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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 501 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 564 |
| Acc36I | ACCTGC | 1 cut(s) | 591 |
| AccB1I | GGYRCC | 1 cut(s) | 608 |
| AciI | CCGC | 1 cut(s) | 577 |
| AclWI | GGATC | 1 cut(s) | 111 |
| AcvI | CACGTG | 1 cut(s) | 615 |
| AfeI | AGCGCT | 2 cut(s) | 228, 239 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 34, 515, 516, 586 |
| AgsI | TTSAA | 6 cut(s) | 66, 277, 284, 313, 462, 724 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 380 |
| AluBI | AGCT | 5 cut(s) | 217, 341, 400, 422, 728 |
| AluI | AGCT | 5 cut(s) | 217, 341, 400, 422, 728 |
| Alw21I | GWGCWC | 1 cut(s) | 744 |
| Alw44I | GTGCAC | 1 cut(s) | 740 |
| AlwI | GGATC | 1 cut(s) | 111 |
| Aor51HI | AGCGCT | 2 cut(s) | 228, 239 |
| AoxI | GGCC | 1 cut(s) | 464 |
| ApaLI | GTGCAC | 1 cut(s) | 740 |
| ApeKI | GCWGC | 1 cut(s) | 752 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 342 |
| AspLEI | GCGC | 4 cut(s) | 229, 240, 300, 522 |
| AspS9I | GGNCC | 3 cut(s) | 465, 566, 643 |
| AsuC2I | CCSGG | 1 cut(s) | 101 |
| AsuHPI | GGTGA | 1 cut(s) | 505 |
| AvaII | GGWCC | 2 cut(s) | 566, 643 |
| AxyI | CCTNAGG | 1 cut(s) | 647 |
| BaeGI | GKGCMC | 1 cut(s) | 744 |
| BanI | GGYRCC | 1 cut(s) | 608 |
| BbrPI | CACGTG | 1 cut(s) | 615 |
| Bbv12I | GWGCWC | 1 cut(s) | 744 |
| BbvI | GCAGC | 1 cut(s) | 739 |
| BccI | CCATC | 1 cut(s) | 683 |
| BcnI | CCSGG | 1 cut(s) | 101 |
| BfaI | CTAG | 1 cut(s) | 230 |
| BfmI | CTRYAG | 4 cut(s) | 350, 417, 598, 711 |
| BfoI | RGCGCY | 2 cut(s) | 230, 241 |
| BfuAI | ACCTGC | 1 cut(s) | 591 |
| BisI | GCNGC | 1 cut(s) | 753 |
| BlsI | GCNGC | 1 cut(s) | 754 |
| Bme1390I | CCNGG | 1 cut(s) | 101 |
| Bme18I | GGWCC | 2 cut(s) | 566, 643 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 380 |
| BmgT120I | GGNCC | 3 cut(s) | 465, 566, 643 |
| BmiI | GGNNCC | 3 cut(s) | 567, 610, 644 |
| BmrFI | CCNGG | 1 cut(s) | 101 |
| BmsI | GCATC | 3 cut(s) | 144, 196, 739 |
| BpmI | CTGGAG | 1 cut(s) | 750 |
| BpuEI | CTTGAG | 1 cut(s) | 123 |
| BpuMI | CCSGG | 1 cut(s) | 101 |
| BsaAI | YACGTR | 1 cut(s) | 615 |
| BsaBI | GATNNNNATC | 1 cut(s) | 702 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 179, 209, 723, 753 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 34, 515, 516, 586 |
| Bse21I | CCTNAGG | 1 cut(s) | 647 |
| Bse3DI | GCAATG | 1 cut(s) | 253 |
| Bse8I | GATNNNNATC | 1 cut(s) | 702 |
| BseGI | GGATG | 2 cut(s) | 211, 754 |
| BseJI | GATNNNNATC | 1 cut(s) | 702 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 34, 515, 516, 586 |
| BseMI | GCAATG | 1 cut(s) | 253 |
| BseMII | CTCAG | 3 cut(s) | 193, 414, 638 |
| BseRI | GAGGAG | 1 cut(s) | 254 |
| BseSI | GKGCMC | 1 cut(s) | 744 |
| BseXI | GCAGC | 1 cut(s) | 739 |
| BshFI | GGCC | 1 cut(s) | 466 |
| BshNI | GGYRCC | 1 cut(s) | 608 |
| BsiHKAI | GWGCWC | 1 cut(s) | 744 |
| BsiSI | CCGG | 1 cut(s) | 101 |
| BslFI | GGGAC | 2 cut(s) | 570, 656 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 34, 515, 516, 586 |
| BsmFI | GGGAC | 2 cut(s) | 570, 656 |
| BsnI | GGCC | 1 cut(s) | 466 |
| Bsp1286I | GDGCHC | 1 cut(s) | 744 |
| Bsp143I | GATC | 2 cut(s) | 103, 198 |
| BspACI | CCGC | 1 cut(s) | 577 |
| BspANI | GGCC | 1 cut(s) | 466 |
| BspCNI | CTCAG | 3 cut(s) | 192, 415, 639 |
| BspHI | TCATGA | 1 cut(s) | 487 |
| BspLI | GGNNCC | 3 cut(s) | 567, 610, 644 |
| BspMAI | CTGCAG | 1 cut(s) | 602 |
| BspMI | ACCTGC | 1 cut(s) | 591 |
| BspPI | GGATC | 1 cut(s) | 111 |
| BspQI | GCTCTTC | 2 cut(s) | 228, 348 |
| BspT107I | GGYRCC | 1 cut(s) | 608 |
| BsrDI | GCAATG | 1 cut(s) | 253 |
| BssMI | GATC | 2 cut(s) | 103, 198 |
| Bst4CI | ACNGT | 2 cut(s) | 32, 354 |
| Bst6I | CTCTTC | 2 cut(s) | 228, 348 |
| BstBAI | YACGTR | 1 cut(s) | 615 |
| BstC8I | GCNNGC | 1 cut(s) | 135 |
| BstDEI | CTNAG | 5 cut(s) | 179, 423, 477, 537, 647 |
| BstEII | GGTNACC | 1 cut(s) | 37 |
| BstF5I | GGATG | 2 cut(s) | 211, 754 |
| BstH2I | RGCGCY | 2 cut(s) | 230, 241 |
| BstHHI | GCGC | 4 cut(s) | 229, 240, 300, 522 |
| BstKTI | GATC | 2 cut(s) | 106, 201 |
| BstMBI | GATC | 2 cut(s) | 103, 198 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 235, 526 |
| BstNSI | RCATGY | 1 cut(s) | 137 |
| BstPI | GGTNACC | 1 cut(s) | 37 |
| BstSCI | CCNGG | 1 cut(s) | 99 |
| BstSFI | CTRYAG | 4 cut(s) | 350, 417, 598, 711 |
| BstSLI | GKGCMC | 1 cut(s) | 744 |
| BstV1I | GCAGC | 1 cut(s) | 739 |
| Bsu36I | CCTNAGG | 1 cut(s) | 647 |
| BsuRI | GGCC | 1 cut(s) | 466 |
| BtsCI | GGATG | 2 cut(s) | 211, 754 |
| BveI | ACCTGC | 1 cut(s) | 591 |
| Cac8I | GCNNGC | 1 cut(s) | 135 |
| CciI | TCATGA | 1 cut(s) | 487 |
| CfoI | GCGC | 4 cut(s) | 229, 240, 300, 522 |
| Cfr13I | GGNCC | 3 cut(s) | 465, 566, 643 |
| CviAII | CATG | 3 cut(s) | 134, 431, 488 |
| CviJI | RGCY | 7 cut(s) | 18, 217, 341, 400, 422, 466, 728 |
| CviKI_1 | RGCY | 7 cut(s) | 18, 217, 341, 400, 422, 466, 728 |
| DdeI | CTNAG | 5 cut(s) | 179, 423, 477, 537, 647 |
| DpnI | GATC | 2 cut(s) | 105, 200 |
| DpnII | GATC | 2 cut(s) | 103, 198 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 564 |
| DriI | GACNNNNNGTC | 1 cut(s) | 380 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 564 |
| Eam1104I | CTCTTC | 2 cut(s) | 228, 348 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 380 |
| EarI | CTCTTC | 2 cut(s) | 228, 348 |
| Eco47I | GGWCC | 2 cut(s) | 566, 643 |
| Eco47III | AGCGCT | 2 cut(s) | 228, 239 |
| Eco72I | CACGTG | 1 cut(s) | 615 |
| Eco81I | CCTNAGG | 1 cut(s) | 647 |
| Eco91I | GGTNACC | 1 cut(s) | 37 |
| EcoO109I | RGGNCCY | 1 cut(s) | 643 |
| EcoO65I | GGTNACC | 1 cut(s) | 37 |
| FaeI | CATG | 3 cut(s) | 137, 434, 491 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 651, 683 |
| FaqI | GGGAC | 2 cut(s) | 570, 656 |
| FatI | CATG | 3 cut(s) | 133, 430, 487 |
| FauNDI | CATATG | 1 cut(s) | 165 |
| Fnu4HI | GCNGC | 1 cut(s) | 753 |
| FokI | GGATG | 2 cut(s) | 218, 761 |
| Fsp4HI | GCNGC | 1 cut(s) | 753 |
| FspBI | CTAG | 1 cut(s) | 230 |
| GlaI | GCGC | 4 cut(s) | 228, 239, 299, 521 |
| GluI | GCNGC | 1 cut(s) | 753 |
| GsuI | CTGGAG | 1 cut(s) | 750 |
| HaeII | RGCGCY | 2 cut(s) | 230, 241 |
| HaeIII | GGCC | 1 cut(s) | 466 |
| HapII | CCGG | 1 cut(s) | 101 |
| HhaI | GCGC | 4 cut(s) | 229, 240, 300, 522 |
| Hin1II | CATG | 3 cut(s) | 137, 434, 491 |
| Hin6I | GCGC | 4 cut(s) | 227, 238, 298, 520 |
| HinP1I | GCGC | 4 cut(s) | 227, 238, 298, 520 |
| HinfI | GANTC | 2 cut(s) | 8, 257 |
| HpaII | CCGG | 1 cut(s) | 101 |
| HphI | GGTGA | 1 cut(s) | 505 |
| Hpy166II | GTNNAC | 2 cut(s) | 374, 742 |
| Hpy188I | TCNGA | 2 cut(s) | 182, 337 |
| Hpy188III | TCNNGA | 4 cut(s) | 88, 151, 445, 488 |
| Hpy8I | GTNNAC | 2 cut(s) | 374, 742 |
| HpyAV | CCTTC | 2 cut(s) | 271, 584 |
| HpyCH4III | ACNGT | 2 cut(s) | 32, 354 |
| HpyCH4IV | ACGT | 2 cut(s) | 559, 614 |
| HpyCH4V | TGCA | 7 cut(s) | 157, 209, 506, 600, 671, 742, 755 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 235, 526 |
| HpyF3I | CTNAG | 5 cut(s) | 179, 423, 477, 537, 647 |
| HpySE526I | ACGT | 2 cut(s) | 559, 614 |
| Hsp92II | CATG | 3 cut(s) | 137, 434, 491 |
| HspAI | GCGC | 4 cut(s) | 227, 238, 298, 520 |
| Kzo9I | GATC | 2 cut(s) | 103, 198 |
| LguI | GCTCTTC | 2 cut(s) | 228, 348 |
| LmnI | GCTCC | 2 cut(s) | 526, 652 |
| LpnPI | CCDG | 8 cut(s) | 101, 114, 282, 393, 586, 625, 659, 714 |
| Lsp1109I | GCAGC | 1 cut(s) | 739 |
| LweI | GCATC | 3 cut(s) | 144, 196, 739 |
| MaeI | CTAG | 1 cut(s) | 230 |
| MaeII | ACGT | 2 cut(s) | 559, 614 |
| MaeIII | GTNAC | 2 cut(s) | 37, 382 |
| MalI | GATC | 2 cut(s) | 105, 200 |
| MboI | GATC | 2 cut(s) | 103, 198 |
| MboII | GAAGA | 7 cut(s) | 245, 335, 686, 689, 692, 695, 698 |
| MhlI | GDGCHC | 1 cut(s) | 744 |
| MluCI | AATT | 3 cut(s) | 331, 457, 496 |
| MlyI | GAGTC | 1 cut(s) | 2 |
| MroXI | GAANNNNTTC | 1 cut(s) | 342 |
| MslI | CAYNNNNRTG | 2 cut(s) | 443, 747 |
| MspI | CCGG | 1 cut(s) | 101 |
| MspR9I | CCNGG | 1 cut(s) | 101 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 235, 526 |
| NciI | CCSGG | 1 cut(s) | 101 |
| NdeI | CATATG | 1 cut(s) | 165 |
| NdeII | GATC | 2 cut(s) | 103, 198 |
| NlaIII | CATG | 3 cut(s) | 137, 434, 491 |
| NlaIV | GGNNCC | 3 cut(s) | 567, 610, 644 |
| NmuCI | GTSAC | 1 cut(s) | 382 |
| NspI | RCATGY | 1 cut(s) | 137 |
| PaeI | GCATGC | 1 cut(s) | 137 |
| PagI | TCATGA | 1 cut(s) | 487 |
| PciSI | GCTCTTC | 2 cut(s) | 228, 348 |
| PdmI | GAANNNNTTC | 1 cut(s) | 342 |
| PfeI | GAWTC | 1 cut(s) | 257 |
| PkrI | GCNGC | 1 cut(s) | 754 |
| PleI | GAGTC | 1 cut(s) | 2 |
| PmaCI | CACGTG | 1 cut(s) | 615 |
| PmlI | CACGTG | 1 cut(s) | 615 |
| PpsI | GAGTC | 1 cut(s) | 2 |
| Ppu21I | YACGTR | 1 cut(s) | 615 |
| PpuMI | RGGWCCY | 1 cut(s) | 643 |
| PsiI | TTATAA | 1 cut(s) | 501 |
| Psp5II | RGGWCCY | 1 cut(s) | 643 |
| PspCI | CACGTG | 1 cut(s) | 615 |
| PspEI | GGTNACC | 1 cut(s) | 37 |
| PspN4I | GGNNCC | 3 cut(s) | 567, 610, 644 |
| PspPI | GGNCC | 3 cut(s) | 465, 566, 643 |
| PspPPI | RGGWCCY | 1 cut(s) | 643 |
| PstI | CTGCAG | 1 cut(s) | 602 |
| RseI | CAYNNNNRTG | 2 cut(s) | 443, 747 |
| SapI | GCTCTTC | 2 cut(s) | 228, 348 |
| SatI | GCNGC | 1 cut(s) | 753 |
| Sau3AI | GATC | 2 cut(s) | 103, 198 |
| Sau96I | GGNCC | 3 cut(s) | 465, 566, 643 |
| SchI | GAGTC | 1 cut(s) | 2 |
| ScrFI | CCNGG | 1 cut(s) | 101 |
| SduI | GDGCHC | 1 cut(s) | 744 |
| SfaNI | GCATC | 3 cut(s) | 144, 196, 739 |
| SfcI | CTRYAG | 4 cut(s) | 350, 417, 598, 711 |
| SinI | GGWCC | 2 cut(s) | 566, 643 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 443, 747 |
| SmlI | CTYRAG | 1 cut(s) | 138 |
| SmoI | CTYRAG | 1 cut(s) | 138 |
| SphI | GCATGC | 1 cut(s) | 137 |
| Sse9I | AATT | 3 cut(s) | 331, 457, 496 |
| SsiI | CCGC | 1 cut(s) | 577 |
| SspI | AATATT | 1 cut(s) | 75 |
| SspMI | CTAG | 1 cut(s) | 230 |
| StyD4I | CCNGG | 1 cut(s) | 99 |
| TaaI | ACNGT | 2 cut(s) | 32, 354 |
| TaiI | ACGT | 2 cut(s) | 562, 617 |
| TaqI | TCGA | 1 cut(s) | 197 |
| TasI | AATT | 3 cut(s) | 331, 457, 496 |
| TfiI | GAWTC | 1 cut(s) | 257 |
| TseFI | GTSAC | 1 cut(s) | 382 |
| TseI | GCWGC | 1 cut(s) | 752 |
| Tsp45I | GTSAC | 1 cut(s) | 382 |
| TspDTI | ATGAA | 3 cut(s) | 383, 476, 750 |
| VneI | GTGCAC | 1 cut(s) | 740 |
| VpaK11BI | GGWCC | 2 cut(s) | 566, 643 |
| XceI | RCATGY | 1 cut(s) | 137 |
| XmnI | GAANNNNTTC | 1 cut(s) | 342 |
| XspI | CTAG | 1 cut(s) | 230 |