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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 420 |
| AccB1I | GGYRCC | 2 cut(s) | 375, 533 |
| AciI | CCGC | 2 cut(s) | 145, 675 |
| AcoI | YGGCCR | 1 cut(s) | 520 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcuI | CTGAAG | 1 cut(s) | 339 |
| AcyI | GRCGYC | 2 cut(s) | 376, 534 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 371 |
| AgsI | TTSAA | 2 cut(s) | 160, 571 |
| AluBI | AGCT | 6 cut(s) | 64, 345, 355, 552, 656, 707 |
| AluI | AGCT | 6 cut(s) | 64, 345, 355, 552, 656, 707 |
| Alw21I | GWGCWC | 2 cut(s) | 347, 658 |
| Alw26I | GTCTC | 1 cut(s) | 76 |
| AoxI | GGCC | 1 cut(s) | 520 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 3 cut(s) | 378, 536, 577 |
| AspS9I | GGNCC | 1 cut(s) | 422 |
| AsuHPI | GGTGA | 2 cut(s) | 446, 664 |
| AvaII | GGWCC | 1 cut(s) | 422 |
| BaeGI | GKGCMC | 2 cut(s) | 364, 643 |
| BalI | TGGCCA | 1 cut(s) | 522 |
| BanI | GGYRCC | 2 cut(s) | 375, 533 |
| BanII | GRGCYC | 2 cut(s) | 347, 658 |
| BauI | CACGAG | 1 cut(s) | 657 |
| BbsI | GAAGAC | 3 cut(s) | 57, 260, 327 |
| Bbv12I | GWGCWC | 2 cut(s) | 347, 658 |
| BccI | CCATC | 3 cut(s) | 126, 280, 545 |
| BclI | TGATCA | 1 cut(s) | 631 |
| BcoDI | GTCTC | 1 cut(s) | 76 |
| BfaI | CTAG | 2 cut(s) | 122, 743 |
| BfoI | RGCGCY | 3 cut(s) | 379, 537, 578 |
| Bme18I | GGWCC | 1 cut(s) | 422 |
| BmgT120I | GGNCC | 1 cut(s) | 422 |
| BmiI | GGNNCC | 3 cut(s) | 377, 476, 535 |
| BpiI | GAAGAC | 3 cut(s) | 57, 260, 327 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| BsaBI | GATNNNNATC | 1 cut(s) | 738 |
| BsaHI | GRCGYC | 2 cut(s) | 376, 534 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 371 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| Bse8I | GATNNNNATC | 1 cut(s) | 738 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseGI | GGATG | 1 cut(s) | 22 |
| BseJI | GATNNNNATC | 1 cut(s) | 738 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 371 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseSI | GKGCMC | 2 cut(s) | 364, 643 |
| BshFI | GGCC | 1 cut(s) | 522 |
| BshNI | GGYRCC | 2 cut(s) | 375, 533 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BsiHKAI | GWGCWC | 2 cut(s) | 347, 658 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 371 |
| BsmAI | GTCTC | 1 cut(s) | 76 |
| BsnI | GGCC | 1 cut(s) | 522 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 4 cut(s) | 347, 364, 643, 658 |
| Bsp143I | GATC | 3 cut(s) | 228, 631, 739 |
| BspACI | CCGC | 2 cut(s) | 145, 675 |
| BspANI | GGCC | 1 cut(s) | 522 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspHI | TCATGA | 1 cut(s) | 339 |
| BspLI | GGNNCC | 3 cut(s) | 377, 476, 535 |
| BspT107I | GGYRCC | 2 cut(s) | 375, 533 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssMI | GATC | 3 cut(s) | 228, 631, 739 |
| BssNI | GRCGYC | 2 cut(s) | 376, 534 |
| BssSI | CACGAG | 1 cut(s) | 657 |
| Bst2BI | CACGAG | 1 cut(s) | 657 |
| Bst6I | CTCTTC | 1 cut(s) | 475 |
| BstACI | GRCGYC | 2 cut(s) | 376, 534 |
| BstDEI | CTNAG | 3 cut(s) | 294, 398, 546 |
| BstF5I | GGATG | 1 cut(s) | 22 |
