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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 402, 447 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 513 |
| AatII | GACGTC | 1 cut(s) | 649 |
| AccB1I | GGYRCC | 1 cut(s) | 626 |
| AccBSI | CCGCTC | 2 cut(s) | 478, 560 |
| AciI | CCGC | 3 cut(s) | 478, 526, 560 |
| AclWI | GGATC | 2 cut(s) | 335, 730 |
| AcoI | YGGCCR | 1 cut(s) | 613 |
| AcvI | CACGTG | 1 cut(s) | 569 |
| AcyI | GRCGYC | 3 cut(s) | 7, 627, 646 |
| AfaI | GTAC | 1 cut(s) | 38 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 210, 535, 618 |
| AflIII | ACRYGT | 1 cut(s) | 566 |
| AgsI | TTSAA | 7 cut(s) | 124, 131, 160, 408, 434, 685, 731 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 5 cut(s) | 85, 170, 244, 346, 368 |
| AluI | AGCT | 5 cut(s) | 85, 170, 244, 346, 368 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| AlwI | GGATC | 2 cut(s) | 335, 730 |
| AoxI | GGCC | 3 cut(s) | 410, 580, 613 |
| ApeKI | GCWGC | 1 cut(s) | 608 |
| AseI | ATTAAT | 1 cut(s) | 351 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 84 |
| AspLEI | GCGC | 3 cut(s) | 76, 471, 629 |
| BaeGI | GKGCMC | 1 cut(s) | 603 |
| BanI | GGYRCC | 1 cut(s) | 626 |
| BauI | CACGAG | 2 cut(s) | 331, 389 |
| BbrPI | CACGTG | 1 cut(s) | 569 |
| BbvI | GCAGC | 1 cut(s) | 595 |
| BccI | CCATC | 1 cut(s) | 548 |
| BciVI | GTATCC | 2 cut(s) | 46, 97 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| BfaI | CTAG | 2 cut(s) | 57, 77 |
| BfmI | CTRYAG | 2 cut(s) | 165, 363 |
| BfoI | RGCGCY | 1 cut(s) | 630 |
| BfuI | GTATCC | 2 cut(s) | 46, 97 |
| BisI | GCNGC | 1 cut(s) | 609 |
| BlsI | GCNGC | 1 cut(s) | 610 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| BmiI | GGNNCC | 2 cut(s) | 482, 628 |
| BmsI | GCATC | 2 cut(s) | 683, 694 |
| BsaAI | YACGTR | 1 cut(s) | 569 |
| BsaBI | GATNNNNATC | 1 cut(s) | 721 |
| BsaHI | GRCGYC | 3 cut(s) | 7, 627, 646 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 210, 535, 618 |
| Bse118I | RCCGGY | 1 cut(s) | 611 |
| Bse1I | ACTGG | 2 cut(s) | 227, 325 |
| Bse8I | GATNNNNATC | 1 cut(s) | 721 |
| BseJI | GATNNNNATC | 1 cut(s) | 721 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 210, 535, 618 |
| BseNI | ACTGG | 2 cut(s) | 227, 325 |
| BseRI | GAGGAG | 2 cut(s) | 101, 609 |
| BseSI | GKGCMC | 1 cut(s) | 603 |
| BseXI | GCAGC | 1 cut(s) | 595 |
| BshFI | GGCC | 3 cut(s) | 412, 582, 615 |
| BshNI | GGYRCC | 1 cut(s) | 626 |
| BsiSI | CCGG | 1 cut(s) | 612 |
