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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 91 |
| AccII | CGCG | 1 cut(s) | 555 |
| AciI | CCGC | 4 cut(s) | 546, 555, 621, 663 |
| AclWI | GGATC | 2 cut(s) | 111, 491 |
| AcoI | YGGCCR | 1 cut(s) | 627 |
| AcuI | CTGAAG | 1 cut(s) | 486 |
| AcyI | GRCGYC | 2 cut(s) | 160, 569 |
| AfaI | GTAC | 1 cut(s) | 463 |
| AfeI | AGCGCT | 2 cut(s) | 228, 239 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 34 |
| AgsI | TTSAA | 5 cut(s) | 66, 277, 284, 316, 329 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 383, 573 |
| AjnI | CCWGG | 1 cut(s) | 87 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 225, 257 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 95, 127 |
| AluBI | AGCT | 3 cut(s) | 217, 400, 502 |
| AluI | AGCT | 3 cut(s) | 217, 400, 502 |
| Alw26I | GTCTC | 2 cut(s) | 563, 581 |
| AlwI | GGATC | 2 cut(s) | 111, 491 |
| Aor51HI | AGCGCT | 2 cut(s) | 228, 239 |
| AoxI | GGCC | 1 cut(s) | 627 |
| AspLEI | GCGC | 3 cut(s) | 229, 240, 303 |
| AspS9I | GGNCC | 1 cut(s) | 623 |
| AsuC2I | CCSGG | 1 cut(s) | 101 |
| AvaII | GGWCC | 1 cut(s) | 623 |
| BanI | GGYRCC | 1 cut(s) | 91 |
| BauI | CACGAG | 2 cut(s) | 487, 580 |
| BbsI | GAAGAC | 2 cut(s) | 416, 548 |
| BccI | CCATC | 2 cut(s) | 63, 638 |
| BciT130I | CCWGG | 1 cut(s) | 89 |
| BcnI | CCSGG | 1 cut(s) | 101 |
| BcoDI | GTCTC | 2 cut(s) | 563, 581 |
| BfaI | CTAG | 1 cut(s) | 230 |
| BfoI | RGCGCY | 2 cut(s) | 230, 241 |
| Bme1390I | CCNGG | 2 cut(s) | 89, 101 |
| Bme18I | GGWCC | 1 cut(s) | 623 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 383, 573 |
| BmgT120I | GGNCC | 1 cut(s) | 623 |
| BmiI | GGNNCC | 1 cut(s) | 93 |
| BmrFI | CCNGG | 2 cut(s) | 89, 101 |
| BmsI | GCATC | 2 cut(s) | 144, 196 |
| BpiI | GAAGAC | 2 cut(s) | 416, 548 |
| BpuEI | CTTGAG | 1 cut(s) | 123 |
| BpuMI | CCSGG | 1 cut(s) | 101 |
| BsaHI | GRCGYC | 2 cut(s) | 160, 569 |
| BsaI | GGTCTC | 1 cut(s) | 563 |
| BsaJI | CCNNGG | 1 cut(s) | 611 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 179, 209, 543, 573, 607, 637 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 34 |
| Bse3DI | GCAATG | 1 cut(s) | 253 |
| BseBI | CCWGG | 1 cut(s) | 89 |
| BseDI | CCNNGG | 1 cut(s) | 611 |
| BseGI | GGATG | 2 cut(s) | 114, 211 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 34 |
| BseMI | GCAATG | 1 cut(s) | 253 |
