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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 474 |
| AccB1I | GGYRCC | 1 cut(s) | 587 |
| AclWI | GGATC | 1 cut(s) | 455 |
| AcsI | RAATTY | 1 cut(s) | 332 |
| AcuI | CTGAAG | 1 cut(s) | 324 |
| AcyI | GRCGYC | 1 cut(s) | 588 |
| AdeI | CACNNNGTG | 1 cut(s) | 769 |
| AfaI | GTAC | 1 cut(s) | 152 |
| AgsI | TTSAA | 2 cut(s) | 280, 625 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 29, 61, 192, 224 |
| AleI | CACNNNNGTG | 1 cut(s) | 270 |
| AluBI | AGCT | 3 cut(s) | 606, 710, 761 |
| AluI | AGCT | 3 cut(s) | 606, 710, 761 |
| Alw21I | GWGCWC | 1 cut(s) | 712 |
| Alw26I | GTCTC | 3 cut(s) | 33, 196, 400 |
| AlwI | GGATC | 1 cut(s) | 455 |
| ApeKI | GCWGC | 1 cut(s) | 83 |
| ApoI | RAATTY | 1 cut(s) | 332 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 309 |
| AspLEI | GCGC | 1 cut(s) | 590 |
| AspS9I | GGNCC | 1 cut(s) | 476 |
| AvaII | GGWCC | 1 cut(s) | 476 |
| BaeGI | GKGCMC | 1 cut(s) | 697 |
| BanI | GGYRCC | 1 cut(s) | 587 |
| BanII | GRGCYC | 1 cut(s) | 712 |
| BauI | CACGAG | 1 cut(s) | 711 |
| BbsI | GAAGAC | 3 cut(s) | 14, 177, 380 |
| Bbv12I | GWGCWC | 1 cut(s) | 712 |
| BbvI | GCAGC | 1 cut(s) | 95 |
| BccI | CCATC | 3 cut(s) | 119, 246, 400 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 419, 453 |
| BciVI | GTATCC | 1 cut(s) | 451 |
| BclI | TGATCA | 1 cut(s) | 685 |
| BcoDI | GTCTC | 3 cut(s) | 33, 196, 400 |
| BfaI | CTAG | 3 cut(s) | 242, 392, 797 |
| BfmI | CTRYAG | 1 cut(s) | 438 |
| BfoI | RGCGCY | 1 cut(s) | 591 |
| BfuI | GTATCC | 1 cut(s) | 451 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| BisI | GCNGC | 1 cut(s) | 84 |
| BlsI | GCNGC | 1 cut(s) | 85 |
| Bme18I | GGWCC | 1 cut(s) | 476 |
| BmgT120I | GGNCC | 1 cut(s) | 476 |
| BmiI | GGNNCC | 2 cut(s) | 530, 589 |
| BmsI | GCATC | 1 cut(s) | 607 |
| BpiI | GAAGAC | 3 cut(s) | 14, 177, 380 |
| BpmI | CTGGAG | 1 cut(s) | 131 |
| Bsa29I | ATCGAT | 1 cut(s) | 429 |
| BsaHI | GRCGYC | 1 cut(s) | 588 |
| BsaI | GGTCTC | 2 cut(s) | 33, 196 |
| Bse1I | ACTGG | 1 cut(s) | 148 |
| BseCI | ATCGAT | 1 cut(s) | 429 |
| BseGI | GGATG | 2 cut(s) | 114, 142 |
| BseNI | ACTGG | 1 cut(s) | 148 |
| BseSI | GKGCMC | 1 cut(s) | 697 |
| BseXI | GCAGC | 1 cut(s) | 95 |
| BshNI | GGYRCC | 1 cut(s) | 587 |
| BshVI | ATCGAT | 1 cut(s) | 429 |
| BsiHKAI | GWGCWC | 1 cut(s) | 712 |
| BsmAI | GTCTC | 3 cut(s) | 33, 196, 400 |
| Bso31I | GGTCTC | 2 cut(s) | 33, 196 |