| BslFI | GGGAC | 1 cut(s) | 510 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 210, 535, 618 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 1 cut(s) | 510 |
| BsnI | GGCC | 3 cut(s) | 412, 582, 615 |
| Bsp1286I | GDGCHC | 1 cut(s) | 603 |
| Bsp143I | GATC | 2 cut(s) | 327, 722 |
| BspACI | CCGC | 3 cut(s) | 478, 526, 560 |
| BspANI | GGCC | 3 cut(s) | 412, 582, 615 |
| BspLI | GGNNCC | 2 cut(s) | 482, 628 |
| BspPI | GGATC | 2 cut(s) | 335, 730 |
| BspQI | GCTCTTC | 1 cut(s) | 75 |
| BspT107I | GGYRCC | 1 cut(s) | 626 |
| BsrBI | CCGCTC | 2 cut(s) | 478, 560 |
| BsrFI | RCCGGY | 1 cut(s) | 611 |
| BsrI | ACTGG | 2 cut(s) | 227, 325 |
| BssAI | RCCGGY | 1 cut(s) | 611 |
| BssMI | GATC | 2 cut(s) | 327, 722 |
| BssNI | GRCGYC | 3 cut(s) | 7, 627, 646 |
| BssSI | CACGAG | 2 cut(s) | 331, 389 |
| Bst2BI | CACGAG | 2 cut(s) | 331, 389 |
| Bst6I | CTCTTC | 2 cut(s) | 75, 586 |
| BstACI | GRCGYC | 3 cut(s) | 7, 627, 646 |
| BstBAI | YACGTR | 1 cut(s) | 569 |
| BstC8I | GCNNGC | 2 cut(s) | 613, 709 |
| BstDEI | CTNAG | 1 cut(s) | 423 |
| BstH2I | RGCGCY | 1 cut(s) | 630 |
| BstHHI | GCGC | 3 cut(s) | 76, 471, 629 |
| BstKTI | GATC | 2 cut(s) | 330, 725 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstMBI | GATC | 2 cut(s) | 327, 722 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 82, 295, 475, 579, 671 |
| BstNSI | RCATGY | 1 cut(s) | 711 |
| BstSFI | CTRYAG | 2 cut(s) | 165, 363 |
| BstSLI | GKGCMC | 1 cut(s) | 603 |
| BstV1I | GCAGC | 1 cut(s) | 595 |
| BstX2I | RGATCY | 1 cut(s) | 722 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 623, 719 |
| BstYI | RGATCY | 1 cut(s) | 722 |
| BsuI | GTATCC | 2 cut(s) | 46, 97 |
| BsuRI | GGCC | 3 cut(s) | 412, 582, 615 |
| Cac8I | GCNNGC | 2 cut(s) | 613, 709 |
| CfoI | GCGC | 3 cut(s) | 76, 471, 629 |
| Cfr10I | RCCGGY | 1 cut(s) | 611 |
| CseI | GACGC | 1 cut(s) | 15 |
| Csp6I | GTAC | 1 cut(s) | 37 |
| CviAII | CATG | 7 cut(s) | 13, 40, 205, 358, 377, 662, 708 |
| CviQI | GTAC | 1 cut(s) | 37 |
| DdeI | CTNAG | 1 cut(s) | 423 |
| DinI | GGCGCC | 1 cut(s) | 628 |
| DpnI | GATC | 2 cut(s) | 329, 724 |
| DpnII | GATC | 2 cut(s) | 327, 722 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 513 |
| DriI | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 513 |
| EaeI | YGGCCR | 1 cut(s) | 613 |
| Eam1104I | CTCTTC | 2 cut(s) | 75, 586 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 160, 227 |
| EarI | CTCTTC | 2 cut(s) | 75, 586 |
| Eco147I | AGGCCT | 1 cut(s) | 412 |
| Eco72I | CACGTG | 1 cut(s) | 569 |
