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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 336, 381 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 435 |
| Acc65I | GGTACC | 1 cut(s) | 533 |
| AccB1I | GGYRCC | 1 cut(s) | 533 |
| AccBSI | CCGCTC | 1 cut(s) | 409 |
| AccI | GTMKAC | 1 cut(s) | 689 |
| AciI | CCGC | 3 cut(s) | 409, 469, 693 |
| AclWI | GGATC | 1 cut(s) | 622 |
| AcsI | RAATTY | 1 cut(s) | 37 |
| AdeI | CACNNNGTG | 1 cut(s) | 563 |
| AfaI | GTAC | 2 cut(s) | 241, 535 |
| AfeI | AGCGCT | 1 cut(s) | 21 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 395, 510 |
| AgsI | TTSAA | 6 cut(s) | 58, 65, 94, 342, 577, 664 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 94, 161 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 7, 39 |
| AluBI | AGCT | 4 cut(s) | 122, 280, 302, 668 |
| AluI | AGCT | 4 cut(s) | 122, 280, 302, 668 |
| Alw21I | GWGCWC | 2 cut(s) | 568, 684 |
| Alw26I | GTCTC | 2 cut(s) | 197, 229 |
| Alw44I | GTGCAC | 2 cut(s) | 564, 680 |
| AlwI | GGATC | 1 cut(s) | 622 |
| Aor51HI | AGCGCT | 1 cut(s) | 21 |
| AoxI | GGCC | 1 cut(s) | 344 |
| ApaLI | GTGCAC | 2 cut(s) | 564, 680 |
| ApoI | RAATTY | 1 cut(s) | 37 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 123 |
| Asp718I | GGTACC | 1 cut(s) | 533 |
| AspLEI | GCGC | 3 cut(s) | 22, 81, 402 |
| AspS9I | GGNCC | 2 cut(s) | 345, 437 |
| AsuHPI | GGTGA | 4 cut(s) | 378, 491, 640, 644 |
| AvaII | GGWCC | 1 cut(s) | 437 |
| BaeGI | GKGCMC | 2 cut(s) | 568, 684 |
| BanI | GGYRCC | 1 cut(s) | 533 |
| BauI | CACGAG | 2 cut(s) | 265, 323 |
| Bbv12I | GWGCWC | 2 cut(s) | 568, 684 |
| BccI | CCATC | 1 cut(s) | 623 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 233, 267 |
| BcoDI | GTCTC | 2 cut(s) | 197, 229 |
| BfaI | CTAG | 3 cut(s) | 12, 546, 669 |
| BfmI | CTRYAG | 1 cut(s) | 297 |
| BfoI | RGCGCY | 1 cut(s) | 23 |
| Bme18I | GGWCC | 1 cut(s) | 437 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 94, 161 |
| BmgT120I | GGNCC | 2 cut(s) | 345, 437 |
| BmiI | GGNNCC | 3 cut(s) | 413, 438, 535 |
| Bsa29I | ATCGAT | 1 cut(s) | 607 |
| BsaBI | GATNNNNATC | 1 cut(s) | 613 |
| BsaI | GGTCTC | 1 cut(s) | 229 |
| BsaJI | CCNNGG | 1 cut(s) | 243 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 505, 526, 535, 556 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 395, 510 |
| Bse1I | ACTGG | 1 cut(s) | 452 |
| Bse3DI | GCAATG | 2 cut(s) | 35, 505 |
| Bse8I | GATNNNNATC | 1 cut(s) | 613 |
| BseCI | ATCGAT | 1 cut(s) | 607 |
| BseDI | CCNNGG | 1 cut(s) | 243 |
| BseJI | GATNNNNATC | 1 cut(s) | 613 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 395, 510 |
| BseMI | GCAATG | 2 cut(s) | 35, 505 |
| BseMII | CTCAG | 1 cut(s) | 294 |
| BseNI | ACTGG | 1 cut(s) | 452 |
| BseRI | GAGGAG | 1 cut(s) | 35 |
| BseSI | GKGCMC | 2 cut(s) | 568, 684 |
| BshFI | GGCC | 1 cut(s) | 346 |
| BshNI | GGYRCC | 1 cut(s) | 533 |
| BshVI | ATCGAT | 1 cut(s) | 607 |
| BsiHKAI | GWGCWC | 2 cut(s) | 568, 684 |
| BslFI | GGGAC | 1 cut(s) | 441 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 395, 510 |
| BsmAI | GTCTC | 2 cut(s) | 197, 229 |
