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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 198, 243 |
| Acc36I | ACCTGC | 1 cut(s) | 333 |
| AccB1I | GGYRCC | 1 cut(s) | 425 |
| AccBSI | CCGCTC | 1 cut(s) | 271 |
| AccII | CGCG | 1 cut(s) | 128 |
| AciI | CCGC | 2 cut(s) | 100, 271 |
| AclWI | GGATC | 1 cut(s) | 131 |
| AcvI | CACGTG | 2 cut(s) | 362, 380 |
| AcyI | GRCGYC | 1 cut(s) | 426 |
| AdeI | CACNNNGTG | 2 cut(s) | 365, 455 |
| AfaI | GTAC | 1 cut(s) | 524 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 258, 328, 381, 410, 439 |
| AflIII | ACRYGT | 3 cut(s) | 22, 359, 377 |
| AgsI | TTSAA | 4 cut(s) | 107, 204, 580, 587 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 23 |
| AjnI | CCWGG | 1 cut(s) | 403 |
| AluBI | AGCT | 3 cut(s) | 40, 142, 164 |
| AluI | AGCT | 3 cut(s) | 40, 142, 164 |
| Alw21I | GWGCWC | 2 cut(s) | 460, 600 |
| Alw44I | GTGCAC | 2 cut(s) | 456, 596 |
| AlwI | GGATC | 1 cut(s) | 131 |
| ApaLI | GTGCAC | 2 cut(s) | 456, 596 |
| ApeKI | GCWGC | 1 cut(s) | 608 |
| AspA2I | CCTAGG | 1 cut(s) | 437 |
| AspLEI | GCGC | 2 cut(s) | 264, 428 |
| AspS9I | GGNCC | 2 cut(s) | 308, 502 |
| AsuHPI | GGTGA | 1 cut(s) | 556 |
| AvaII | GGWCC | 2 cut(s) | 308, 502 |
| AvrII | CCTAGG | 1 cut(s) | 437 |
| AxyI | CCTNAGG | 1 cut(s) | 506 |
| BaeGI | GKGCMC | 2 cut(s) | 460, 600 |
| BanI | GGYRCC | 1 cut(s) | 425 |
| BauI | CACGAG | 1 cut(s) | 185 |
| BbrPI | CACGTG | 2 cut(s) | 362, 380 |
| Bbv12I | GWGCWC | 2 cut(s) | 460, 600 |
| BbvI | GCAGC | 1 cut(s) | 595 |
| BccI | CCATC | 1 cut(s) | 539 |
| BceAI | ACGGC | 1 cut(s) | 275 |
| BciT130I | CCWGG | 1 cut(s) | 405 |
| BciVI | GTATCC | 1 cut(s) | 410 |
| BfaI | CTAG | 1 cut(s) | 438 |
| BfmI | CTRYAG | 2 cut(s) | 159, 609 |
| BfoI | RGCGCY | 1 cut(s) | 429 |
| BfuAI | ACCTGC | 1 cut(s) | 333 |
| BfuI | GTATCC | 1 cut(s) | 410 |
| BisI | GCNGC | 1 cut(s) | 609 |
| BlnI | CCTAGG | 1 cut(s) | 437 |
| BlsI | GCNGC | 1 cut(s) | 610 |
| Bme1390I | CCNGG | 1 cut(s) | 405 |
| Bme18I | GGWCC | 2 cut(s) | 308, 502 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 23 |
| BmgT120I | GGNCC | 2 cut(s) | 308, 502 |
| BmiI | GGNNCC | 4 cut(s) | 275, 309, 427, 503 |
| BmrFI | CCNGG | 1 cut(s) | 405 |
| BmsI | GCATC | 1 cut(s) | 595 |
| BsaAI | YACGTR | 2 cut(s) | 362, 380 |
| BsaBI | GATNNNNATC | 1 cut(s) | 558 |
| BsaHI | GRCGYC | 1 cut(s) | 426 |
| BsaJI | CCNNGG | 2 cut(s) | 403, 437 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 376, 406 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 258, 328, 381, 410, 439 |
| Bse21I | CCTNAGG | 1 cut(s) | 506 |
| Bse3DI | GCAATG | 1 cut(s) | 376 |
