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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 455 |
| AccI | GTMKAC | 1 cut(s) | 748 |
| AciI | CCGC | 2 cut(s) | 247, 770 |
| AclI | AACGTT | 1 cut(s) | 198 |
| AcoI | YGGCCR | 1 cut(s) | 715 |
| AcsI | RAATTY | 1 cut(s) | 9 |
| AcyI | GRCGYC | 1 cut(s) | 729 |
| AfaI | GTAC | 1 cut(s) | 270 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 566, 637, 769 |
| AluBI | AGCT | 3 cut(s) | 62, 86, 448 |
| AluI | AGCT | 3 cut(s) | 62, 86, 448 |
| Alw21I | GWGCWC | 2 cut(s) | 48, 667 |
| Alw26I | GTCTC | 1 cut(s) | 382 |
| Alw44I | GTGCAC | 1 cut(s) | 663 |
| AoxI | GGCC | 2 cut(s) | 715, 829 |
| ApaLI | GTGCAC | 1 cut(s) | 663 |
| ApeKI | GCWGC | 2 cut(s) | 62, 184 |
| ApoI | RAATTY | 1 cut(s) | 9 |
| AspS9I | GGNCC | 2 cut(s) | 154, 617 |
| AsuHPI | GGTGA | 2 cut(s) | 620, 737 |
| AvaII | GGWCC | 2 cut(s) | 154, 617 |
| BaeGI | GKGCMC | 1 cut(s) | 667 |
| BanI | GGYRCC | 1 cut(s) | 455 |
| BbsI | GAAGAC | 1 cut(s) | 800 |
| Bbv12I | GWGCWC | 2 cut(s) | 48, 667 |
| BbvI | GCAGC | 2 cut(s) | 49, 196 |
| BccI | CCATC | 4 cut(s) | 29, 228, 304, 813 |
| BclI | TGATCA | 1 cut(s) | 348 |
| BcoDI | GTCTC | 1 cut(s) | 382 |
| BfaI | CTAG | 1 cut(s) | 159 |
| BfmI | CTRYAG | 1 cut(s) | 547 |
| BisI | GCNGC | 3 cut(s) | 63, 185, 771 |
| BlsI | GCNGC | 3 cut(s) | 64, 186, 772 |
| Bme18I | GGWCC | 2 cut(s) | 154, 617 |
| BmgT120I | GGNCC | 2 cut(s) | 154, 617 |
| BmiI | GGNNCC | 5 cut(s) | 156, 457, 523, 671, 786 |
| BoxI | GACNNNNGTC | 1 cut(s) | 744 |
| BpiI | GAAGAC | 1 cut(s) | 800 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 569, 601 |
| BpuEI | CTTGAG | 2 cut(s) | 200, 557 |
| BsaBI | GATNNNNATC | 1 cut(s) | 347 |
| BsaHI | GRCGYC | 1 cut(s) | 729 |
| BsaJI | CCNNGG | 4 cut(s) | 516, 673, 718, 735 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 566, 637, 769 |
| Bse8I | GATNNNNATC | 1 cut(s) | 347 |
| BseDI | CCNNGG | 4 cut(s) | 516, 673, 718, 735 |
| BseGI | GGATG | 2 cut(s) | 21, 614 |
| BseJI | GATNNNNATC | 1 cut(s) | 347 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 566, 637, 769 |
| BseSI | GKGCMC | 1 cut(s) | 667 |
| BseXI | GCAGC | 2 cut(s) | 49, 196 |
| BsgI | GTGCAG | 1 cut(s) | 366 |
| BshFI | GGCC | 2 cut(s) | 717, 831 |
| BshNI | GGYRCC | 1 cut(s) | 455 |
| BsiHKAI | GWGCWC | 2 cut(s) | 48, 667 |
