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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 198, 243 |
| Acc36I | ACCTGC | 1 cut(s) | 282 |
| AccB1I | GGYRCC | 2 cut(s) | 368, 389 |
| AciI | CCGC | 3 cut(s) | 100, 289, 561 |
| AclWI | GGATC | 1 cut(s) | 465 |
| AcsI | RAATTY | 1 cut(s) | 304 |
| AcuI | CTGAAG | 1 cut(s) | 126 |
| AcvI | CACGTG | 2 cut(s) | 311, 329 |
| AcyI | GRCGYC | 1 cut(s) | 369 |
| AdeI | CACNNNGTG | 2 cut(s) | 314, 419 |
| AfaI | GTAC | 1 cut(s) | 476 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 257, 258, 330, 359, 403 |
| AflIII | ACRYGT | 1 cut(s) | 326 |
| AgsI | TTSAA | 2 cut(s) | 204, 532 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 23 |
| AjnI | CCWGG | 1 cut(s) | 352 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 99, 131 |
| AluBI | AGCT | 4 cut(s) | 40, 142, 164, 536 |
| AluI | AGCT | 4 cut(s) | 40, 142, 164, 536 |
| Alw21I | GWGCWC | 2 cut(s) | 424, 552 |
| Alw26I | GTCTC | 2 cut(s) | 227, 498 |
| Alw44I | GTGCAC | 2 cut(s) | 420, 548 |
| AlwI | GGATC | 1 cut(s) | 465 |
| AoxI | GGCC | 1 cut(s) | 206 |
| ApaLI | GTGCAC | 2 cut(s) | 420, 548 |
| ApoI | RAATTY | 1 cut(s) | 304 |
| AspA2I | CCTAGG | 1 cut(s) | 401 |
| AspLEI | GCGC | 2 cut(s) | 264, 371 |
| AspS9I | GGNCC | 1 cut(s) | 207 |
| AsuHPI | GGTGA | 1 cut(s) | 508 |
| AvrII | CCTAGG | 1 cut(s) | 401 |
| BaeGI | GKGCMC | 2 cut(s) | 424, 552 |
| BanI | GGYRCC | 2 cut(s) | 368, 389 |
| BauI | CACGAG | 2 cut(s) | 127, 185 |
| BbrPI | CACGTG | 2 cut(s) | 311, 329 |
| Bbv12I | GWGCWC | 2 cut(s) | 424, 552 |
| BccI | CCATC | 1 cut(s) | 519 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 430, 464 |
| BciT130I | CCWGG | 1 cut(s) | 354 |
| BciVI | GTATCC | 1 cut(s) | 359 |
| BcoDI | GTCTC | 2 cut(s) | 227, 498 |
| BfaI | CTAG | 1 cut(s) | 402 |
| BfmI | CTRYAG | 1 cut(s) | 159 |
| BfoI | RGCGCY | 1 cut(s) | 372 |
| BfuAI | ACCTGC | 1 cut(s) | 282 |
| BfuI | GTATCC | 1 cut(s) | 359 |
| BisI | GCNGC | 1 cut(s) | 561 |
| BlnI | CCTAGG | 1 cut(s) | 401 |
| BlsI | GCNGC | 1 cut(s) | 562 |
| Bme1390I | CCNGG | 1 cut(s) | 354 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 23 |
| BmgT120I | GGNCC | 1 cut(s) | 207 |
| BmiI | GGNNCC | 2 cut(s) | 370, 391 |
| BmrFI | CCNGG | 1 cut(s) | 354 |
| BmsI | GCATC | 1 cut(s) | 547 |
| Bsa29I | ATCGAT | 1 cut(s) | 450 |
| BsaAI | YACGTR | 2 cut(s) | 311, 329 |
| BsaBI | GATNNNNATC | 1 cut(s) | 456 |
| BsaHI | GRCGYC | 1 cut(s) | 369 |
| BsaJI | CCNNGG | 3 cut(s) | 352, 372, 401 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 325, 355, 429, 459 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 257, 258, 330, 359, 403 |