| Bse8I | GATNNNNATC | 1 cut(s) | 558 |
| BseBI | CCWGG | 1 cut(s) | 405 |
| BseDI | CCNNGG | 2 cut(s) | 403, 437 |
| BseGI | GGATG | 2 cut(s) | 305, 610 |
| BseJI | GATNNNNATC | 1 cut(s) | 558 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 258, 328, 381, 410, 439 |
| BseMI | GCAATG | 1 cut(s) | 376 |
| BseMII | CTCAG | 2 cut(s) | 156, 497 |
| BseSI | GKGCMC | 2 cut(s) | 460, 600 |
| BseXI | GCAGC | 1 cut(s) | 595 |
| Bsh1236I | CGCG | 1 cut(s) | 128 |
| BshNI | GGYRCC | 1 cut(s) | 425 |
| BsiHKAI | GWGCWC | 2 cut(s) | 460, 600 |
| BslFI | GGGAC | 1 cut(s) | 515 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 258, 328, 381, 410, 439 |
| BsmFI | GGGAC | 1 cut(s) | 515 |
| BsmI | GAATGC | 1 cut(s) | 225 |
| Bsp1286I | GDGCHC | 2 cut(s) | 460, 600 |
| Bsp143I | GATC | 1 cut(s) | 123 |
| Bsp68I | TCGCGA | 1 cut(s) | 128 |
| BspACI | CCGC | 2 cut(s) | 100, 271 |
| BspCNI | CTCAG | 2 cut(s) | 157, 498 |
| BspFNI | CGCG | 1 cut(s) | 128 |
| BspHI | TCATGA | 1 cut(s) | 229 |
| BspLI | GGNNCC | 4 cut(s) | 275, 309, 427, 503 |
| BspMAI | CTGCAG | 1 cut(s) | 613 |
| BspMI | ACCTGC | 1 cut(s) | 333 |
| BspPI | GGATC | 1 cut(s) | 131 |
| BspT107I | GGYRCC | 1 cut(s) | 425 |
| BsrBI | CCGCTC | 1 cut(s) | 271 |
| BsrDI | GCAATG | 1 cut(s) | 376 |
| BssECI | CCNNGG | 2 cut(s) | 403, 437 |
| BssMI | GATC | 1 cut(s) | 123 |
| BssNI | GRCGYC | 1 cut(s) | 426 |
| BssSI | CACGAG | 1 cut(s) | 185 |
| BssT1I | CCWWGG | 1 cut(s) | 437 |
| Bst2BI | CACGAG | 1 cut(s) | 185 |
| Bst2UI | CCWGG | 1 cut(s) | 405 |
| BstACI | GRCGYC | 1 cut(s) | 426 |
| BstBAI | YACGTR | 2 cut(s) | 362, 380 |
| BstDEI | CTNAG | 4 cut(s) | 165, 219, 279, 506 |
| BstF5I | GGATG | 2 cut(s) | 305, 610 |
| BstFNI | CGCG | 1 cut(s) | 128 |
| BstH2I | RGCGCY | 1 cut(s) | 429 |
| BstHHI | GCGC | 2 cut(s) | 264, 428 |
| BstKTI | GATC | 1 cut(s) | 126 |
| BstMBI | GATC | 1 cut(s) | 123 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 268 |
| BstNI | CCWGG | 1 cut(s) | 405 |
| BstNSI | RCATGY | 1 cut(s) | 26 |
| BstSCI | CCNGG | 1 cut(s) | 403 |
| BstSFI | CTRYAG | 2 cut(s) | 159, 609 |
| BstSLI | GKGCMC | 2 cut(s) | 460, 600 |
| BstUI | CGCG | 1 cut(s) | 128 |
| BstV1I | GCAGC | 1 cut(s) | 595 |
| Bsu36I | CCTNAGG | 1 cut(s) | 506 |
| BsuI | GTATCC | 1 cut(s) | 410 |
| BtsCI | GGATG | 2 cut(s) | 305, 610 |
| BtuMI | TCGCGA | 1 cut(s) | 128 |
| BveI | ACCTGC | 1 cut(s) | 333 |
| CciI | TCATGA | 1 cut(s) | 229 |
| CfoI | GCGC | 2 cut(s) | 264, 428 |
| Cfr13I | GGNCC | 2 cut(s) | 308, 502 |
| Csp6I | GTAC | 1 cut(s) | 523 |
| CviAII | CATG | 5 cut(s) | 23, 173, 230, 410, 490 |
| CviJI | RGCY | 4 cut(s) | 40, 77, 142, 164 |