| Bsp1286I | GDGCHC | 2 cut(s) | 697, 712 |
| Bsp143I | GATC | 5 cut(s) | 348, 447, 685, 781, 793 |
| BspDI | ATCGAT | 1 cut(s) | 429 |
| BspLI | GGNNCC | 2 cut(s) | 530, 589 |
| BspMAI | CTGCAG | 1 cut(s) | 442 |
| BspPI | GGATC | 1 cut(s) | 455 |
| BspT107I | GGYRCC | 1 cut(s) | 587 |
| BspTNI | GGTCTC | 2 cut(s) | 33, 196 |
| BsrI | ACTGG | 1 cut(s) | 148 |
| BssMI | GATC | 5 cut(s) | 348, 447, 685, 781, 793 |
| BssNI | GRCGYC | 1 cut(s) | 588 |
| BssSI | CACGAG | 1 cut(s) | 711 |
| Bst2BI | CACGAG | 1 cut(s) | 711 |
| Bst6I | CTCTTC | 1 cut(s) | 529 |
| BstACI | GRCGYC | 1 cut(s) | 588 |
| BstDEI | CTNAG | 3 cut(s) | 88, 414, 600 |
| BstEII | GGTNACC | 1 cut(s) | 503 |
| BstF5I | GGATG | 2 cut(s) | 114, 142 |
| BstH2I | RGCGCY | 1 cut(s) | 591 |
| BstHHI | GCGC | 1 cut(s) | 590 |
| BstKTI | GATC | 5 cut(s) | 351, 450, 688, 784, 796 |
| BstMAI | GTCTC | 3 cut(s) | 33, 196, 400 |
| BstMBI | GATC | 5 cut(s) | 348, 447, 685, 781, 793 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 92, 101, 626, 737, 758 |
| BstNSI | RCATGY | 1 cut(s) | 744 |
| BstPI | GGTNACC | 1 cut(s) | 503 |
| BstSFI | CTRYAG | 1 cut(s) | 438 |
| BstSLI | GKGCMC | 1 cut(s) | 697 |
| BstV1I | GCAGC | 1 cut(s) | 95 |
| BstV2I | GAAGAC | 3 cut(s) | 14, 177, 380 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 584 |
| Bsu15I | ATCGAT | 1 cut(s) | 429 |
| BsuI | GTATCC | 1 cut(s) | 451 |
| BsuTUI | ATCGAT | 1 cut(s) | 429 |
| BtgZI | GCGATG | 1 cut(s) | 374 |
| BtsCI | GGATG | 2 cut(s) | 114, 142 |
| BtsI | GCAGTG | 1 cut(s) | 726 |
| BtsIMutI | CAGTG | 1 cut(s) | 726 |
| CfoI | GCGC | 1 cut(s) | 590 |
| Cfr13I | GGNCC | 1 cut(s) | 476 |
| ClaI | ATCGAT | 1 cut(s) | 429 |
| Csp6I | GTAC | 1 cut(s) | 151 |
| CviAII | CATG | 2 cut(s) | 578, 741 |
| CviJI | RGCY | 6 cut(s) | 86, 110, 261, 606, 710, 761 |
| CviKI_1 | RGCY | 6 cut(s) | 86, 110, 261, 606, 710, 761 |
| CviQI | GTAC | 1 cut(s) | 151 |
| DdeI | CTNAG | 3 cut(s) | 88, 414, 600 |
| DinI | GGCGCC | 1 cut(s) | 589 |
| DpnI | GATC | 5 cut(s) | 350, 449, 687, 783, 795 |
| DpnII | GATC | 5 cut(s) | 348, 447, 685, 781, 793 |
| DraIII | CACNNNGTG | 1 cut(s) | 769 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 474 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 474 |
| Eam1104I | CTCTTC | 1 cut(s) | 529 |
| EarI | CTCTTC | 1 cut(s) | 529 |
| Ecl136II | GAGCTC | 1 cut(s) | 710 |
| Eco24I | GRGCYC | 1 cut(s) | 712 |
| Eco31I | GGTCTC | 2 cut(s) | 33, 196 |
