 677, 759 |
| TspGWI | ACGGA | 1 cut(s) | 274 |
| VneI | GTGCAC | 1 cut(s) | 749 |
| VpaK11BI | GGWCC | 2 cut(s) | 446, 667 |
| VspI | ATTAAT | 1 cut(s) | 597 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 464 |
| XceI | RCATGY | 2 cut(s) | 443, 571 |
| XmnI | GAANNNNTTC | 1 cut(s) | 123 |
| XspI | CTAG | 3 cut(s) | 12, 632, 738 |