| BsiSI | CCGG | 1 cut(s) | 714 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 566, 637, 769 |
| BsmAI | GTCTC | 1 cut(s) | 382 |
| BsmBI | CGTCTC | 1 cut(s) | 382 |
| BsmI | GAATGC | 1 cut(s) | 424 |
| BsnI | GGCC | 2 cut(s) | 717, 831 |
| Bsp1286I | GDGCHC | 2 cut(s) | 48, 667 |
| Bsp143I | GATC | 2 cut(s) | 348, 776 |
| Bsp19I | CCATGG | 1 cut(s) | 718 |
| BspACI | CCGC | 2 cut(s) | 247, 770 |
| BspANI | GGCC | 2 cut(s) | 717, 831 |
| BspHI | TCATGA | 2 cut(s) | 102, 442 |
| BspLI | GGNNCC | 5 cut(s) | 156, 457, 523, 671, 786 |
| BspT107I | GGYRCC | 1 cut(s) | 455 |
| BssECI | CCNNGG | 4 cut(s) | 516, 673, 718, 735 |
| BssMI | GATC | 2 cut(s) | 348, 776 |
| BssNI | GRCGYC | 1 cut(s) | 729 |
| BssT1I | CCWWGG | 3 cut(s) | 516, 718, 735 |
| Bst4CI | ACNGT | 2 cut(s) | 52, 674 |
| Bst6I | CTCTTC | 1 cut(s) | 686 |
| BstACI | GRCGYC | 1 cut(s) | 729 |
| BstC8I | GCNNGC | 2 cut(s) | 60, 663 |
| BstDEI | CTNAG | 2 cut(s) | 396, 588 |
| BstDSI | CCRYGG | 2 cut(s) | 673, 718 |
| BstF5I | GGATG | 2 cut(s) | 21, 614 |
| BstKTI | GATC | 2 cut(s) | 351, 779 |
| BstMAI | GTCTC | 1 cut(s) | 382 |
| BstMBI | GATC | 2 cut(s) | 348, 776 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 83 |
| BstNSI | RCATGY | 1 cut(s) | 841 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 744 |
| BstSFI | CTRYAG | 1 cut(s) | 547 |
| BstSLI | GKGCMC | 1 cut(s) | 667 |
| BstV1I | GCAGC | 2 cut(s) | 49, 196 |
| BstV2I | GAAGAC | 1 cut(s) | 800 |
| BsuRI | GGCC | 2 cut(s) | 717, 831 |
| BtgI | CCRYGG | 2 cut(s) | 673, 718 |
| BtsCI | GGATG | 2 cut(s) | 21, 614 |
| BtsIMutI | CAGTG | 3 cut(s) | 48, 333, 383 |
| Cac8I | GCNNGC | 2 cut(s) | 60, 663 |
| CciI | TCATGA | 2 cut(s) | 102, 442 |
| Cfr13I | GGNCC | 2 cut(s) | 154, 617 |
| CseI | GACGC | 2 cut(s) | 131, 737 |
| Csp6I | GTAC | 1 cut(s) | 269 |
| CviAII | CATG | 6 cut(s) | 103, 115, 443, 460, 719, 838 |
| CviQI | GTAC | 1 cut(s) | 269 |
| DdeI | CTNAG | 2 cut(s) | 396, 588 |
| DpnI | GATC | 2 cut(s) | 350, 778 |
| DpnII | GATC | 2 cut(s) | 348, 776 |
| EaeI | YGGCCR | 1 cut(s) | 715 |
| Eam1104I | CTCTTC | 1 cut(s) | 686 |
| EarI | CTCTTC | 1 cut(s) | 686 |
| Eco130I | CCWWGG | 3 cut(s) | 516, 718, 735 |
| Eco47I | GGWCC | 2 cut(s) | 154, 617 |
| EcoO109I | RGGNCCY | 1 cut(s) | 154 |
| EcoRI | GAATTC | 1 cut(s) | 9 |
| EcoT14I | CCWWGG | 3 cut(s) | 516, 718, 735 |
| ErhI | CCWWGG | 3 cut(s) | 516, 718, 735 |