| Eco47I | GGWCC | 1 cut(s) | 476 |
| Eco53kI | GAGCTC | 1 cut(s) | 710 |
| Eco57I | CTGAAG | 1 cut(s) | 324 |
| Eco91I | GGTNACC | 1 cut(s) | 503 |
| EcoICRI | GAGCTC | 1 cut(s) | 710 |
| EcoO65I | GGTNACC | 1 cut(s) | 503 |
| EcoRI | GAATTC | 1 cut(s) | 332 |
| EcoT38I | GRGCYC | 1 cut(s) | 712 |
| EgeI | GGCGCC | 1 cut(s) | 589 |
| EheI | GGCGCC | 1 cut(s) | 589 |
| FaeI | CATG | 2 cut(s) | 581, 744 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 445, 477 |
| FatI | CATG | 2 cut(s) | 577, 740 |
| FauNDI | CATATG | 1 cut(s) | 132 |
| FbaI | TGATCA | 1 cut(s) | 685 |
| Fnu4HI | GCNGC | 1 cut(s) | 84 |
| FokI | GGATG | 2 cut(s) | 101, 149 |
| FriOI | GRGCYC | 1 cut(s) | 712 |
| Fsp4HI | GCNGC | 1 cut(s) | 84 |
| FspBI | CTAG | 3 cut(s) | 242, 392, 797 |
| GlaI | GCGC | 1 cut(s) | 589 |
| GluI | GCNGC | 1 cut(s) | 84 |
| GsuI | CTGGAG | 1 cut(s) | 131 |
| HaeII | RGCGCY | 1 cut(s) | 591 |
| HhaI | GCGC | 1 cut(s) | 590 |
| Hin1I | GRCGYC | 1 cut(s) | 588 |
| Hin1II | CATG | 2 cut(s) | 581, 744 |
| Hin6I | GCGC | 1 cut(s) | 588 |
| HinP1I | GCGC | 1 cut(s) | 588 |
| HinfI | GANTC | 3 cut(s) | 124, 376, 426 |
| Hpy188I | TCNGA | 3 cut(s) | 304, 574, 685 |
| Hpy188III | TCNNGA | 6 cut(s) | 73, 236, 669, 713, 785, 797 |
| HpyAV | CCTTC | 2 cut(s) | 397, 494 |
| HpyCH4IV | ACGT | 3 cut(s) | 216, 469, 544 |
| HpyCH4V | TGCA | 2 cut(s) | 401, 440 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 92, 101, 626, 737, 758 |
| HpyF3I | CTNAG | 3 cut(s) | 88, 414, 600 |
| HpySE526I | ACGT | 3 cut(s) | 216, 469, 544 |
| Hsp92I | GRCGYC | 1 cut(s) | 588 |
| Hsp92II | CATG | 2 cut(s) | 581, 744 |
| HspAI | GCGC | 1 cut(s) | 588 |
| KasI | GGCGCC | 1 cut(s) | 587 |
| Ksp22I | TGATCA | 1 cut(s) | 685 |
| Kzo9I | GATC | 5 cut(s) | 348, 447, 685, 781, 793 |
| LmnI | GCTCC | 1 cut(s) | 150 |
| LpnPI | CCDG | 9 cut(s) | 27, 79, 86, 161, 190, 242, 249, 426, 459 |
| Lsp1109I | GCAGC | 1 cut(s) | 95 |
| LweI | GCATC | 1 cut(s) | 607 |
| MaeI | CTAG | 3 cut(s) | 242, 392, 797 |
| MaeII | ACGT | 3 cut(s) | 216, 469, 544 |
| MaeIII | GTNAC | 5 cut(s) | 58, 221, 433, 503, 724 |
| MalI | GATC | 5 cut(s) | 350, 449, 687, 783, 795 |
| MboI | GATC | 5 cut(s) | 348, 447, 685, 781, 793 |
| MhlI | GDGCHC | 2 cut(s) | 697, 712 |
| MluCI | AATT | 1 cut(s) | 332 |
| Mly113I | GGCGCC | 1 cut(s) | 588 |
| MlyI | GAGTC | 2 cut(s) | 118, 370 |
| MnlI | CCTC | 6 cut(s) | 85, 272, 550, 554, 580, 642 |
| MroXI | GAANNNNTTC | 1 cut(s) | 309 |