| CviKI_1 | RGCY | 4 cut(s) | 40, 77, 142, 164 |
| CviQI | GTAC | 1 cut(s) | 523 |
| DdeI | CTNAG | 4 cut(s) | 165, 219, 279, 506 |
| DinI | GGCGCC | 1 cut(s) | 427 |
| DpnI | GATC | 1 cut(s) | 125 |
| DpnII | GATC | 1 cut(s) | 123 |
| DraIII | CACNNNGTG | 2 cut(s) | 365, 455 |
| DriI | GACNNNNNGTC | 1 cut(s) | 23 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 1 cut(s) | 437 |
| Eco47I | GGWCC | 2 cut(s) | 308, 502 |
| Eco72I | CACGTG | 2 cut(s) | 362, 380 |
| Eco81I | CCTNAGG | 1 cut(s) | 506 |
| EcoO109I | RGGNCCY | 1 cut(s) | 502 |
| EcoRII | CCWGG | 1 cut(s) | 403 |
| EcoT14I | CCWWGG | 1 cut(s) | 437 |
| EgeI | GGCGCC | 1 cut(s) | 427 |
| EheI | GGCGCC | 1 cut(s) | 427 |
| ErhI | CCWWGG | 1 cut(s) | 437 |
| FaeI | CATG | 5 cut(s) | 26, 176, 233, 413, 493 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 510, 542 |
| FaqI | GGGAC | 1 cut(s) | 515 |
| FatI | CATG | 5 cut(s) | 22, 172, 229, 409, 489 |
| Fnu4HI | GCNGC | 1 cut(s) | 609 |
| FokI | GGATG | 2 cut(s) | 312, 617 |
| Fsp4HI | GCNGC | 1 cut(s) | 609 |
| FspBI | CTAG | 1 cut(s) | 438 |
| GlaI | GCGC | 2 cut(s) | 263, 427 |
| GluI | GCNGC | 1 cut(s) | 609 |
| HaeII | RGCGCY | 1 cut(s) | 429 |
| HhaI | GCGC | 2 cut(s) | 264, 428 |
| Hin1I | GRCGYC | 1 cut(s) | 426 |
| Hin1II | CATG | 5 cut(s) | 26, 176, 233, 413, 493 |
| Hin6I | GCGC | 2 cut(s) | 262, 426 |
| HinP1I | GCGC | 2 cut(s) | 262, 426 |
| HphI | GGTGA | 1 cut(s) | 556 |
| Hpy166II | GTNNAC | 4 cut(s) | 17, 458, 523, 598 |
| Hpy188III | TCNNGA | 4 cut(s) | 127, 187, 204, 230 |
| Hpy8I | GTNNAC | 4 cut(s) | 17, 458, 523, 598 |
| HpyAV | CCTTC | 1 cut(s) | 73 |
| HpyCH4IV | ACGT | 3 cut(s) | 361, 379, 454 |
| HpyCH4V | TGCA | 5 cut(s) | 248, 458, 530, 598, 611 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 268 |
| HpyF3I | CTNAG | 4 cut(s) | 165, 219, 279, 506 |
| HpySE526I | ACGT | 3 cut(s) | 361, 379, 454 |
| Hsp92I | GRCGYC | 1 cut(s) | 426 |
| Hsp92II | CATG | 5 cut(s) | 26, 176, 233, 413, 493 |
| HspAI | GCGC | 2 cut(s) | 262, 426 |
| KasI | GGCGCC | 1 cut(s) | 425 |
| Kzo9I | GATC | 1 cut(s) | 123 |
| LmnI | GCTCC | 2 cut(s) | 268, 511 |
| LpnPI | CCDG | 6 cut(s) | 102, 328, 390, 417, 484, 518 |
| Lsp1109I | GCAGC | 1 cut(s) | 595 |
| LweI | GCATC | 1 cut(s) | 595 |
| MaeI | CTAG | 1 cut(s) | 438 |
| MaeII | ACGT | 3 cut(s) | 361, 379, 454 |
| MaeIII | GTNAC | 1 cut(s) | 25 |
| MalI | GATC | 1 cut(s) | 125 |
| MbiI | CCGCTC | 1 cut(s) | 271 |
| MboI | GATC | 1 cut(s) | 123 |
| MboII | GAAGA | 6 cut(s) | 202, 545, 548, 551, 554, 599 |
| MhlI | GDGCHC | 2 cut(s) | 460, 600 |
| MluCI | AATT | 5 cut(s) | 42, 193, 199, 238, 464 |