| BsmFI | GGGAC | 1 cut(s) | 441 |
| BsnI | GGCC | 1 cut(s) | 346 |
| Bso31I | GGTCTC | 1 cut(s) | 229 |
| Bsp1286I | GDGCHC | 2 cut(s) | 568, 684 |
| Bsp143I | GATC | 2 cut(s) | 261, 614 |
| BspACI | CCGC | 3 cut(s) | 409, 469, 693 |
| BspANI | GGCC | 1 cut(s) | 346 |
| BspCNI | CTCAG | 1 cut(s) | 295 |
| BspDI | ATCGAT | 1 cut(s) | 607 |
| BspHI | TCATGA | 1 cut(s) | 367 |
| BspLI | GGNNCC | 3 cut(s) | 413, 438, 535 |
| BspPI | GGATC | 1 cut(s) | 622 |
| BspQI | GCTCTTC | 2 cut(s) | 10, 129 |
| BspT107I | GGYRCC | 1 cut(s) | 533 |
| BspTNI | GGTCTC | 1 cut(s) | 229 |
| BsrBI | CCGCTC | 1 cut(s) | 409 |
| BsrDI | GCAATG | 2 cut(s) | 35, 505 |
| BsrI | ACTGG | 1 cut(s) | 452 |
| BssECI | CCNNGG | 1 cut(s) | 243 |
| BssMI | GATC | 2 cut(s) | 261, 614 |
| BssNAI | GTATAC | 1 cut(s) | 690 |
| BssSI | CACGAG | 2 cut(s) | 265, 323 |
| Bst1107I | GTATAC | 1 cut(s) | 690 |
| Bst2BI | CACGAG | 2 cut(s) | 265, 323 |
| Bst6I | CTCTTC | 2 cut(s) | 10, 129 |
| BstDEI | CTNAG | 3 cut(s) | 303, 357, 417 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 393 |
| BstH2I | RGCGCY | 1 cut(s) | 23 |
| BstHHI | GCGC | 3 cut(s) | 22, 81, 402 |
| BstKTI | GATC | 2 cut(s) | 264, 617 |
| BstMAI | GTCTC | 2 cut(s) | 197, 229 |
| BstMBI | GATC | 2 cut(s) | 261, 614 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 406 |
| BstSFI | CTRYAG | 1 cut(s) | 297 |
| BstSLI | GKGCMC | 2 cut(s) | 568, 684 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 447 |
| BstZ17I | GTATAC | 1 cut(s) | 690 |
| Bsu15I | ATCGAT | 1 cut(s) | 607 |
| BsuRI | GGCC | 1 cut(s) | 346 |
| BsuTUI | ATCGAT | 1 cut(s) | 607 |
| CciI | TCATGA | 1 cut(s) | 367 |
| CfoI | GCGC | 3 cut(s) | 22, 81, 402 |
| Cfr13I | GGNCC | 2 cut(s) | 345, 437 |
| ClaI | ATCGAT | 1 cut(s) | 607 |
| Csp6I | GTAC | 2 cut(s) | 240, 534 |
| CviAII | CATG | 3 cut(s) | 139, 311, 368 |
| CviJI | RGCY | 5 cut(s) | 122, 280, 302, 346, 668 |
| CviKI_1 | RGCY | 5 cut(s) | 122, 280, 302, 346, 668 |
| CviQI | GTAC | 2 cut(s) | 240, 534 |
| DdeI | CTNAG | 3 cut(s) | 303, 357, 417 |
| DpnI | GATC | 2 cut(s) | 263, 616 |
| DpnII | GATC | 2 cut(s) | 261, 614 |
| DraIII | CACNNNGTG | 1 cut(s) | 563 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 435 |
| DriI | GACNNNNNGTC | 2 cut(s) | 94, 161 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 435 |
| Eam1104I | CTCTTC | 2 cut(s) | 10, 129 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 94, 161 |
| EarI | CTCTTC | 2 cut(s) | 10, 129 |
| Eco31I | GGTCTC | 1 cut(s) | 229 |
| Eco47I | GGWCC | 1 cut(s) | 437 |
| Eco47III | AGCGCT | 1 cut(s) | 21 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 393 |
| FaeI | CATG | 3 cut(s) | 142, 314, 371 |
| FaqI | GGGAC | 1 cut(s) | 441 |
| FatI | CATG | 3 cut(s) | 138, 310, 367 |
| FblI | GTMKAC | 1 cut(s) | 689 |
| FspBI | CTAG | 3 cut(s) | 12, 546, 669 |
| GlaI | GCGC | 3 cut(s) | 21, 80, 401 |
| HaeII | RGCGCY | 1 cut(s) | 23 |
| HaeIII | GGCC | 1 cut(s) | 346 |
| HhaI | GCGC | 3 cut(s) | 22, 81, 402 |
| Hin1II | CATG | 3 cut(s) | 142, 314, 371 |
| Hin6I | GCGC | 3 cut(s) | 20, 79, 400 |
| HinP1I | GCGC | 3 cut(s) | 20, 79, 400 |