| BseRI | GAGGAG | 1 cut(s) | 254 |
| Bsh1236I | CGCG | 1 cut(s) | 555 |
| BshFI | GGCC | 1 cut(s) | 629 |
| BshNI | GGYRCC | 1 cut(s) | 91 |
| BsiSI | CCGG | 3 cut(s) | 101, 626, 666 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 34 |
| BsmAI | GTCTC | 2 cut(s) | 563, 581 |
| BsnI | GGCC | 1 cut(s) | 629 |
| Bso31I | GGTCTC | 1 cut(s) | 563 |
| Bsp143I | GATC | 3 cut(s) | 103, 198, 483 |
| BspACI | CCGC | 4 cut(s) | 546, 555, 621, 663 |
| BspANI | GGCC | 1 cut(s) | 629 |
| BspFNI | CGCG | 1 cut(s) | 555 |
| BspLI | GGNNCC | 1 cut(s) | 93 |
| BspPI | GGATC | 2 cut(s) | 111, 491 |
| BspQI | GCTCTTC | 2 cut(s) | 228, 351 |
| BspT107I | GGYRCC | 1 cut(s) | 91 |
| BspTNI | GGTCTC | 1 cut(s) | 563 |
| BsrDI | GCAATG | 1 cut(s) | 253 |
| BssECI | CCNNGG | 1 cut(s) | 611 |
| BssMI | GATC | 3 cut(s) | 103, 198, 483 |
| BssNI | GRCGYC | 2 cut(s) | 160, 569 |
| BssSI | CACGAG | 2 cut(s) | 487, 580 |
| Bst2BI | CACGAG | 2 cut(s) | 487, 580 |
| Bst2UI | CCWGG | 1 cut(s) | 89 |
| Bst4CI | ACNGT | 1 cut(s) | 32 |
| Bst6I | CTCTTC | 2 cut(s) | 228, 351 |
| BstACI | GRCGYC | 2 cut(s) | 160, 569 |
| BstC8I | GCNNGC | 2 cut(s) | 135, 593 |
| BstDEI | CTNAG | 1 cut(s) | 523 |
| BstEII | GGTNACC | 1 cut(s) | 37 |
| BstF5I | GGATG | 2 cut(s) | 114, 211 |
| BstFNI | CGCG | 1 cut(s) | 555 |
| BstH2I | RGCGCY | 2 cut(s) | 230, 241 |
| BstHHI | GCGC | 3 cut(s) | 229, 240, 303 |
| BstKTI | GATC | 3 cut(s) | 106, 201, 486 |
| BstMAI | GTCTC | 2 cut(s) | 563, 581 |
| BstMBI | GATC | 3 cut(s) | 103, 198, 483 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 235 |
| BstNI | CCWGG | 1 cut(s) | 89 |
| BstNSI | RCATGY | 1 cut(s) | 137 |
| BstPI | GGTNACC | 1 cut(s) | 37 |
| BstSCI | CCNGG | 2 cut(s) | 87, 99 |
| BstUI | CGCG | 1 cut(s) | 555 |
| BstV2I | GAAGAC | 2 cut(s) | 416, 548 |
| BstX2I | RGATCY | 1 cut(s) | 103 |
| BstYI | RGATCY | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 629 |
| BtsCI | GGATG | 2 cut(s) | 114, 211 |
| Cac8I | GCNNGC | 2 cut(s) | 135, 593 |
| CfoI | GCGC | 3 cut(s) | 229, 240, 303 |
| Cfr13I | GGNCC | 1 cut(s) | 623 |
| CpoI | CGGWCCG | 1 cut(s) | 623 |
| CseI | GACGC | 2 cut(s) | 168, 577 |
| Csp6I | GTAC | 1 cut(s) | 462 |
| CspI | CGGWCCG | 1 cut(s) | 623 |
| CviAII | CATG | 2 cut(s) | 134, 361 |
| CviJI | RGCY | 8 cut(s) | 18, 217, 344, 400, 437, 502, 629, 659 |
| CviKI_1 | RGCY | 8 cut(s) | 18, 217, 344, 400, 437, 502, 629, 659 |