| Bse3DI | GCAATG | 1 cut(s) | 325 |
| Bse8I | GATNNNNATC | 1 cut(s) | 456 |
| BseBI | CCWGG | 1 cut(s) | 354 |
| BseCI | ATCGAT | 1 cut(s) | 450 |
| BseDI | CCNNGG | 3 cut(s) | 352, 372, 401 |
| BseGI | GGATG | 2 cut(s) | 507, 562 |
| BseJI | GATNNNNATC | 1 cut(s) | 456 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 257, 258, 330, 359, 403 |
| BseMI | GCAATG | 1 cut(s) | 325 |
| BseMII | CTCAG | 2 cut(s) | 156, 440 |
| BseSI | GKGCMC | 2 cut(s) | 424, 552 |
| BshFI | GGCC | 1 cut(s) | 208 |
| BshNI | GGYRCC | 2 cut(s) | 368, 389 |
| BshVI | ATCGAT | 1 cut(s) | 450 |
| BsiHKAI | GWGCWC | 2 cut(s) | 424, 552 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 257, 258, 330, 359, 403 |
| BsmAI | GTCTC | 2 cut(s) | 227, 498 |
| BsmBI | CGTCTC | 1 cut(s) | 227 |
| BsnI | GGCC | 1 cut(s) | 208 |
| Bsp1286I | GDGCHC | 2 cut(s) | 424, 552 |
| Bsp143I | GATC | 2 cut(s) | 447, 457 |
| Bsp19I | CCATGG | 1 cut(s) | 372 |
| BspACI | CCGC | 3 cut(s) | 100, 289, 561 |
| BspANI | GGCC | 1 cut(s) | 208 |
| BspCNI | CTCAG | 2 cut(s) | 157, 439 |
| BspDI | ATCGAT | 1 cut(s) | 450 |
| BspHI | TCATGA | 1 cut(s) | 229 |
| BspLI | GGNNCC | 2 cut(s) | 370, 391 |
| BspMI | ACCTGC | 1 cut(s) | 282 |
| BspPI | GGATC | 1 cut(s) | 465 |
| BspT107I | GGYRCC | 2 cut(s) | 368, 389 |
| BsrDI | GCAATG | 1 cut(s) | 325 |
| BssECI | CCNNGG | 3 cut(s) | 352, 372, 401 |
| BssMI | GATC | 2 cut(s) | 447, 457 |
| BssNI | GRCGYC | 1 cut(s) | 369 |
| BssSI | CACGAG | 2 cut(s) | 127, 185 |
| BssT1I | CCWWGG | 2 cut(s) | 372, 401 |
| Bst2BI | CACGAG | 2 cut(s) | 127, 185 |
| Bst2UI | CCWGG | 1 cut(s) | 354 |
| BstACI | GRCGYC | 1 cut(s) | 369 |
| BstBAI | YACGTR | 2 cut(s) | 311, 329 |
| BstDEI | CTNAG | 3 cut(s) | 165, 219, 426 |
| BstDSI | CCRYGG | 1 cut(s) | 372 |
| BstF5I | GGATG | 2 cut(s) | 507, 562 |
| BstH2I | RGCGCY | 1 cut(s) | 372 |
| BstHHI | GCGC | 2 cut(s) | 264, 371 |
| BstKTI | GATC | 2 cut(s) | 450, 460 |
| BstMAI | GTCTC | 2 cut(s) | 227, 498 |
| BstMBI | GATC | 2 cut(s) | 447, 457 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 268 |
| BstNI | CCWGG | 1 cut(s) | 354 |
| BstSCI | CCNGG | 1 cut(s) | 352 |
| BstSFI | CTRYAG | 1 cut(s) | 159 |
| BstSLI | GKGCMC | 2 cut(s) | 424, 552 |
| Bsu15I | ATCGAT | 1 cut(s) | 450 |
| BsuI | GTATCC | 1 cut(s) | 359 |
| BsuRI | GGCC | 1 cut(s) | 208 |
| BsuTUI | ATCGAT | 1 cut(s) | 450 |
| BtgI | CCRYGG | 1 cut(s) | 372 |
| BtsCI | GGATG | 2 cut(s) | 507, 562 |
| BtsIMutI | CAGTG | 1 cut(s) | 102 |
| BveI | ACCTGC | 1 cut(s) | 282 |
| CciI | TCATGA | 1 cut(s) | 229 |
| CfoI | GCGC | 2 cut(s) | 264, 371 |
| Cfr13I | GGNCC | 1 cut(s) | 207 |
