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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 794 |
| Acc36I | ACCTGC | 1 cut(s) | 223 |
| AccII | CGCG | 1 cut(s) | 953 |
| AciI | CCGC | 5 cut(s) | 153, 156, 387, 491, 1075 |
| AclWI | GGATC | 3 cut(s) | 811, 823, 824 |
| AcoI | YGGCCR | 3 cut(s) | 236, 529, 540 |
| AcsI | RAATTY | 4 cut(s) | 57, 67, 646, 1142 |
| AcuI | CTGAAG | 1 cut(s) | 1134 |
| AfaI | GTAC | 2 cut(s) | 968, 1098 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 241, 515, 538, 778, 976 |
| AflII | CTTAAG | 1 cut(s) | 803 |
| AflIII | ACRYGT | 1 cut(s) | 86 |
| AgsI | TTSAA | 6 cut(s) | 137, 167, 232, 594, 881, 1090 |
| AjiI | CACGTC | 5 cut(s) | 407, 442, 461, 480, 850 |
| AjnI | CCWGG | 3 cut(s) | 142, 179, 358 |
| AluBI | AGCT | 7 cut(s) | 293, 338, 738, 869, 893, 914, 1015 |
| AluI | AGCT | 7 cut(s) | 293, 338, 738, 869, 893, 914, 1015 |
| Alw26I | GTCTC | 3 cut(s) | 20, 513, 746 |
| AlwI | GGATC | 3 cut(s) | 811, 823, 824 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 215, 338, 488 |
| Ama87I | CYCGRG | 1 cut(s) | 1007 |
| AoxI | GGCC | 4 cut(s) | 236, 258, 529, 540 |
| ApeKI | GCWGC | 2 cut(s) | 202, 1012 |
| ApoI | RAATTY | 4 cut(s) | 57, 67, 646, 1142 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1119 |
| AspLEI | GCGC | 5 cut(s) | 202, 487, 764, 795, 955 |
| AspS9I | GGNCC | 1 cut(s) | 781 |
| AsuC2I | CCSGG | 1 cut(s) | 470 |
| AsuHPI | GGTGA | 2 cut(s) | 166, 370 |
| AvaI | CYCGRG | 1 cut(s) | 1007 |
| AvaII | GGWCC | 1 cut(s) | 781 |
| BamHI | GGATCC | 1 cut(s) | 816 |
| BanII | GRGCYC | 1 cut(s) | 188 |
| BbsI | GAAGAC | 1 cut(s) | 987 |
| BbvI | GCAGC | 2 cut(s) | 189, 1024 |
| BccI | CCATC | 7 cut(s) | 306, 331, 383, 806, 929, 1056, 1132 |
| BceAI | ACGGC | 1 cut(s) | 213 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 184, 218 |
| BciT130I | CCWGG | 3 cut(s) | 144, 181, 360 |
| BcnI | CCSGG | 1 cut(s) | 470 |
| BcoDI | GTCTC | 3 cut(s) | 20, 513, 746 |
| BfaI | CTAG | 3 cut(s) | 290, 749, 1046 |
| BfoI | RGCGCY | 2 cut(s) | 203, 488 |
| BfrI | CTTAAG | 1 cut(s) | 803 |
| BfuAI | ACCTGC | 1 cut(s) | 223 |
| BglII | AGATCT | 1 cut(s) | 279 |
| BisI | GCNGC | 3 cut(s) | 156, 203, 1013 |
| BlsI | GCNGC | 3 cut(s) | 157, 204, 1014 |
| Bme1390I | CCNGG | 4 cut(s) | 144, 181, 360, 470 |
| Bme18I | GGWCC | 1 cut(s) | 781 |
| BmeT110I | CYCGRG | 1 cut(s) | 1007 |
| BmgBI | CACGTC | 5 cut(s) | 407, 442, 461, 480, 850 |
| BmgT120I | GGNCC | 1 cut(s) | 781 |
| BmiI | GGNNCC | 6 cut(s) | 148, 185, 364, 385, 782, 818 |
| BmrFI | CCNGG | 4 cut(s) | 144, 181, 360, 470 |