| CviQI | GTAC | 1 cut(s) | 462 |
| DdeI | CTNAG | 1 cut(s) | 523 |
| DpnI | GATC | 3 cut(s) | 105, 200, 485 |
| DpnII | GATC | 3 cut(s) | 103, 198, 483 |
| DriI | GACNNNNNGTC | 2 cut(s) | 383, 573 |
| EaeI | YGGCCR | 1 cut(s) | 627 |
| Eam1104I | CTCTTC | 2 cut(s) | 228, 351 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 383, 573 |
| EarI | CTCTTC | 2 cut(s) | 228, 351 |
| Eco31I | GGTCTC | 1 cut(s) | 563 |
| Eco47I | GGWCC | 1 cut(s) | 623 |
| Eco47III | AGCGCT | 2 cut(s) | 228, 239 |
| Eco57I | CTGAAG | 1 cut(s) | 486 |
| Eco91I | GGTNACC | 1 cut(s) | 37 |
| EcoO65I | GGTNACC | 1 cut(s) | 37 |
| EcoRII | CCWGG | 1 cut(s) | 87 |
| FaeI | CATG | 2 cut(s) | 137, 364 |
| FaiI | YATR | 9 cut(s) | 83, 135, 165, 167, 192, 194, 220, 333, 362 |
| FatI | CATG | 2 cut(s) | 133, 360 |
| FauNDI | CATATG | 1 cut(s) | 165 |
| FokI | GGATG | 2 cut(s) | 101, 218 |
| FspBI | CTAG | 1 cut(s) | 230 |
| GlaI | GCGC | 3 cut(s) | 228, 239, 302 |
| HaeII | RGCGCY | 2 cut(s) | 230, 241 |
| HaeIII | GGCC | 1 cut(s) | 629 |
| HapII | CCGG | 3 cut(s) | 101, 626, 666 |
| HgaI | GACGC | 2 cut(s) | 168, 577 |
| HhaI | GCGC | 3 cut(s) | 229, 240, 303 |
| Hin1I | GRCGYC | 2 cut(s) | 160, 569 |
| Hin1II | CATG | 2 cut(s) | 137, 364 |
| Hin6I | GCGC | 3 cut(s) | 227, 238, 301 |
| HinP1I | GCGC | 3 cut(s) | 227, 238, 301 |
| HinfI | GANTC | 5 cut(s) | 8, 257, 369, 412, 653 |
| HpaII | CCGG | 3 cut(s) | 101, 626, 666 |
| Hpy166II | GTNNAC | 1 cut(s) | 377 |
| Hpy188I | TCNGA | 5 cut(s) | 22, 119, 340, 567, 615 |
| Hpy188III | TCNNGA | 2 cut(s) | 151, 487 |
| Hpy8I | GTNNAC | 1 cut(s) | 377 |
| Hpy99I | CGWCG | 1 cut(s) | 162 |
| HpyAV | CCTTC | 2 cut(s) | 271, 433 |
| HpyCH4III | ACNGT | 1 cut(s) | 32 |
| HpyCH4V | TGCA | 1 cut(s) | 209 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 235 |
| HpyF3I | CTNAG | 1 cut(s) | 523 |
| Hsp92I | GRCGYC | 2 cut(s) | 160, 569 |
| Hsp92II | CATG | 2 cut(s) | 137, 364 |
| HspAI | GCGC | 3 cut(s) | 227, 238, 301 |
| Kzo9I | GATC | 3 cut(s) | 103, 198, 483 |
| LguI | GCTCTTC | 2 cut(s) | 228, 351 |
| LpnPI | CCDG | 9 cut(s) | 74, 101, 114, 282, 396, 462, 586, 639, 651 |
| LweI | GCATC | 2 cut(s) | 144, 196 |
| MaeI | CTAG | 1 cut(s) | 230 |
| MaeIII | GTNAC | 2 cut(s) | 37, 385 |
| MalI | GATC | 3 cut(s) | 105, 200, 485 |
| MboI | GATC | 3 cut(s) | 103, 198, 483 |
| MboII | GAAGA | 5 cut(s) | 245, 338, 421, 553, 662 |