| Esp3I | CGTCTC | 1 cut(s) | 382 |
| FaeI | CATG | 6 cut(s) | 106, 118, 446, 463, 722, 841 |
| FatI | CATG | 6 cut(s) | 102, 114, 442, 459, 718, 837 |
| FbaI | TGATCA | 1 cut(s) | 348 |
| FblI | GTMKAC | 1 cut(s) | 748 |
| Fnu4HI | GCNGC | 3 cut(s) | 63, 185, 771 |
| FokI | GGATG | 2 cut(s) | 8, 621 |
| Fsp4HI | GCNGC | 3 cut(s) | 63, 185, 771 |
| FspBI | CTAG | 1 cut(s) | 159 |
| GluI | GCNGC | 3 cut(s) | 63, 185, 771 |
| HaeIII | GGCC | 2 cut(s) | 717, 831 |
| HapII | CCGG | 1 cut(s) | 714 |
| HgaI | GACGC | 2 cut(s) | 131, 737 |
| Hin1I | GRCGYC | 1 cut(s) | 729 |
| Hin1II | CATG | 6 cut(s) | 106, 118, 446, 463, 722, 841 |
| HincII | GTYRAC | 1 cut(s) | 749 |
| HindII | GTYRAC | 1 cut(s) | 749 |
| HinfI | GANTC | 4 cut(s) | 206, 257, 539, 570 |
| HpaII | CCGG | 1 cut(s) | 714 |
| HphI | GGTGA | 2 cut(s) | 620, 737 |
| Hpy166II | GTNNAC | 2 cut(s) | 665, 749 |
| Hpy188I | TCNGA | 2 cut(s) | 39, 408 |
| Hpy188III | TCNNGA | 7 cut(s) | 14, 103, 203, 218, 352, 443, 536 |
| Hpy8I | GTNNAC | 2 cut(s) | 665, 749 |
| HpyAV | CCTTC | 2 cut(s) | 379, 635 |
| HpyCH4III | ACNGT | 2 cut(s) | 52, 674 |
| HpyCH4IV | ACGT | 3 cut(s) | 42, 198, 427 |
| HpyCH4V | TGCA | 3 cut(s) | 383, 422, 665 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 83 |
| HpyF3I | CTNAG | 2 cut(s) | 396, 588 |
| HpySE526I | ACGT | 3 cut(s) | 42, 198, 427 |
| Hsp92I | GRCGYC | 1 cut(s) | 729 |
| Hsp92II | CATG | 6 cut(s) | 106, 118, 446, 463, 722, 841 |
| Ksp22I | TGATCA | 1 cut(s) | 348 |
| Kzo9I | GATC | 2 cut(s) | 348, 776 |
| LmnI | GCTCC | 3 cut(s) | 74, 577, 784 |
| LpnPI | CCDG | 5 cut(s) | 231, 408, 549, 727, 801 |
| Lsp1109I | GCAGC | 2 cut(s) | 49, 196 |
| MaeI | CTAG | 1 cut(s) | 159 |
| MaeII | ACGT | 3 cut(s) | 42, 198, 427 |
| MaeIII | GTNAC | 2 cut(s) | 203, 725 |
| MalI | GATC | 2 cut(s) | 350, 778 |
| MboI | GATC | 2 cut(s) | 348, 776 |
| MboII | GAAGA | 3 cut(s) | 508, 703, 800 |
| MhlI | GDGCHC | 2 cut(s) | 48, 667 |
| MluCI | AATT | 5 cut(s) | 9, 96, 400, 601, 683 |
| MlyI | GAGTC | 3 cut(s) | 200, 548, 564 |
| MnlI | CCTC | 9 cut(s) | 254, 302, 383, 560, 631, 651, 671, 695, 721 |
| MseI | TTAA | 1 cut(s) | 144 |
| MslI | CAYNNNNRTG | 3 cut(s) | 117, 723, 798 |
| MspI | CCGG | 1 cut(s) | 714 |
| Mva1269I | GAATGC | 1 cut(s) | 424 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 83 |
| NcoI | CCATGG | 1 cut(s) | 718 |
| NdeII | GATC | 2 cut(s) | 348, 776 |