| BstH2I | RGCGCY | 3 cut(s) | 379, 537, 578 |
| BstHHI | GCGC | 3 cut(s) | 378, 536, 577 |
| BstKTI | GATC | 3 cut(s) | 231, 634, 742 |
| BstMAI | GTCTC | 1 cut(s) | 76 |
| BstMBI | GATC | 3 cut(s) | 228, 631, 739 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 382, 572, 683, 704 |
| BstSLI | GKGCMC | 2 cut(s) | 364, 643 |
| BstV2I | GAAGAC | 3 cut(s) | 57, 260, 327 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 530 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| BsuRI | GGCC | 1 cut(s) | 522 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 1 cut(s) | 22 |
| CciI | TCATGA | 1 cut(s) | 339 |
| CfoI | GCGC | 3 cut(s) | 378, 536, 577 |
| Cfr13I | GGNCC | 1 cut(s) | 422 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 4 cut(s) | 340, 471, 491, 524 |
| CviJI | RGCY | 9 cut(s) | 64, 141, 345, 355, 522, 552, 566, 656, 707 |
| CviKI_1 | RGCY | 9 cut(s) | 64, 141, 345, 355, 522, 552, 566, 656, 707 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 3 cut(s) | 294, 398, 546 |
| DinI | GGCGCC | 2 cut(s) | 377, 535 |
| DpnI | GATC | 3 cut(s) | 230, 633, 741 |
| DpnII | GATC | 3 cut(s) | 228, 631, 739 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 420 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 420 |
| EaeI | YGGCCR | 1 cut(s) | 520 |
| Eam1104I | CTCTTC | 1 cut(s) | 475 |
| EarI | CTCTTC | 1 cut(s) | 475 |
| Ecl136II | GAGCTC | 2 cut(s) | 345, 656 |
| Eco24I | GRGCYC | 2 cut(s) | 347, 658 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 422 |
| Eco53kI | GAGCTC | 2 cut(s) | 345, 656 |
| Eco57I | CTGAAG | 1 cut(s) | 339 |
| EcoICRI | GAGCTC | 2 cut(s) | 345, 656 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoT38I | GRGCYC | 2 cut(s) | 347, 658 |
| EgeI | GGCGCC | 2 cut(s) | 377, 535 |
| EheI | GGCGCC | 2 cut(s) | 377, 535 |
| FaeI | CATG | 4 cut(s) | 343, 474, 494, 527 |
| FatI | CATG | 4 cut(s) | 339, 470, 490, 523 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FbaI | TGATCA | 1 cut(s) | 631 |
| FokI | GGATG | 1 cut(s) | 29 |
| FriOI | GRGCYC | 2 cut(s) | 347, 658 |
| FspBI | CTAG | 2 cut(s) | 122, 743 |
| GlaI | GCGC | 3 cut(s) | 377, 535, 576 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 3 cut(s) | 379, 537, 578 |
| HaeIII | GGCC | 1 cut(s) | 522 |
| HhaI | GCGC | 3 cut(s) | 378, 536, 577 |
| Hin1I | GRCGYC | 2 cut(s) | 376, 534 |
| Hin1II | CATG | 4 cut(s) | 343, 474, 494, 527 |
| Hin6I | GCGC | 3 cut(s) | 376, 534, 575 |
| HinP1I | GCGC | 3 cut(s) | 376, 534, 575 |
| HincII | GTYRAC | 1 cut(s) | 94 |
| HindII | GTYRAC | 1 cut(s) | 94 |
| HinfI | GANTC | 6 cut(s) | 4, 20, 104, 256, 306, 326 |
| HphI | GGTGA | 2 cut(s) | 446, 664 |
| Hpy166II | GTNNAC | 2 cut(s) | 94, 488 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 631 |
| Hpy188III | TCNNGA | 6 cut(s) | 116, 170, 340, 659, 731, 743 |
| Hpy8I | GTNNAC | 2 cut(s) | 94, 488 |
| HpyAV | CCTTC | 2 cut(s) | 283, 719 |
| HpyCH4IV | ACGT | 2 cut(s) | 96, 415 |
| HpyCH4V | TGCA | 1 cut(s) | 281 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 382, 572, 683, 704 |
| HpyF3I | CTNAG | 3 cut(s) | 294, 398, 546 |