| MflI | RGATCY | 1 cut(s) | 103 |
| MluCI | AATT | 3 cut(s) | 182, 334, 402 |
| MlyI | GAGTC | 2 cut(s) | 2, 406 |
| MnlI | CCTC | 6 cut(s) | 272, 275, 334, 483, 573, 621 |
| MseI | TTAA | 1 cut(s) | 644 |
| MspI | CCGG | 3 cut(s) | 101, 626, 666 |
| MspR9I | CCNGG | 2 cut(s) | 89, 101 |
| MvaI | CCWGG | 1 cut(s) | 89 |
| MvnI | CGCG | 1 cut(s) | 555 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 235 |
| NciI | CCSGG | 1 cut(s) | 101 |
| NdeI | CATATG | 1 cut(s) | 165 |
| NdeII | GATC | 3 cut(s) | 103, 198, 483 |
| NlaIII | CATG | 2 cut(s) | 137, 364 |
| NlaIV | GGNNCC | 1 cut(s) | 93 |
| NmuCI | GTSAC | 1 cut(s) | 385 |
| NspI | RCATGY | 1 cut(s) | 137 |
| PaeI | GCATGC | 1 cut(s) | 137 |
| PciSI | GCTCTTC | 2 cut(s) | 228, 351 |
| PfeI | GAWTC | 3 cut(s) | 257, 369, 653 |
| PleI | GAGTC | 2 cut(s) | 2, 406 |
| PpsI | GAGTC | 2 cut(s) | 2, 406 |
| Psp6I | CCWGG | 1 cut(s) | 87 |
| PspEI | GGTNACC | 1 cut(s) | 37 |
| PspGI | CCWGG | 1 cut(s) | 87 |
| PspN4I | GGNNCC | 1 cut(s) | 93 |
| PspPI | GGNCC | 1 cut(s) | 623 |
| PsuI | RGATCY | 1 cut(s) | 103 |
| RsaI | GTAC | 1 cut(s) | 463 |
| RsaNI | GTAC | 1 cut(s) | 462 |
| Rsr2I | CGGWCCG | 1 cut(s) | 623 |
| RsrII | CGGWCCG | 1 cut(s) | 623 |
| SapI | GCTCTTC | 2 cut(s) | 228, 351 |
| SaqAI | TTAA | 1 cut(s) | 644 |
| Sau3AI | GATC | 3 cut(s) | 103, 198, 483 |
| Sau96I | GGNCC | 1 cut(s) | 623 |
| SchI | GAGTC | 2 cut(s) | 2, 406 |
| ScrFI | CCNGG | 2 cut(s) | 89, 101 |
| SetI | ASST | 8 cut(s) | 97, 219, 282, 385, 402, 425, 494, 504 |
| SfaNI | GCATC | 2 cut(s) | 144, 196 |
| SinI | GGWCC | 1 cut(s) | 623 |
| SmlI | CTYRAG | 1 cut(s) | 138 |
| SmoI | CTYRAG | 1 cut(s) | 138 |
| SphI | GCATGC | 1 cut(s) | 137 |
| Sse9I | AATT | 3 cut(s) | 182, 334, 402 |
| SsiI | CCGC | 4 cut(s) | 546, 555, 621, 663 |
| SspI | AATATT | 2 cut(s) | 75, 511 |
| SspMI | CTAG | 1 cut(s) | 230 |
| StyD4I | CCNGG | 2 cut(s) | 87, 99 |
| TaaI | ACNGT | 1 cut(s) | 32 |
| TaqI | TCGA | 2 cut(s) | 197, 633 |
| TasI | AATT | 3 cut(s) | 182, 334, 402 |
| TfiI | GAWTC | 3 cut(s) | 257, 369, 653 |
| Tru1I | TTAA | 1 cut(s) | 644 |
| Tru9I | TTAA | 1 cut(s) | 644 |
| TseFI | GTSAC | 1 cut(s) | 385 |
| Tsp45I | GTSAC | 1 cut(s) | 385 |
| TspDTI | ATGAA | 2 cut(s) | 103, 485 |
| TspGWI | ACGGA | 1 cut(s) | 496 |
| VpaK11BI | GGWCC | 1 cut(s) | 623 |
| XceI | RCATGY | 1 cut(s) | 137 |
| XspI | CTAG | 1 cut(s) | 230 |