| ClaI | ATCGAT | 1 cut(s) | 450 |
| Csp6I | GTAC | 1 cut(s) | 475 |
| CviAII | CATG | 3 cut(s) | 173, 230, 373 |
| CviJI | RGCY | 6 cut(s) | 40, 77, 142, 164, 208, 536 |
| CviKI_1 | RGCY | 6 cut(s) | 40, 77, 142, 164, 208, 536 |
| CviQI | GTAC | 1 cut(s) | 475 |
| DdeI | CTNAG | 3 cut(s) | 165, 219, 426 |
| DinI | GGCGCC | 1 cut(s) | 370 |
| DpnI | GATC | 2 cut(s) | 449, 459 |
| DpnII | GATC | 2 cut(s) | 447, 457 |
| DraIII | CACNNNGTG | 2 cut(s) | 314, 419 |
| DriI | GACNNNNNGTC | 1 cut(s) | 23 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 2 cut(s) | 372, 401 |
| Eco57I | CTGAAG | 1 cut(s) | 126 |
| Eco72I | CACGTG | 2 cut(s) | 311, 329 |
| EcoRI | GAATTC | 1 cut(s) | 304 |
| EcoRII | CCWGG | 1 cut(s) | 352 |
| EcoT14I | CCWWGG | 2 cut(s) | 372, 401 |
| EgeI | GGCGCC | 1 cut(s) | 370 |
| EheI | GGCGCC | 1 cut(s) | 370 |
| ErhI | CCWWGG | 2 cut(s) | 372, 401 |
| Esp3I | CGTCTC | 1 cut(s) | 227 |
| FaeI | CATG | 3 cut(s) | 176, 233, 376 |
| FaiI | YATR | 8 cut(s) | 155, 174, 182, 198, 231, 243, 374, 521 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 462, 494 |
| FatI | CATG | 3 cut(s) | 172, 229, 372 |
| Fnu4HI | GCNGC | 1 cut(s) | 561 |
| FokI | GGATG | 2 cut(s) | 494, 569 |
| Fsp4HI | GCNGC | 1 cut(s) | 561 |
| FspBI | CTAG | 1 cut(s) | 402 |
| GlaI | GCGC | 2 cut(s) | 263, 370 |
| GluI | GCNGC | 1 cut(s) | 561 |
| HaeII | RGCGCY | 1 cut(s) | 372 |
| HaeIII | GGCC | 1 cut(s) | 208 |
| HhaI | GCGC | 2 cut(s) | 264, 371 |
| Hin1I | GRCGYC | 1 cut(s) | 369 |
| Hin1II | CATG | 3 cut(s) | 176, 233, 376 |
| Hin6I | GCGC | 2 cut(s) | 262, 369 |
| HinP1I | GCGC | 2 cut(s) | 262, 369 |
| HinfI | GANTC | 1 cut(s) | 123 |
| HphI | GGTGA | 1 cut(s) | 508 |
| Hpy166II | GTNNAC | 4 cut(s) | 17, 422, 475, 550 |
| Hpy188III | TCNNGA | 4 cut(s) | 127, 187, 230, 461 |
| Hpy8I | GTNNAC | 4 cut(s) | 17, 422, 475, 550 |
| HpyAV | CCTTC | 2 cut(s) | 73, 275 |
| HpyCH4IV | ACGT | 3 cut(s) | 310, 328, 418 |
| HpyCH4V | TGCA | 4 cut(s) | 248, 422, 482, 550 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 268 |
| HpyF3I | CTNAG | 3 cut(s) | 165, 219, 426 |
| HpySE526I | ACGT | 3 cut(s) | 310, 328, 418 |
| Hsp92I | GRCGYC | 1 cut(s) | 369 |
| Hsp92II | CATG | 3 cut(s) | 176, 233, 376 |
| HspAI | GCGC | 2 cut(s) | 262, 369 |
| KasI | GGCGCC | 1 cut(s) | 368 |
| Kzo9I | GATC | 2 cut(s) | 447, 457 |
| LmnI | GCTCC | 1 cut(s) | 268 |
| LpnPI | CCDG | 4 cut(s) | 36, 277, 339, 366 |
| LweI | GCATC | 1 cut(s) | 547 |
| MaeI | CTAG | 1 cut(s) | 402 |
| MaeII | ACGT | 3 cut(s) | 310, 328, 418 |
| MaeIII | GTNAC | 1 cut(s) | 25 |
| MalI | GATC | 2 cut(s) | 449, 459 |