| BmsI | GCATC | 2 cut(s) | 421, 808 |
| BpiI | GAAGAC | 1 cut(s) | 987 |
| BpmI | CTGGAG | 3 cut(s) | 163, 192, 342 |
| BpuMI | CCSGG | 1 cut(s) | 470 |
| BsaI | GGTCTC | 1 cut(s) | 20 |
| BsaJI | CCNNGG | 1 cut(s) | 142 |
| BsaWI | WCCGGW | 2 cut(s) | 380, 568 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 241, 515, 538, 778, 976 |
| Bse118I | RCCGGY | 4 cut(s) | 234, 256, 500, 542 |
| Bse1I | ACTGG | 3 cut(s) | 72, 305, 416 |
| BseBI | CCWGG | 3 cut(s) | 144, 181, 360 |
| BseDI | CCNNGG | 1 cut(s) | 142 |
| BseGI | GGATG | 2 cut(s) | 412, 720 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 241, 515, 538, 778, 976 |
| BseMII | CTCAG | 3 cut(s) | 620, 655, 812 |
| BseNI | ACTGG | 3 cut(s) | 72, 305, 416 |
| BseX3I | CGGCCG | 1 cut(s) | 540 |
| BseXI | GCAGC | 2 cut(s) | 189, 1024 |
| Bsh1236I | CGCG | 1 cut(s) | 953 |
| Bsh1285I | CGRYCG | 1 cut(s) | 543 |
| BshFI | GGCC | 4 cut(s) | 238, 260, 531, 542 |
| BsiEI | CGRYCG | 1 cut(s) | 543 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1007 |
| BslFI | GGGAC | 1 cut(s) | 333 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 241, 515, 538, 778, 976 |
| BsmAI | GTCTC | 3 cut(s) | 20, 513, 746 |
| BsmFI | GGGAC | 1 cut(s) | 333 |
| BsnI | GGCC | 4 cut(s) | 238, 260, 531, 542 |
| Bso31I | GGTCTC | 1 cut(s) | 20 |
| BsoBI | CYCGRG | 1 cut(s) | 1007 |
| Bsp1286I | GDGCHC | 1 cut(s) | 188 |
| Bsp143I | GATC | 3 cut(s) | 279, 816, 828 |
| BspACI | CCGC | 5 cut(s) | 153, 156, 387, 491, 1075 |
| BspANI | GGCC | 4 cut(s) | 238, 260, 531, 542 |
| BspCNI | CTCAG | 3 cut(s) | 619, 654, 813 |
| BspFNI | CGCG | 1 cut(s) | 953 |
| BspHI | TCATGA | 1 cut(s) | 930 |
| BspLI | GGNNCC | 6 cut(s) | 148, 185, 364, 385, 782, 818 |
| BspMI | ACCTGC | 1 cut(s) | 223 |
| BspPI | GGATC | 3 cut(s) | 811, 823, 824 |
| BspTI | CTTAAG | 1 cut(s) | 803 |
| BspTNI | GGTCTC | 1 cut(s) | 20 |
| BsrFI | RCCGGY | 4 cut(s) | 234, 256, 500, 542 |
| BsrI | ACTGG | 3 cut(s) | 72, 305, 416 |
| BssAI | RCCGGY | 4 cut(s) | 234, 256, 500, 542 |
| BssECI | CCNNGG | 1 cut(s) | 142 |
| BssMI | GATC | 3 cut(s) | 279, 816, 828 |
| Bst2UI | CCWGG | 3 cut(s) | 144, 181, 360 |
| Bst6I | CTCTTC | 2 cut(s) | 240, 678 |
| BstAFI | CTTAAG | 1 cut(s) | 803 |
| BstC8I | GCNNGC | 4 cut(s) | 295, 436, 489, 797 |
| BstDEI | CTNAG | 5 cut(s) | 606, 641, 821, 894, 1051 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 513, 974 |
| BstF5I | GGATG | 2 cut(s) | 412, 720 |
| BstFNI | CGCG | 1 cut(s) | 953 |
| BstH2I | RGCGCY | 2 cut(s) | 203, 488 |
| BstHHI | GCGC | 5 cut(s) | 202, 487, 764, 795, 955 |
| BstKTI | GATC | 3 cut(s) | 282, 819, 831 |