| NlaIII | CATG | 6 cut(s) | 106, 118, 446, 463, 722, 841 |
| NlaIV | GGNNCC | 5 cut(s) | 156, 457, 523, 671, 786 |
| NmuCI | GTSAC | 2 cut(s) | 203, 725 |
| NspI | RCATGY | 1 cut(s) | 841 |
| PagI | TCATGA | 2 cut(s) | 102, 442 |
| PctI | GAATGC | 1 cut(s) | 424 |
| PfeI | GAWTC | 1 cut(s) | 257 |
| PkrI | GCNGC | 3 cut(s) | 64, 186, 772 |
| PleI | GAGTC | 3 cut(s) | 200, 547, 564 |
| PpsI | GAGTC | 3 cut(s) | 200, 547, 564 |
| PpuMI | RGGWCCY | 1 cut(s) | 154 |
| PshAI | GACNNNNGTC | 1 cut(s) | 744 |
| Psp1406I | AACGTT | 1 cut(s) | 198 |
| Psp5II | RGGWCCY | 1 cut(s) | 154 |
| PspN4I | GGNNCC | 5 cut(s) | 156, 457, 523, 671, 786 |
| PspPI | GGNCC | 2 cut(s) | 154, 617 |
| PspPPI | RGGWCCY | 1 cut(s) | 154 |
| RsaI | GTAC | 1 cut(s) | 270 |
| RsaNI | GTAC | 1 cut(s) | 269 |
| RseI | CAYNNNNRTG | 3 cut(s) | 117, 723, 798 |
| SalI | GTCGAC | 1 cut(s) | 747 |
| SaqAI | TTAA | 1 cut(s) | 144 |
| SatI | GCNGC | 3 cut(s) | 63, 185, 771 |
| Sau3AI | GATC | 2 cut(s) | 348, 776 |
| Sau96I | GGNCC | 2 cut(s) | 154, 617 |
| SchI | GAGTC | 3 cut(s) | 200, 548, 564 |
| SduI | GDGCHC | 2 cut(s) | 48, 667 |
| SfcI | CTRYAG | 1 cut(s) | 547 |
| SinI | GGWCC | 2 cut(s) | 154, 617 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 117, 723, 798 |
| SmlI | CTYRAG | 2 cut(s) | 179, 572 |
| SmoI | CTYRAG | 2 cut(s) | 179, 572 |
| Sse9I | AATT | 5 cut(s) | 9, 96, 400, 601, 683 |
| SsiI | CCGC | 2 cut(s) | 247, 770 |
| SspMI | CTAG | 1 cut(s) | 159 |
| StyI | CCWWGG | 3 cut(s) | 516, 718, 735 |
| TaaI | ACNGT | 2 cut(s) | 52, 674 |
| TaiI | ACGT | 3 cut(s) | 45, 201, 430 |
| TaqI | TCGA | 2 cut(s) | 748, 775 |
| TasI | AATT | 5 cut(s) | 9, 96, 400, 601, 683 |
| TatI | WGTACW | 1 cut(s) | 268 |
| TauI | GCSGC | 1 cut(s) | 773 |
| TfiI | GAWTC | 1 cut(s) | 257 |
| Tru1I | TTAA | 1 cut(s) | 144 |
| Tru9I | TTAA | 1 cut(s) | 144 |
| TscAI | CASTG | 3 cut(s) | 55, 340, 390 |
| TseFI | GTSAC | 2 cut(s) | 203, 725 |
| TseI | GCWGC | 2 cut(s) | 62, 184 |
| Tsp45I | GTSAC | 2 cut(s) | 203, 725 |
| TspDTI | ATGAA | 4 cut(s) | 131, 162, 431, 476 |
| TspGWI | ACGGA | 2 cut(s) | 284, 682 |
| TspRI | CASTG | 3 cut(s) | 55, 340, 390 |
| VneI | GTGCAC | 1 cut(s) | 663 |
| VpaK11BI | GGWCC | 2 cut(s) | 154, 617 |
| XapI | RAATTY | 1 cut(s) | 9 |
| XceI | RCATGY | 1 cut(s) | 841 |
| XmiI | GTMKAC | 1 cut(s) | 748 |
| XspI | CTAG | 1 cut(s) | 159 |