| EcoT22I | ATGCAT | 1 cut(s) | 709 |
| EgeI | GGCGCC | 1 cut(s) | 628 |
| EheI | GGCGCC | 1 cut(s) | 628 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 7 cut(s) | 16, 43, 208, 361, 380, 665, 711 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 72, 104 |
| FaqI | GGGAC | 1 cut(s) | 510 |
| FatI | CATG | 7 cut(s) | 12, 39, 204, 357, 376, 661, 707 |
| FauI | CCCGC | 1 cut(s) | 553 |
| Fnu4HI | GCNGC | 1 cut(s) | 609 |
| Fsp4HI | GCNGC | 1 cut(s) | 609 |
| FspBI | CTAG | 2 cut(s) | 57, 77 |
| GlaI | GCGC | 3 cut(s) | 75, 470, 628 |
| GluI | GCNGC | 1 cut(s) | 609 |
| HaeII | RGCGCY | 1 cut(s) | 630 |
| HaeIII | GGCC | 3 cut(s) | 412, 582, 615 |
| HapII | CCGG | 1 cut(s) | 612 |
| HgaI | GACGC | 1 cut(s) | 15 |
| HhaI | GCGC | 3 cut(s) | 76, 471, 629 |
| Hin1I | GRCGYC | 3 cut(s) | 7, 627, 646 |
| Hin1II | CATG | 7 cut(s) | 16, 43, 208, 361, 380, 665, 711 |
| Hin6I | GCGC | 3 cut(s) | 74, 469, 627 |
| HinP1I | GCGC | 3 cut(s) | 74, 469, 627 |
| HinfI | GANTC | 1 cut(s) | 147 |
| HpaII | CCGG | 1 cut(s) | 612 |
| Hpy166II | GTNNAC | 1 cut(s) | 221 |
| Hpy188III | TCNNGA | 3 cut(s) | 331, 391, 434 |
| Hpy8I | GTNNAC | 1 cut(s) | 221 |
| HpyAV | CCTTC | 2 cut(s) | 277, 533 |
| HpyCH4IV | ACGT | 3 cut(s) | 568, 586, 646 |
| HpyCH4V | TGCA | 3 cut(s) | 455, 665, 707 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 82, 295, 475, 579, 671 |
| HpyF3I | CTNAG | 1 cut(s) | 423 |
| HpySE526I | ACGT | 3 cut(s) | 568, 586, 646 |
| Hsp92I | GRCGYC | 3 cut(s) | 7, 627, 646 |
| Hsp92II | CATG | 7 cut(s) | 16, 43, 208, 361, 380, 665, 711 |
| HspAI | GCGC | 3 cut(s) | 74, 469, 627 |
| KasI | GGCGCC | 1 cut(s) | 626 |
| KroI | GCCGGC | 1 cut(s) | 611 |
| KroNI | GCCGGC | 1 cut(s) | 613 |
| Kzo9I | GATC | 2 cut(s) | 327, 722 |
| LguI | GCTCTTC | 1 cut(s) | 75 |
| LmnI | GCTCC | 3 cut(s) | 135, 475, 557 |
| LpnPI | CCDG | 3 cut(s) | 240, 306, 625 |
| Lsp1109I | GCAGC | 1 cut(s) | 595 |
| LweI | GCATC | 2 cut(s) | 683, 694 |
| MaeI | CTAG | 2 cut(s) | 57, 77 |
| MaeII | ACGT | 3 cut(s) | 568, 586, 646 |
| MaeIII | GTNAC | 1 cut(s) | 229 |
| MalI | GATC | 2 cut(s) | 329, 724 |
| MbiI | CCGCTC | 2 cut(s) | 478, 560 |
| MboI | GATC | 2 cut(s) | 327, 722 |
| MboII | GAAGA | 3 cut(s) | 92, 406, 603 |
| MfeI | CAATTG | 1 cut(s) | 29 |
| MflI | RGATCY | 1 cut(s) | 722 |
| MhlI | GDGCHC | 1 cut(s) | 603 |
| Mly113I | GGCGCC | 1 cut(s) | 627 |
| MmeI | TCCRAC | 1 cut(s) | 661 |
| Mph1103I | ATGCAT | 1 cut(s) | 709 |
| MroNI | GCCGGC | 1 cut(s) | 611 |
| MroXI | GAANNNNTTC | 1 cut(s) | 84 |