| MboI | GATC | 2 cut(s) | 447, 457 |
| MboII | GAAGA | 4 cut(s) | 202, 497, 500, 503 |
| MhlI | GDGCHC | 2 cut(s) | 424, 552 |
| MluCI | AATT | 5 cut(s) | 42, 193, 199, 238, 304 |
| Mly113I | GGCGCC | 1 cut(s) | 369 |
| MmeI | TCCRAC | 1 cut(s) | 97 |
| MnlI | CCTC | 7 cut(s) | 123, 251, 329, 408, 431, 435, 517 |
| MseI | TTAA | 1 cut(s) | 431 |
| MslI | CAYNNNNRTG | 2 cut(s) | 185, 555 |
| MspR9I | CCNGG | 1 cut(s) | 354 |
| MvaI | CCWGG | 1 cut(s) | 354 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 268 |
| NarI | GGCGCC | 1 cut(s) | 369 |
| NcoI | CCATGG | 1 cut(s) | 372 |
| NdeII | GATC | 2 cut(s) | 447, 457 |
| NlaIII | CATG | 3 cut(s) | 176, 233, 376 |
| NlaIV | GGNNCC | 2 cut(s) | 370, 391 |
| NmuCI | GTSAC | 1 cut(s) | 25 |
| PagI | TCATGA | 1 cut(s) | 229 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 415 |
| PfeI | GAWTC | 1 cut(s) | 123 |
| PkrI | GCNGC | 1 cut(s) | 562 |
| PluTI | GGCGCC | 1 cut(s) | 372 |
| PmaCI | CACGTG | 2 cut(s) | 311, 329 |
| PmlI | CACGTG | 2 cut(s) | 311, 329 |
| Ppu21I | YACGTR | 2 cut(s) | 311, 329 |
| PsiI | TTATAA | 2 cut(s) | 198, 243 |
| Psp6I | CCWGG | 1 cut(s) | 352 |
| PspCI | CACGTG | 2 cut(s) | 311, 329 |
| PspGI | CCWGG | 1 cut(s) | 352 |
| PspN4I | GGNNCC | 2 cut(s) | 370, 391 |
| PspPI | GGNCC | 1 cut(s) | 207 |
| RsaI | GTAC | 1 cut(s) | 476 |
| RsaNI | GTAC | 1 cut(s) | 475 |
| RseI | CAYNNNNRTG | 2 cut(s) | 185, 555 |
| SaqAI | TTAA | 1 cut(s) | 431 |
| SatI | GCNGC | 1 cut(s) | 561 |
| Sau3AI | GATC | 2 cut(s) | 447, 457 |
| Sau96I | GGNCC | 1 cut(s) | 207 |
| ScrFI | CCNGG | 1 cut(s) | 354 |
| SduI | GDGCHC | 2 cut(s) | 424, 552 |
| SfaNI | GCATC | 1 cut(s) | 547 |
| SfcI | CTRYAG | 1 cut(s) | 159 |
| SfoI | GGCGCC | 1 cut(s) | 370 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 185, 555 |
| Sse9I | AATT | 5 cut(s) | 42, 193, 199, 238, 304 |
| SsiI | CCGC | 3 cut(s) | 100, 289, 561 |
| SspDI | GGCGCC | 1 cut(s) | 368 |
| SspMI | CTAG | 1 cut(s) | 402 |
| StyD4I | CCNGG | 1 cut(s) | 352 |
| StyI | CCWWGG | 2 cut(s) | 372, 401 |
| TaiI | ACGT | 3 cut(s) | 313, 331, 421 |
| TaqI | TCGA | 1 cut(s) | 450 |
| TasI | AATT | 5 cut(s) | 42, 193, 199, 238, 304 |
| TauI | GCSGC | 1 cut(s) | 563 |
| TfiI | GAWTC | 1 cut(s) | 123 |
| Tru1I | TTAA | 1 cut(s) | 431 |
| Tru9I | TTAA | 1 cut(s) | 431 |
| TscAI | CASTG | 1 cut(s) | 109 |
| TseFI | GTSAC | 1 cut(s) | 25 |
| Tsp45I | GTSAC | 1 cut(s) | 25 |
| TspDTI | ATGAA | 3 cut(s) | 125, 218, 558 |
| TspRI | CASTG | 1 cut(s) | 109 |
| VneI | GTGCAC | 2 cut(s) | 420, 548 |
| XapI | RAATTY | 1 cut(s) | 304 |
| XmaJI | CCTAGG | 1 cut(s) | 401 |
| XspI | CTAG | 1 cut(s) | 402 |