| BstMAI | GTCTC | 3 cut(s) | 20, 513, 746 |
| BstMBI | GATC | 3 cut(s) | 279, 816, 828 |
| BstMCI | CGRYCG | 1 cut(s) | 543 |
| BstNI | CCWGG | 3 cut(s) | 144, 181, 360 |
| BstNSI | RCATGY | 1 cut(s) | 90 |
| BstSCI | CCNGG | 4 cut(s) | 142, 179, 358, 468 |
| BstUI | CGCG | 1 cut(s) | 953 |
| BstV1I | GCAGC | 2 cut(s) | 189, 1024 |
| BstV2I | GAAGAC | 1 cut(s) | 987 |
| BstX2I | RGATCY | 2 cut(s) | 279, 816 |
| BstYI | RGATCY | 2 cut(s) | 279, 816 |
| BstZI | CGGCCG | 1 cut(s) | 540 |
| BsuRI | GGCC | 4 cut(s) | 238, 260, 531, 542 |
| BtrI | CACGTC | 5 cut(s) | 407, 442, 461, 480, 850 |
| BtsCI | GGATG | 2 cut(s) | 412, 720 |
| BtsI | GCAGTG | 1 cut(s) | 317 |
| BtsIMutI | CAGTG | 1 cut(s) | 317 |
| BveI | ACCTGC | 1 cut(s) | 223 |
| Cac8I | GCNNGC | 4 cut(s) | 295, 436, 489, 797 |
| CaiI | CAGNNNCTG | 3 cut(s) | 215, 338, 488 |
| CciI | TCATGA | 1 cut(s) | 930 |
| CfoI | GCGC | 5 cut(s) | 202, 487, 764, 795, 955 |
| Cfr10I | RCCGGY | 4 cut(s) | 234, 256, 500, 542 |
| Cfr13I | GGNCC | 1 cut(s) | 781 |
| CseI | GACGC | 2 cut(s) | 412, 959 |
| Csp6I | GTAC | 2 cut(s) | 967, 1097 |
| CviAII | CATG | 3 cut(s) | 87, 931, 943 |
| CviQI | GTAC | 2 cut(s) | 967, 1097 |
| DdeI | CTNAG | 5 cut(s) | 606, 641, 821, 894, 1051 |
| DpnI | GATC | 3 cut(s) | 281, 818, 830 |
| DpnII | GATC | 3 cut(s) | 279, 816, 828 |
| EaeI | YGGCCR | 3 cut(s) | 236, 529, 540 |
| EagI | CGGCCG | 1 cut(s) | 540 |
| Eam1104I | CTCTTC | 2 cut(s) | 240, 678 |
| EarI | CTCTTC | 2 cut(s) | 240, 678 |
| EclXI | CGGCCG | 1 cut(s) | 540 |
| Eco24I | GRGCYC | 1 cut(s) | 188 |
| Eco31I | GGTCTC | 1 cut(s) | 20 |
| Eco47I | GGWCC | 1 cut(s) | 781 |
| Eco52I | CGGCCG | 1 cut(s) | 540 |
| Eco57I | CTGAAG | 1 cut(s) | 1134 |
| Eco88I | CYCGRG | 1 cut(s) | 1007 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 513, 974 |
| EcoRI | GAATTC | 1 cut(s) | 1142 |
| EcoRII | CCWGG | 3 cut(s) | 142, 179, 358 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 188 |
| FaeI | CATG | 3 cut(s) | 90, 934, 946 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 722, 754 |
| FaqI | GGGAC | 1 cut(s) | 333 |
| FatI | CATG | 3 cut(s) | 86, 930, 942 |
| Fnu4HI | GCNGC | 3 cut(s) | 156, 203, 1013 |
| FokI | GGATG | 2 cut(s) | 399, 727 |
| FriOI | GRGCYC | 1 cut(s) | 188 |
| Fsp4HI | GCNGC | 3 cut(s) | 156, 203, 1013 |
| FspBI | CTAG | 3 cut(s) | 290, 749, 1046 |
| FspI | TGCGCA | 1 cut(s) | 794 |
| GlaI | GCGC | 5 cut(s) | 201, 486, 763, 794, 954 |
| GluI | GCNGC | 3 cut(s) | 156, 203, 1013 |
| GsuI | CTGGAG | 3 cut(s) | 163, 192, 342 |
| HaeII | RGCGCY | 2 cut(s) | 203, 488 |