| MseI | TTAA | 1 cut(s) | 351 |
| MslI | CAYNNNNRTG | 2 cut(s) | 621, 717 |
| MspI | CCGG | 1 cut(s) | 612 |
| MunI | CAATTG | 1 cut(s) | 29 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 82, 295, 475, 579, 671 |
| NaeI | GCCGGC | 1 cut(s) | 613 |
| NarI | GGCGCC | 1 cut(s) | 627 |
| NdeII | GATC | 2 cut(s) | 327, 722 |
| NgoMIV | GCCGGC | 1 cut(s) | 611 |
| NlaIII | CATG | 7 cut(s) | 16, 43, 208, 361, 380, 665, 711 |
| NlaIV | GGNNCC | 2 cut(s) | 482, 628 |
| NmuCI | GTSAC | 1 cut(s) | 229 |
| NsiI | ATGCAT | 1 cut(s) | 709 |
| NspI | RCATGY | 1 cut(s) | 711 |
| PaeI | GCATGC | 1 cut(s) | 711 |
| PceI | AGGCCT | 1 cut(s) | 412 |
| PciSI | GCTCTTC | 1 cut(s) | 75 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 652 |
| PdiI | GCCGGC | 1 cut(s) | 613 |
| PdmI | GAANNNNTTC | 1 cut(s) | 84 |
| PfeI | GAWTC | 1 cut(s) | 147 |
| PkrI | GCNGC | 1 cut(s) | 610 |
| PluTI | GGCGCC | 1 cut(s) | 630 |
| PmaCI | CACGTG | 1 cut(s) | 569 |
| PmlI | CACGTG | 1 cut(s) | 569 |
| Ppu21I | YACGTR | 1 cut(s) | 569 |
| PshBI | ATTAAT | 1 cut(s) | 351 |
| PsiI | TTATAA | 2 cut(s) | 402, 447 |
| PspCI | CACGTG | 1 cut(s) | 569 |
| PspN4I | GGNNCC | 2 cut(s) | 482, 628 |
| PsuI | RGATCY | 1 cut(s) | 722 |
| RsaI | GTAC | 1 cut(s) | 38 |
| RsaNI | GTAC | 1 cut(s) | 37 |
| RseI | CAYNNNNRTG | 2 cut(s) | 621, 717 |
| SapI | GCTCTTC | 1 cut(s) | 75 |
| SaqAI | TTAA | 1 cut(s) | 351 |
| SatI | GCNGC | 1 cut(s) | 609 |
| Sau3AI | GATC | 2 cut(s) | 327, 722 |
| SduI | GDGCHC | 1 cut(s) | 603 |
| SfaNI | GCATC | 2 cut(s) | 683, 694 |
| SfcI | CTRYAG | 2 cut(s) | 165, 363 |
| SfoI | GGCGCC | 1 cut(s) | 628 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 621, 717 |
| SphI | GCATGC | 1 cut(s) | 711 |
| SseBI | AGGCCT | 1 cut(s) | 412 |
| SsiI | CCGC | 3 cut(s) | 478, 526, 560 |
| SspDI | GGCGCC | 1 cut(s) | 626 |
| SspMI | CTAG | 2 cut(s) | 57, 77 |
| StuI | AGGCCT | 1 cut(s) | 412 |
| TaiI | ACGT | 3 cut(s) | 571, 589, 649 |
| TatI | WGTACW | 1 cut(s) | 36 |
| TfiI | GAWTC | 1 cut(s) | 147 |
| Tru1I | TTAA | 1 cut(s) | 351 |
| Tru9I | TTAA | 1 cut(s) | 351 |
| TseFI | GTSAC | 1 cut(s) | 229 |
| TseI | GCWGC | 1 cut(s) | 608 |
| Tsp45I | GTSAC | 1 cut(s) | 229 |
| TspDTI | ATGAA | 1 cut(s) | 329 |
| TspGWI | ACGGA | 3 cut(s) | 148, 340, 519 |
| VspI | ATTAAT | 1 cut(s) | 351 |
| XceI | RCATGY | 1 cut(s) | 711 |
| XmnI | GAANNNNTTC | 1 cut(s) | 84 |
| XspI | CTAG | 2 cut(s) | 57, 77 |
| ZraI | GACGTC | 1 cut(s) | 647 |
| Zsp2I | ATGCAT | 1 cut(s) | 709 |