| HpySE526I | ACGT | 2 cut(s) | 96, 415 |
| Hsp92I | GRCGYC | 2 cut(s) | 376, 534 |
| Hsp92II | CATG | 4 cut(s) | 343, 474, 494, 527 |
| HspAI | GCGC | 3 cut(s) | 376, 534, 575 |
| KasI | GGCGCC | 2 cut(s) | 375, 533 |
| Ksp22I | TGATCA | 1 cut(s) | 631 |
| Kzo9I | GATC | 3 cut(s) | 228, 631, 739 |
| LmnI | GCTCC | 2 cut(s) | 30, 352 |
| LpnPI | CCDG | 6 cut(s) | 41, 70, 122, 129, 405, 504 |
| MaeI | CTAG | 2 cut(s) | 122, 743 |
| MaeII | ACGT | 2 cut(s) | 96, 415 |
| MaeIII | GTNAC | 2 cut(s) | 101, 313 |
| MalI | GATC | 3 cut(s) | 230, 633, 741 |
| MboI | GATC | 3 cut(s) | 228, 631, 739 |
| MboII | GAAGA | 7 cut(s) | 59, 62, 265, 332, 458, 492, 674 |
| MhlI | GDGCHC | 4 cut(s) | 347, 364, 643, 658 |
| MlsI | TGGCCA | 1 cut(s) | 522 |
| MluCI | AATT | 2 cut(s) | 212, 666 |
| MluNI | TGGCCA | 1 cut(s) | 522 |
| Mly113I | GGCGCC | 2 cut(s) | 376, 534 |
| MlyI | GAGTC | 2 cut(s) | 98, 250 |
| MnlI | CCTC | 8 cut(s) | 152, 365, 476, 496, 500, 526, 556, 588 |
| Mox20I | TGGCCA | 1 cut(s) | 522 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 522 |
| MseI | TTAA | 2 cut(s) | 198, 206 |
| MslI | CAYNNNNRTG | 2 cut(s) | 15, 528 |
| Msp20I | TGGCCA | 1 cut(s) | 522 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 382, 572, 683, 704 |
| NarI | GGCGCC | 2 cut(s) | 376, 534 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 228, 631, 739 |
| NlaIII | CATG | 4 cut(s) | 343, 474, 494, 527 |
| NlaIV | GGNNCC | 3 cut(s) | 377, 476, 535 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| PagI | TCATGA | 1 cut(s) | 339 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 3 cut(s) | 20, 306, 326 |
| PleI | GAGTC | 2 cut(s) | 98, 250 |
| PluTI | GGCGCC | 2 cut(s) | 379, 537 |
| PpsI | GAGTC | 2 cut(s) | 98, 250 |
| Psp124BI | GAGCTC | 2 cut(s) | 347, 658 |
| PspN4I | GGNNCC | 3 cut(s) | 377, 476, 535 |
| PspPI | GGNCC | 1 cut(s) | 422 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 2 cut(s) | 15, 528 |
| SacI | GAGCTC | 2 cut(s) | 347, 658 |
| SaqAI | TTAA | 2 cut(s) | 198, 206 |
| Sau3AI | GATC | 3 cut(s) | 228, 631, 739 |
| Sau96I | GGNCC | 1 cut(s) | 422 |
| SchI | GAGTC | 2 cut(s) | 98, 250 |
| SduI | GDGCHC | 4 cut(s) | 347, 364, 643, 658 |
| SfoI | GGCGCC | 2 cut(s) | 377, 535 |
| SinI | GGWCC | 1 cut(s) | 422 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 15, 528 |
| Sse9I | AATT | 2 cut(s) | 212, 666 |
| SsiI | CCGC | 2 cut(s) | 145, 675 |
| SspDI | GGCGCC | 2 cut(s) | 375, 533 |
| SspMI | CTAG | 2 cut(s) | 122, 743 |
| SstI | GAGCTC | 2 cut(s) | 347, 658 |
| TaiI | ACGT | 2 cut(s) | 99, 418 |
| TaqI | TCGA | 2 cut(s) | 304, 309 |
| TasI | AATT | 2 cut(s) | 212, 666 |
| TfiI | GAWTC | 3 cut(s) | 20, 306, 326 |
| Tru1I | TTAA | 2 cut(s) | 198, 206 |
| Tru9I | TTAA | 2 cut(s) | 198, 206 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 3 cut(s) | 56, 60, 328 |
| TspGWI | ACGGA | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 1 cut(s) | 422 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XbaI | TCTAGA | 1 cut(s) | 742 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 122, 743 |