| Mly113I | GGCGCC | 1 cut(s) | 426 |
| MseI | TTAA | 1 cut(s) | 467 |
| MslI | CAYNNNNRTG | 1 cut(s) | 603 |
| MspR9I | CCNGG | 1 cut(s) | 405 |
| Mva1269I | GAATGC | 1 cut(s) | 225 |
| MvaI | CCWGG | 1 cut(s) | 405 |
| MvnI | CGCG | 1 cut(s) | 128 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 268 |
| NarI | GGCGCC | 1 cut(s) | 426 |
| NdeII | GATC | 1 cut(s) | 123 |
| NlaIII | CATG | 5 cut(s) | 26, 176, 233, 413, 493 |
| NlaIV | GGNNCC | 4 cut(s) | 275, 309, 427, 503 |
| NmuCI | GTSAC | 1 cut(s) | 25 |
| NruI | TCGCGA | 1 cut(s) | 128 |
| NspI | RCATGY | 1 cut(s) | 26 |
| PagI | TCATGA | 1 cut(s) | 229 |
| PciI | ACATGT | 1 cut(s) | 22 |
| PctI | GAATGC | 1 cut(s) | 225 |
| PkrI | GCNGC | 1 cut(s) | 610 |
| PluTI | GGCGCC | 1 cut(s) | 429 |
| PmaCI | CACGTG | 2 cut(s) | 362, 380 |
| PmlI | CACGTG | 2 cut(s) | 362, 380 |
| Ppu21I | YACGTR | 2 cut(s) | 362, 380 |
| PpuMI | RGGWCCY | 1 cut(s) | 502 |
| PscI | ACATGT | 1 cut(s) | 22 |
| PsiI | TTATAA | 2 cut(s) | 198, 243 |
| Psp5II | RGGWCCY | 1 cut(s) | 502 |
| Psp6I | CCWGG | 1 cut(s) | 403 |
| PspCI | CACGTG | 2 cut(s) | 362, 380 |
| PspGI | CCWGG | 1 cut(s) | 403 |
| PspN4I | GGNNCC | 4 cut(s) | 275, 309, 427, 503 |
| PspPI | GGNCC | 2 cut(s) | 308, 502 |
| PspPPI | RGGWCCY | 1 cut(s) | 502 |
| PstI | CTGCAG | 1 cut(s) | 613 |
| RruI | TCGCGA | 1 cut(s) | 128 |
| RsaI | GTAC | 1 cut(s) | 524 |
| RsaNI | GTAC | 1 cut(s) | 523 |
| RseI | CAYNNNNRTG | 1 cut(s) | 603 |
| SaqAI | TTAA | 1 cut(s) | 467 |
| SatI | GCNGC | 1 cut(s) | 609 |
| Sau3AI | GATC | 1 cut(s) | 123 |
| Sau96I | GGNCC | 2 cut(s) | 308, 502 |
| ScrFI | CCNGG | 1 cut(s) | 405 |
| SduI | GDGCHC | 2 cut(s) | 460, 600 |
| SfaNI | GCATC | 1 cut(s) | 595 |
| SfcI | CTRYAG | 2 cut(s) | 159, 609 |
| SfoI | GGCGCC | 1 cut(s) | 427 |
| SinI | GGWCC | 2 cut(s) | 308, 502 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 603 |
| Sse9I | AATT | 5 cut(s) | 42, 193, 199, 238, 464 |
| SsiI | CCGC | 2 cut(s) | 100, 271 |
| SspDI | GGCGCC | 1 cut(s) | 425 |
| SspMI | CTAG | 1 cut(s) | 438 |
| StyD4I | CCNGG | 1 cut(s) | 403 |
| StyI | CCWWGG | 1 cut(s) | 437 |
| TaiI | ACGT | 3 cut(s) | 364, 382, 457 |
| TasI | AATT | 5 cut(s) | 42, 193, 199, 238, 464 |
| Tru1I | TTAA | 1 cut(s) | 467 |
| Tru9I | TTAA | 1 cut(s) | 467 |
| TseFI | GTSAC | 1 cut(s) | 25 |
| TseI | GCWGC | 1 cut(s) | 608 |
| Tsp45I | GTSAC | 1 cut(s) | 25 |
| TspDTI | ATGAA | 3 cut(s) | 125, 218, 606 |
| TspGWI | ACGGA | 1 cut(s) | 136 |
| VneI | GTGCAC | 2 cut(s) | 456, 596 |
| VpaK11BI | GGWCC | 2 cut(s) | 308, 502 |
| XceI | RCATGY | 1 cut(s) | 26 |
| XmaJI | CCTAGG | 1 cut(s) | 437 |
| XspI | CTAG | 1 cut(s) | 438 |