| HaeIII | GGCC | 4 cut(s) | 238, 260, 531, 542 |
| HgaI | GACGC | 2 cut(s) | 412, 959 |
| HhaI | GCGC | 5 cut(s) | 202, 487, 764, 795, 955 |
| Hin1II | CATG | 3 cut(s) | 90, 934, 946 |
| Hin6I | GCGC | 5 cut(s) | 200, 485, 762, 793, 953 |
| HinP1I | GCGC | 5 cut(s) | 200, 485, 762, 793, 953 |
| HincII | GTYRAC | 2 cut(s) | 496, 506 |
| HindII | GTYRAC | 2 cut(s) | 496, 506 |
| HinfI | GANTC | 4 cut(s) | 222, 272, 355, 1034 |
| HphI | GGTGA | 2 cut(s) | 166, 370 |
| Hpy166II | GTNNAC | 3 cut(s) | 310, 496, 506 |
| Hpy188I | TCNGA | 5 cut(s) | 277, 609, 644, 682, 1114 |
| Hpy188III | TCNNGA | 6 cut(s) | 209, 516, 820, 845, 931, 1046 |
| Hpy8I | GTNNAC | 3 cut(s) | 310, 496, 506 |
| Hpy99I | CGWCG | 1 cut(s) | 199 |
| HpyAV | CCTTC | 1 cut(s) | 143 |
| HpyCH4IV | ACGT | 6 cut(s) | 406, 441, 460, 479, 849, 1026 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 317 |
| HpyF3I | CTNAG | 5 cut(s) | 606, 641, 821, 894, 1051 |
| HpySE526I | ACGT | 6 cut(s) | 406, 441, 460, 479, 849, 1026 |
| Hsp92II | CATG | 3 cut(s) | 90, 934, 946 |
| HspAI | GCGC | 5 cut(s) | 200, 485, 762, 793, 953 |
| Kzo9I | GATC | 3 cut(s) | 279, 816, 828 |
| LmnI | GCTCC | 4 cut(s) | 183, 683, 748, 960 |
| Lsp1109I | GCAGC | 2 cut(s) | 189, 1024 |
| LweI | GCATC | 2 cut(s) | 421, 808 |
| MaeI | CTAG | 3 cut(s) | 290, 749, 1046 |
| MaeII | ACGT | 6 cut(s) | 406, 441, 460, 479, 849, 1026 |
| MaeIII | GTNAC | 2 cut(s) | 545, 719 |
| MalI | GATC | 3 cut(s) | 281, 818, 830 |
| MboI | GATC | 3 cut(s) | 279, 816, 828 |
| MboII | GAAGA | 5 cut(s) | 257, 281, 293, 665, 992 |
| MflI | RGATCY | 2 cut(s) | 279, 816 |
| MhlI | GDGCHC | 1 cut(s) | 188 |
| MluCI | AATT | 7 cut(s) | 57, 67, 586, 619, 646, 1108, 1142 |
| MlyI | GAGTC | 1 cut(s) | 349 |
| MmeI | TCCRAC | 1 cut(s) | 584 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1119 |
| MseI | TTAA | 2 cut(s) | 710, 804 |
| MslI | CAYNNNNRTG | 2 cut(s) | 929, 945 |
| MspCI | CTTAAG | 1 cut(s) | 803 |
| MspR9I | CCNGG | 4 cut(s) | 144, 181, 360, 470 |
| MvaI | CCWGG | 3 cut(s) | 144, 181, 360 |
| MvnI | CGCG | 1 cut(s) | 953 |
| NciI | CCSGG | 1 cut(s) | 470 |
| NdeII | GATC | 3 cut(s) | 279, 816, 828 |
| NlaIII | CATG | 3 cut(s) | 90, 934, 946 |
| NlaIV | GGNNCC | 6 cut(s) | 148, 185, 364, 385, 782, 818 |
| NmuCI | GTSAC | 1 cut(s) | 545 |
| NsbI | TGCGCA | 1 cut(s) | 794 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 90 |
| PaeR7I | CTCGAG | 1 cut(s) | 1007 |
| PagI | TCATGA | 1 cut(s) | 930 |
| PciI | ACATGT | 1 cut(s) | 86 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1119 |