| MseI | TTAA | 2 cut(s) | 318, 326 |
| MslI | CAYNNNNRTG | 4 cut(s) | 119, 135, 270, 582 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 92, 101, 626, 737, 758 |
| NarI | GGCGCC | 1 cut(s) | 588 |
| NdeI | CATATG | 1 cut(s) | 132 |
| NdeII | GATC | 5 cut(s) | 348, 447, 685, 781, 793 |
| NlaIII | CATG | 2 cut(s) | 581, 744 |
| NlaIV | GGNNCC | 2 cut(s) | 530, 589 |
| NmuCI | GTSAC | 3 cut(s) | 58, 221, 724 |
| NspI | RCATGY | 1 cut(s) | 744 |
| OliI | CACNNNNGTG | 1 cut(s) | 270 |
| PdmI | GAANNNNTTC | 1 cut(s) | 309 |
| PfeI | GAWTC | 1 cut(s) | 426 |
| PkrI | GCNGC | 1 cut(s) | 85 |
| PleI | GAGTC | 2 cut(s) | 118, 370 |
| PluTI | GGCGCC | 1 cut(s) | 591 |
| PpsI | GAGTC | 2 cut(s) | 118, 370 |
| Psp124BI | GAGCTC | 1 cut(s) | 712 |
| PspEI | GGTNACC | 1 cut(s) | 503 |
| PspN4I | GGNNCC | 2 cut(s) | 530, 589 |
| PspPI | GGNCC | 1 cut(s) | 476 |
| PstI | CTGCAG | 1 cut(s) | 442 |
| RsaI | GTAC | 1 cut(s) | 152 |
| RsaNI | GTAC | 1 cut(s) | 151 |
| RseI | CAYNNNNRTG | 4 cut(s) | 119, 135, 270, 582 |
| SacI | GAGCTC | 1 cut(s) | 712 |
| SaqAI | TTAA | 2 cut(s) | 318, 326 |
| SatI | GCNGC | 1 cut(s) | 84 |
| Sau3AI | GATC | 5 cut(s) | 348, 447, 685, 781, 793 |
| Sau96I | GGNCC | 1 cut(s) | 476 |
| SchI | GAGTC | 2 cut(s) | 118, 370 |
| SduI | GDGCHC | 2 cut(s) | 697, 712 |
| SfaNI | GCATC | 1 cut(s) | 607 |
| SfcI | CTRYAG | 1 cut(s) | 438 |
| SfoI | GGCGCC | 1 cut(s) | 589 |
| SinI | GGWCC | 1 cut(s) | 476 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 119, 135, 270, 582 |
| Sse9I | AATT | 1 cut(s) | 332 |
| SspDI | GGCGCC | 1 cut(s) | 587 |
| SspMI | CTAG | 3 cut(s) | 242, 392, 797 |
| SstI | GAGCTC | 1 cut(s) | 712 |
| TaiI | ACGT | 3 cut(s) | 219, 472, 547 |
| TaqI | TCGA | 6 cut(s) | 35, 198, 424, 429, 648, 670 |
| TasI | AATT | 1 cut(s) | 332 |
| TfiI | GAWTC | 1 cut(s) | 426 |
| Tru1I | TTAA | 2 cut(s) | 318, 326 |
| Tru9I | TTAA | 2 cut(s) | 318, 326 |
| TscAI | CASTG | 1 cut(s) | 733 |
| TseFI | GTSAC | 3 cut(s) | 58, 221, 724 |
| TseI | GCWGC | 1 cut(s) | 83 |
| Tsp45I | GTSAC | 3 cut(s) | 58, 221, 724 |
| TspDTI | ATGAA | 3 cut(s) | 17, 176, 180 |
| TspGWI | ACGGA | 4 cut(s) | 46, 209, 460, 541 |
| TspRI | CASTG | 1 cut(s) | 733 |
| VpaK11BI | GGWCC | 1 cut(s) | 476 |
| XapI | RAATTY | 1 cut(s) | 332 |
| XbaI | TCTAGA | 1 cut(s) | 796 |
| XceI | RCATGY | 1 cut(s) | 744 |
| XmnI | GAANNNNTTC | 1 cut(s) | 309 |
| XspI | CTAG | 3 cut(s) | 242, 392, 797 |