| HphI | GGTGA | 4 cut(s) | 378, 491, 640, 644 |
| Hpy166II | GTNNAC | 5 cut(s) | 155, 557, 566, 682, 690 |
| Hpy188I | TCNGA | 2 cut(s) | 118, 454 |
| Hpy188III | TCNNGA | 3 cut(s) | 265, 325, 368 |
| Hpy8I | GTNNAC | 5 cut(s) | 155, 557, 566, 682, 690 |
| HpyAV | CCTTC | 4 cut(s) | 52, 211, 455, 571 |
| HpyCH4IV | ACGT | 2 cut(s) | 553, 562 |
| HpyCH4V | TGCA | 2 cut(s) | 566, 682 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 406 |
| HpyF3I | CTNAG | 3 cut(s) | 303, 357, 417 |
| HpySE526I | ACGT | 2 cut(s) | 553, 562 |
| Hsp92II | CATG | 3 cut(s) | 142, 314, 371 |
| HspAI | GCGC | 3 cut(s) | 20, 79, 400 |
| KpnI | GGTACC | 1 cut(s) | 537 |
| Kzo9I | GATC | 2 cut(s) | 261, 614 |
| LguI | GCTCTTC | 2 cut(s) | 10, 129 |
| LmnI | GCTCC | 1 cut(s) | 406 |
| LpnPI | CCDG | 4 cut(s) | 63, 174, 240, 433 |
| MaeI | CTAG | 3 cut(s) | 12, 546, 669 |
| MaeII | ACGT | 2 cut(s) | 553, 562 |
| MaeIII | GTNAC | 1 cut(s) | 163 |
| MalI | GATC | 2 cut(s) | 263, 616 |
| MbiI | CCGCTC | 1 cut(s) | 409 |
| MboI | GATC | 2 cut(s) | 261, 614 |
| MboII | GAAGA | 4 cut(s) | 27, 116, 635, 638 |
| MfeI | CAATTG | 2 cut(s) | 216, 572 |
| MhlI | GDGCHC | 2 cut(s) | 568, 684 |
| MluCI | AATT | 9 cut(s) | 37, 112, 180, 216, 331, 337, 376, 382, 572 |
| MroXI | GAANNNNTTC | 1 cut(s) | 123 |
| MslI | CAYNNNNRTG | 4 cut(s) | 323, 489, 594, 609 |
| MunI | CAATTG | 2 cut(s) | 216, 572 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 406 |
| NdeII | GATC | 2 cut(s) | 261, 614 |
| NlaIII | CATG | 3 cut(s) | 142, 314, 371 |
| NlaIV | GGNNCC | 3 cut(s) | 413, 438, 535 |
| NmuCI | GTSAC | 1 cut(s) | 163 |
| PagI | TCATGA | 1 cut(s) | 367 |
| PciSI | GCTCTTC | 2 cut(s) | 10, 129 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 559 |
| PdmI | GAANNNNTTC | 1 cut(s) | 123 |
| PsiI | TTATAA | 2 cut(s) | 336, 381 |
| PspN4I | GGNNCC | 3 cut(s) | 413, 438, 535 |
| PspPI | GGNCC | 2 cut(s) | 345, 437 |
| RsaI | GTAC | 2 cut(s) | 241, 535 |
| RsaNI | GTAC | 2 cut(s) | 240, 534 |
| RseI | CAYNNNNRTG | 4 cut(s) | 323, 489, 594, 609 |
| SapI | GCTCTTC | 2 cut(s) | 10, 129 |
| Sau3AI | GATC | 2 cut(s) | 261, 614 |
| Sau96I | GGNCC | 2 cut(s) | 345, 437 |
| SduI | GDGCHC | 2 cut(s) | 568, 684 |
| SfcI | CTRYAG | 1 cut(s) | 297 |
| SinI | GGWCC | 1 cut(s) | 437 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 323, 489, 594, 609 |
| Sse9I | AATT | 9 cut(s) | 37, 112, 180, 216, 331, 337, 376, 382, 572 |
| SsiI | CCGC | 3 cut(s) | 409, 469, 693 |
| SspI | AATATT | 1 cut(s) | 289 |
| SspMI | CTAG | 3 cut(s) | 12, 546, 669 |
| TaiI | ACGT | 2 cut(s) | 556, 565 |
| TaqI | TCGA | 1 cut(s) | 607 |
| TasI | AATT | 9 cut(s) | 37, 112, 180, 216, 331, 337, 376, 382, 572 |
| TseFI | GTSAC | 1 cut(s) | 163 |
| Tsp45I | GTSAC | 1 cut(s) | 163 |
| TspDTI | ATGAA | 3 cut(s) | 263, 356, 690 |
| VneI | GTGCAC | 2 cut(s) | 564, 680 |
| VpaK11BI | GGWCC | 1 cut(s) | 437 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 393 |
| XapI | RAATTY | 1 cut(s) | 37 |
| XmiI | GTMKAC | 1 cut(s) | 689 |
| XmnI | GAANNNNTTC | 1 cut(s) | 123 |
| XspI | CTAG | 3 cut(s) | 12, 546, 669 |