| PfeI | GAWTC | 3 cut(s) | 222, 272, 1034 |
| PfoI | TCCNGGA | 2 cut(s) | 179, 358 |
| PkrI | GCNGC | 3 cut(s) | 157, 204, 1014 |
| PleI | GAGTC | 1 cut(s) | 349 |
| PpsI | GAGTC | 1 cut(s) | 349 |
| PscI | ACATGT | 1 cut(s) | 86 |
| Psp6I | CCWGG | 3 cut(s) | 142, 179, 358 |
| PspGI | CCWGG | 3 cut(s) | 142, 179, 358 |
| PspN4I | GGNNCC | 6 cut(s) | 148, 185, 364, 385, 782, 818 |
| PspPI | GGNCC | 1 cut(s) | 781 |
| PspXI | VCTCGAGB | 1 cut(s) | 1007 |
| PstNI | CAGNNNCTG | 3 cut(s) | 215, 338, 488 |
| PsuI | RGATCY | 2 cut(s) | 279, 816 |
| RsaI | GTAC | 2 cut(s) | 968, 1098 |
| RsaNI | GTAC | 2 cut(s) | 967, 1097 |
| RseI | CAYNNNNRTG | 2 cut(s) | 929, 945 |
| SaqAI | TTAA | 2 cut(s) | 710, 804 |
| SatI | GCNGC | 3 cut(s) | 156, 203, 1013 |
| Sau3AI | GATC | 3 cut(s) | 279, 816, 828 |
| Sau96I | GGNCC | 1 cut(s) | 781 |
| SchI | GAGTC | 1 cut(s) | 349 |
| ScrFI | CCNGG | 4 cut(s) | 144, 181, 360, 470 |
| SduI | GDGCHC | 1 cut(s) | 188 |
| SfaNI | GCATC | 2 cut(s) | 421, 808 |
| Sfr274I | CTCGAG | 1 cut(s) | 1007 |
| SinI | GGWCC | 1 cut(s) | 781 |
| SlaI | CTCGAG | 1 cut(s) | 1007 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 929, 945 |
| SmlI | CTYRAG | 2 cut(s) | 803, 1007 |
| SmoI | CTYRAG | 2 cut(s) | 803, 1007 |
| Sse9I | AATT | 7 cut(s) | 57, 67, 586, 619, 646, 1108, 1142 |
| SsiI | CCGC | 5 cut(s) | 153, 156, 387, 491, 1075 |
| SspMI | CTAG | 3 cut(s) | 290, 749, 1046 |
| StyD4I | CCNGG | 4 cut(s) | 142, 179, 358, 468 |
| TaiI | ACGT | 6 cut(s) | 409, 444, 463, 482, 852, 1029 |
| TaqI | TCGA | 2 cut(s) | 225, 1008 |
| TasI | AATT | 7 cut(s) | 57, 67, 586, 619, 646, 1108, 1142 |
| TatI | WGTACW | 1 cut(s) | 1096 |
| TauI | GCSGC | 1 cut(s) | 158 |
| TfiI | GAWTC | 3 cut(s) | 222, 272, 1034 |
| Tru1I | TTAA | 2 cut(s) | 710, 804 |
| Tru9I | TTAA | 2 cut(s) | 710, 804 |
| TscAI | CASTG | 1 cut(s) | 324 |
| TseFI | GTSAC | 1 cut(s) | 545 |
| TseI | GCWGC | 2 cut(s) | 202, 1012 |
| Tsp45I | GTSAC | 1 cut(s) | 545 |
| TspDTI | ATGAA | 3 cut(s) | 386, 924, 959 |
| TspGWI | ACGGA | 3 cut(s) | 545, 773, 1019 |
| TspRI | CASTG | 1 cut(s) | 324 |
| Vha464I | CTTAAG | 1 cut(s) | 803 |
| VpaK11BI | GGWCC | 1 cut(s) | 781 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 513, 974 |
| XapI | RAATTY | 4 cut(s) | 57, 67, 646, 1142 |
| XbaI | TCTAGA | 1 cut(s) | 1045 |
| XceI | RCATGY | 1 cut(s) | 90 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 993 |
| XhoI | CTCGAG | 1 cut(s) | 1007 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1119 |
| XspI | CTAG | 3 cut(s) | 290, 749, 1046 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |