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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 324, 369, 539, 584 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 432 |
| Acc65I | GGTACC | 1 cut(s) | 399 |
| AccB1I | GGYRCC | 2 cut(s) | 399, 719 |
| AccBSI | CCGCTC | 2 cut(s) | 397, 612 |
| AciI | CCGC | 6 cut(s) | 397, 445, 466, 612, 632, 743 |
| AclWI | GGATC | 2 cut(s) | 257, 808 |
| AcuI | CTGAAG | 1 cut(s) | 252 |
| AcvI | CACGTG | 4 cut(s) | 488, 506, 641, 659 |
| AcyI | GRCGYC | 1 cut(s) | 7 |
| AdeI | CACNNNGTG | 2 cut(s) | 491, 644 |
| AfaI | GTAC | 3 cut(s) | 229, 401, 893 |
| AfeI | AGCGCT | 1 cut(s) | 86 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 383, 384, 410, 454, 507, 598, 599, 660, 733 |
| AflIII | ACRYGT | 4 cut(s) | 485, 503, 638, 656 |
| AgsI | TTSAA | 6 cut(s) | 124, 160, 330, 545, 820, 949 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 160 |
| AjnI | CCWGG | 1 cut(s) | 453 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 7 cut(s) | 64, 74, 268, 290, 848, 855, 953 |
| AluI | AGCT | 7 cut(s) | 64, 74, 268, 290, 848, 855, 953 |
| Alw21I | GWGCWC | 1 cut(s) | 754 |
| Alw26I | GTCTC | 2 cut(s) | 168, 864 |
| Alw44I | GTGCAC | 1 cut(s) | 750 |
| AlwI | GGATC | 2 cut(s) | 257, 808 |
| Aor51HI | AGCGCT | 1 cut(s) | 86 |
| AoxI | GGCC | 2 cut(s) | 332, 547 |
| ApaLI | GTGCAC | 1 cut(s) | 750 |
| ApeKI | GCWGC | 1 cut(s) | 848 |
| Asp718I | GGTACC | 1 cut(s) | 399 |
| AspA2I | CCTAGG | 1 cut(s) | 731 |
| AspLEI | GCGC | 5 cut(s) | 87, 147, 390, 591, 605 |
| AspS9I | GGNCC | 3 cut(s) | 333, 434, 548 |
| AsuHPI | GGTGA | 1 cut(s) | 925 |
| AvaII | GGWCC | 1 cut(s) | 434 |
| AvrII | CCTAGG | 1 cut(s) | 731 |
| BaeGI | GKGCMC | 1 cut(s) | 754 |
| BanI | GGYRCC | 2 cut(s) | 399, 719 |
| BauI | CACGAG | 2 cut(s) | 253, 311 |
| BbrPI | CACGTG | 4 cut(s) | 488, 506, 641, 659 |
| Bbv12I | GWGCWC | 1 cut(s) | 754 |
| BbvI | GCAGC | 1 cut(s) | 835 |
| BccI | CCATC | 2 cut(s) | 689, 908 |
| BceAI | ACGGC | 1 cut(s) | 672 |
| BciT130I | CCWGG | 1 cut(s) | 455 |
| BciVI | GTATCC | 4 cut(s) | 475, 536, 628, 689 |
| BcoDI | GTCTC | 2 cut(s) | 168, 864 |
| BfaI | CTAG | 5 cut(s) | 77, 531, 684, 732, 845 |
| BfmI | CTRYAG | 2 cut(s) | 285, 856 |
| BfoI | RGCGCY | 1 cut(s) | 88 |
| BfuI | GTATCC | 4 cut(s) | 475, 536, 628, 689 |
| BisI | GCNGC | 1 cut(s) | 849 |
| BlnI | CCTAGG | 1 cut(s) | 731 |
| BlsI | GCNGC | 1 cut(s) | 850 |
| Bme1390I | CCNGG | 1 cut(s) | 455 |
| Bme18I | GGWCC | 1 cut(s) | 434 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 160 |
| BmgT120I | GGNCC | 3 cut(s) | 333, 434, 548 |
| BmiI | GGNNCC | 4 cut(s) | 260, 401, 435, 721 |
| BmrFI | CCNGG | 1 cut(s) | 455 |
| BmsI | GCATC | 2 cut(s) | 43, 964 |
| BsaAI | YACGTR | 4 cut(s) | 488, 506, 641, 659 |
| BsaBI | GATNNNNATC | 1 cut(s) | 927 |
| BsaHI | GRCGYC | 1 cut(s) | 7 |
| BsaJI | CCNNGG | 1 cut(s) | 731 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 502, 532, 655, 685, 712, 742 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 383, 384, 410, 454, 507, 598, 599, 660, 733 |
| Bse3DI | GCAATG | 2 cut(s) | 100, 784 |
| Bse8I | GATNNNNATC | 1 cut(s) | 927 |
| BseBI | CCWGG | 1 cut(s) | 455 |
| BseDI | CCNNGG | 1 cut(s) | 731 |
| BseGI | GGATG | 2 cut(s) | 58, 979 |
| BseJI | GATNNNNATC | 1 cut(s) | 927 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 383, 384, 410, 454, 507, 598, 599, 660, 733 |
| BseMI | GCAATG | 2 cut(s) | 100, 784 |
| BseMII | CTCAG | 2 cut(s) | 40, 282 |
| BseSI | GKGCMC | 1 cut(s) | 754 |
| BseXI | GCAGC | 1 cut(s) | 835 |
| BshFI | GGCC | 2 cut(s) | 334, 549 |
| BshNI | GGYRCC | 2 cut(s) | 399, 719 |
| BsiHKAI | GWGCWC | 1 cut(s) | 754 |
| BslFI | GGGAC | 2 cut(s) | 429, 438 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 383, 384, 410, 454, 507, 598, 599, 660, 733 |
| BsmAI | GTCTC | 2 cut(s) | 168, 864 |
| BsmFI | GGGAC | 2 cut(s) | 429, 438 |
| BsnI | GGCC | 2 cut(s) | 334, 549 |
| Bsp1286I | GDGCHC | 1 cut(s) | 754 |
| Bsp143I | GATC | 3 cut(s) | 45, 249, 800 |
| BspACI | CCGC | 6 cut(s) | 397, 445, 466, 612, 632, 743 |
| BspANI | GGCC | 2 cut(s) | 334, 549 |
| BspCNI | CTCAG | 2 cut(s) | 39, 283 |
| BspHI | TCATGA | 2 cut(s) | 355, 570 |
| BspLI | GGNNCC | 4 cut(s) | 260, 401, 435, 721 |
| BspPI | GGATC | 2 cut(s) | 257, 808 |
| BspQI | GCTCTTC | 1 cut(s) | 75 |
| BspT107I | GGYRCC | 2 cut(s) | 399, 719 |
| BsrBI | CCGCTC | 2 cut(s) | 397, 612 |
| BsrDI | GCAATG | 2 cut(s) | 100, 784 |
| BssECI | CCNNGG | 1 cut(s) | 731 |
| BssMI | GATC | 3 cut(s) | 45, 249, 800 |
| BssNI | GRCGYC | 1 cut(s) | 7 |
| BssSI | CACGAG | 2 cut(s) | 253, 311 |
| BssT1I | CCWWGG | 1 cut(s) | 731 |
| Bst2BI | CACGAG | 2 cut(s) | 253, 311 |
| Bst2UI | CCWGG | 1 cut(s) | 455 |
| Bst4CI | ACNGT | 1 cut(s) | 227 |
| Bst6I | CTCTTC | 1 cut(s) | 75 |
| BstACI | GRCGYC | 1 cut(s) | 7 |
| BstBAI | YACGTR | 4 cut(s) | 488, 506, 641, 659 |
| BstC8I | GCNNGC | 2 cut(s) | 743, 853 |
| BstDEI | CTNAG | 5 cut(s) | 26, 291, 345, 405, 560 |
| BstF5I | GGATG | 2 cut(s) | 58, 979 |
| BstH2I | RGCGCY | 1 cut(s) | 88 |
| BstHHI | GCGC | 5 cut(s) | 87, 147, 390, 591, 605 |
| BstKTI | GATC | 3 cut(s) | 48, 252, 803 |
| BstMAI | GTCTC | 2 cut(s) | 168, 864 |
| BstMBI | GATC | 3 cut(s) | 45, 249, 800 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 394, 609 |
| BstNI | CCWGG | 1 cut(s) | 455 |
| BstSCI | CCNGG | 1 cut(s) | 453 |
| BstSFI | CTRYAG | 2 cut(s) | 285, 856 |
| BstSLI | GKGCMC | 1 cut(s) | 754 |
| BstV1I | GCAGC | 1 cut(s) | 835 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 626 |
| BsuI | GTATCC | 4 cut(s) | 475, 536, 628, 689 |
| BsuRI | GGCC | 2 cut(s) | 334, 549 |
| BtsCI | GGATG | 2 cut(s) | 58, 979 |
| Cac8I | GCNNGC | 2 cut(s) | 743, 853 |
| CciI | TCATGA | 2 cut(s) | 355, 570 |
| CfoI | GCGC | 5 cut(s) | 87, 147, 390, 591, 605 |
| Cfr13I | GGNCC | 3 cut(s) | 333, 434, 548 |
| CseI | GACGC | 1 cut(s) | 15 |
| Csp6I | GTAC | 3 cut(s) | 228, 400, 892 |
| CviAII | CATG | 6 cut(s) | 299, 356, 419, 571, 874, 970 |
| CviQI | GTAC | 3 cut(s) | 228, 400, 892 |
| DdeI | CTNAG | 5 cut(s) | 26, 291, 345, 405, 560 |
| DpnI | GATC | 3 cut(s) | 47, 251, 802 |
| DpnII | GATC | 3 cut(s) | 45, 249, 800 |
| DraIII | CACNNNGTG | 2 cut(s) | 491, 644 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 432 |
| DriI | GACNNNNNGTC | 1 cut(s) | 160 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 432 |
| Eam1104I | CTCTTC | 1 cut(s) | 75 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 160 |
| EarI | CTCTTC | 1 cut(s) | 75 |
| Eco130I | CCWWGG | 1 cut(s) | 731 |
| Eco47I | GGWCC | 1 cut(s) | 434 |
| Eco47III | AGCGCT | 1 cut(s) | 86 |
| Eco57I | CTGAAG | 1 cut(s) | 252 |
| Eco72I | CACGTG | 4 cut(s) | 488, 506, 641, 659 |
| EcoRII | CCWGG | 1 cut(s) | 453 |
| EcoT14I | CCWWGG | 1 cut(s) | 731 |
| ErhI | CCWWGG | 1 cut(s) | 731 |
| FaeI | CATG | 6 cut(s) | 302, 359, 422, 574, 877, 973 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 879, 911 |
| FaqI | GGGAC | 2 cut(s) | 429, 438 |
| FatI | CATG | 6 cut(s) | 298, 355, 418, 570, 873, 969 |
| FauI | CCCGC | 1 cut(s) | 750 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 1 cut(s) | 849 |
| FokI | GGATG | 2 cut(s) | 65, 986 |
| Fsp4HI | GCNGC | 1 cut(s) | 849 |
| FspBI | CTAG | 5 cut(s) | 77, 531, 684, 732, 845 |
| GlaI | GCGC | 5 cut(s) | 86, 146, 389, 590, 604 |
| GluI | GCNGC | 1 cut(s) | 849 |
| HaeII | RGCGCY | 1 cut(s) | 88 |
| HaeIII | GGCC | 2 cut(s) | 334, 549 |
| HgaI | GACGC | 1 cut(s) | 15 |
| HhaI | GCGC | 5 cut(s) | 87, 147, 390, 591, 605 |
| Hin1I | GRCGYC | 1 cut(s) | 7 |
| Hin1II | CATG | 6 cut(s) | 302, 359, 422, 574, 877, 973 |
| Hin6I | GCGC | 5 cut(s) | 85, 145, 388, 589, 603 |
| HinP1I | GCGC | 5 cut(s) | 85, 145, 388, 589, 603 |
| HindIII | AAGCTT | 1 cut(s) | 266 |
| HinfI | GANTC | 1 cut(s) | 104 |
| HphI | GGTGA | 1 cut(s) | 925 |
| Hpy166II | GTNNAC | 2 cut(s) | 752, 892 |
| Hpy188I | TCNGA | 1 cut(s) | 29 |
| Hpy188III | TCNNGA | 4 cut(s) | 77, 253, 356, 571 |
| Hpy8I | GTNNAC | 2 cut(s) | 752, 892 |
| Hpy99I | CGWCG | 1 cut(s) | 9 |
| HpyAV | CCTTC | 3 cut(s) | 118, 199, 452 |
| HpyCH4III | ACNGT | 1 cut(s) | 227 |
| HpyCH4IV | ACGT | 6 cut(s) | 427, 487, 505, 640, 658, 748 |
| HpyCH4V | TGCA | 8 cut(s) | 56, 374, 752, 777, 851, 899, 967, 977 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 394, 609 |
| HpyF3I | CTNAG | 5 cut(s) | 26, 291, 345, 405, 560 |
| HpySE526I | ACGT | 6 cut(s) | 427, 487, 505, 640, 658, 748 |
| Hsp92I | GRCGYC | 1 cut(s) | 7 |
| Hsp92II | CATG | 6 cut(s) | 302, 359, 422, 574, 877, 973 |
| HspAI | GCGC | 5 cut(s) | 85, 145, 388, 589, 603 |
| KpnI | GGTACC | 1 cut(s) | 403 |
| Kzo9I | GATC | 3 cut(s) | 45, 249, 800 |
| LguI | GCTCTTC | 1 cut(s) | 75 |
| LmnI | GCTCC | 2 cut(s) | 394, 609 |
| LpnPI | CCDG | 5 cut(s) | 129, 228, 440, 467, 844 |
| Lsp1109I | GCAGC | 1 cut(s) | 835 |
| LweI | GCATC | 2 cut(s) | 43, 964 |
| MaeI | CTAG | 5 cut(s) | 77, 531, 684, 732, 845 |
| MaeII | ACGT | 6 cut(s) | 427, 487, 505, 640, 658, 748 |
| MalI | GATC | 3 cut(s) | 47, 251, 802 |
| MbiI | CCGCTC | 2 cut(s) | 397, 612 |
| MboI | GATC | 3 cut(s) | 45, 249, 800 |
| MboII | GAAGA | 5 cut(s) | 92, 914, 917, 920, 923 |
| MfeI | CAATTG | 1 cut(s) | 804 |
| MhlI | GDGCHC | 1 cut(s) | 754 |
| MluCI | AATT | 9 cut(s) | 168, 319, 325, 364, 534, 540, 579, 758, 804 |
| MseI | TTAA | 3 cut(s) | 129, 701, 761 |
| MslI | CAYNNNNRTG | 3 cut(s) | 311, 795, 972 |
| MspR9I | CCNGG | 1 cut(s) | 455 |
| MunI | CAATTG | 1 cut(s) | 804 |
| MvaI | CCWGG | 1 cut(s) | 455 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 394, 609 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 45, 249, 800 |
| NlaIII | CATG | 6 cut(s) | 302, 359, 422, 574, 877, 973 |
| NlaIV | GGNNCC | 4 cut(s) | 260, 401, 435, 721 |
| PagI | TCATGA | 2 cut(s) | 355, 570 |
| PciSI | GCTCTTC | 1 cut(s) | 75 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 745 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PkrI | GCNGC | 1 cut(s) | 850 |
| PmaCI | CACGTG | 4 cut(s) | 488, 506, 641, 659 |
| PmlI | CACGTG | 4 cut(s) | 488, 506, 641, 659 |
| Ppu21I | YACGTR | 4 cut(s) | 488, 506, 641, 659 |
| PsiI | TTATAA | 4 cut(s) | 324, 369, 539, 584 |
| Psp6I | CCWGG | 1 cut(s) | 453 |
| PspCI | CACGTG | 4 cut(s) | 488, 506, 641, 659 |
| PspGI | CCWGG | 1 cut(s) | 453 |
| PspN4I | GGNNCC | 4 cut(s) | 260, 401, 435, 721 |
| PspPI | GGNCC | 3 cut(s) | 333, 434, 548 |
| RsaI | GTAC | 3 cut(s) | 229, 401, 893 |
| RsaNI | GTAC | 3 cut(s) | 228, 400, 892 |
| RseI | CAYNNNNRTG | 3 cut(s) | 311, 795, 972 |
| SapI | GCTCTTC | 1 cut(s) | 75 |
| SaqAI | TTAA | 3 cut(s) | 129, 701, 761 |
| SatI | GCNGC | 1 cut(s) | 849 |
| Sau3AI | GATC | 3 cut(s) | 45, 249, 800 |
| Sau96I | GGNCC | 3 cut(s) | 333, 434, 548 |
| ScrFI | CCNGG | 1 cut(s) | 455 |
| SduI | GDGCHC | 1 cut(s) | 754 |
| SfaNI | GCATC | 2 cut(s) | 43, 964 |
| SfcI | CTRYAG | 2 cut(s) | 285, 856 |
| SinI | GGWCC | 1 cut(s) | 434 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 311, 795, 972 |
| Sse9I | AATT | 9 cut(s) | 168, 319, 325, 364, 534, 540, 579, 758, 804 |
| SsiI | CCGC | 6 cut(s) | 397, 445, 466, 612, 632, 743 |
| SspI | AATATT | 1 cut(s) | 277 |
| SspMI | CTAG | 5 cut(s) | 77, 531, 684, 732, 845 |
| StyD4I | CCNGG | 1 cut(s) | 453 |
| StyI | CCWWGG | 1 cut(s) | 731 |
| TaaI | ACNGT | 1 cut(s) | 227 |
| TaiI | ACGT | 6 cut(s) | 430, 490, 508, 643, 661, 751 |
| TaqI | TCGA | 1 cut(s) | 44 |
| TasI | AATT | 9 cut(s) | 168, 319, 325, 364, 534, 540, 579, 758, 804 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 3 cut(s) | 129, 701, 761 |
| Tru9I | TTAA | 3 cut(s) | 129, 701, 761 |
| TseI | GCWGC | 1 cut(s) | 848 |
| TspDTI | ATGAA | 3 cut(s) | 344, 559, 975 |
| TspGWI | ACGGA | 1 cut(s) | 262 |
| VneI | GTGCAC | 1 cut(s) | 750 |
| VpaK11BI | GGWCC | 1 cut(s) | 434 |
| XbaI | TCTAGA | 1 cut(s) | 76 |
| XmaJI | CCTAGG | 1 cut(s) | 731 |
| XspI | CTAG | 5 cut(s) | 77, 531, 684, 732, 845 |