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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 447, 605 |
| AccI | GTMKAC | 1 cut(s) | 476 |
| AccIII | TCCGGA | 1 cut(s) | 412 |
| AciI | CCGC | 1 cut(s) | 145 |
| AclWI | GGATC | 2 cut(s) | 384, 488 |
| AcoI | YGGCCR | 1 cut(s) | 592 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcyI | GRCGYC | 1 cut(s) | 448 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AflIII | ACRYGT | 1 cut(s) | 406 |
| AgsI | TTSAA | 2 cut(s) | 160, 643 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 2 cut(s) | 335, 728 |
| AluI | AGCT | 2 cut(s) | 335, 728 |
| Alw21I | GWGCWC | 1 cut(s) | 730 |
| Alw26I | GTCTC | 2 cut(s) | 76, 280 |
| AlwI | GGATC | 2 cut(s) | 384, 488 |
| Aor13HI | TCCGGA | 1 cut(s) | 412 |
| AoxI | GGCC | 1 cut(s) | 592 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 189, 408 |
| AspLEI | GCGC | 2 cut(s) | 450, 649 |
| BaeGI | GKGCMC | 1 cut(s) | 715 |
| BalI | TGGCCA | 1 cut(s) | 594 |
| BanI | GGYRCC | 2 cut(s) | 447, 605 |
| BanII | GRGCYC | 1 cut(s) | 730 |
| BauI | CACGAG | 1 cut(s) | 729 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| Bbv12I | GWGCWC | 1 cut(s) | 730 |
| BccI | CCATC | 3 cut(s) | 126, 280, 633 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 299, 333 |
| BcoDI | GTCTC | 2 cut(s) | 76, 280 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BfoI | RGCGCY | 2 cut(s) | 451, 650 |
| BmiI | GGNNCC | 3 cut(s) | 449, 548, 607 |
| BmsI | GCATC | 1 cut(s) | 226 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| BsaHI | GRCGYC | 1 cut(s) | 448 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 1 cut(s) | 393 |
| BsaWI | WCCGGW | 1 cut(s) | 412 |
| Bse1I | ACTGG | 2 cut(s) | 28, 744 |
| Bse3DI | GCAATG | 1 cut(s) | 589 |
| BseAI | TCCGGA | 1 cut(s) | 412 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseDI | CCNNGG | 1 cut(s) | 393 |
| BseGI | GGATG | 2 cut(s) | 22, 363 |
| BseMI | GCAATG | 1 cut(s) | 589 |
| BseMII | CTCAG | 1 cut(s) | 693 |
| BseNI | ACTGG | 2 cut(s) | 28, 744 |
| BseSI | GKGCMC | 1 cut(s) | 715 |
| BshFI | GGCC | 1 cut(s) | 594 |
| BshNI | GGYRCC | 2 cut(s) | 447, 605 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BsiHKAI | GWGCWC | 1 cut(s) | 730 |
| BsiSI | CCGG | 1 cut(s) | 413 |
| BsmAI | GTCTC | 2 cut(s) | 76, 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsnI | GGCC | 1 cut(s) | 594 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 2 cut(s) | 715, 730 |
| Bsp13I | TCCGGA | 1 cut(s) | 412 |
| Bsp143I | GATC | 3 cut(s) | 228, 389, 493 |
| BspACI | CCGC | 1 cut(s) | 145 |
| BspANI | GGCC | 1 cut(s) | 594 |
| BspCNI | CTCAG | 1 cut(s) | 694 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspEI | TCCGGA | 1 cut(s) | 412 |
| BspHI | TCATGA | 1 cut(s) | 355 |
| BspLI | GGNNCC | 3 cut(s) | 449, 548, 607 |
| BspPI | GGATC | 2 cut(s) | 384, 488 |
| BspT107I | GGYRCC | 2 cut(s) | 447, 605 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrDI | GCAATG | 1 cut(s) | 589 |
| BsrI | ACTGG | 2 cut(s) | 28, 744 |
| BssECI | CCNNGG | 1 cut(s) | 393 |
| BssMI | GATC | 3 cut(s) | 228, 389, 493 |
| BssNAI | GTATAC | 1 cut(s) | 477 |
| BssNI | GRCGYC | 1 cut(s) | 448 |
| BssSI | CACGAG | 1 cut(s) | 729 |
| Bst1107I | GTATAC | 1 cut(s) | 477 |
| Bst2BI | CACGAG | 1 cut(s) | 729 |
| BstACI | GRCGYC | 1 cut(s) | 448 |
| BstDEI | CTNAG | 5 cut(s) | 294, 438, 470, 618, 702 |
| BstDSI | CCRYGG | 1 cut(s) | 393 |
| BstF5I | GGATG | 2 cut(s) | 22, 363 |
| BstH2I | RGCGCY | 2 cut(s) | 451, 650 |
| BstHHI | GCGC | 2 cut(s) | 450, 649 |
| BstKTI | GATC | 3 cut(s) | 231, 392, 496 |
| BstMAI | GTCTC | 2 cut(s) | 76, 280 |
| BstMBI | GATC | 3 cut(s) | 228, 389, 493 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 454, 644 |
| BstNSI | RCATGY | 1 cut(s) | 410 |
| BstSLI | GKGCMC | 1 cut(s) | 715 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BstX2I | RGATCY | 1 cut(s) | 389 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 602 |
| BstYI | RGATCY | 1 cut(s) | 389 |
| BstZ17I | GTATAC | 1 cut(s) | 477 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| BsuRI | GGCC | 1 cut(s) | 594 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtgI | CCRYGG | 1 cut(s) | 393 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 2 cut(s) | 22, 363 |
| CciI | TCATGA | 1 cut(s) | 355 |
| CfoI | GCGC | 2 cut(s) | 450, 649 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| CseI | GACGC | 1 cut(s) | 644 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 3 cut(s) | 356, 407, 596 |
| CviJI | RGCY | 8 cut(s) | 64, 141, 174, 335, 594, 624, 728, 749 |
| CviKI_1 | RGCY | 8 cut(s) | 64, 141, 174, 335, 594, 624, 728, 749 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 5 cut(s) | 294, 438, 470, 618, 702 |
| DinI | GGCGCC | 1 cut(s) | 449 |
| DpnI | GATC | 3 cut(s) | 230, 391, 495 |
| DpnII | GATC | 3 cut(s) | 228, 389, 493 |
| EaeI | YGGCCR | 1 cut(s) | 592 |
| Ecl136II | GAGCTC | 1 cut(s) | 728 |
| Eco24I | GRGCYC | 1 cut(s) | 730 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 1 cut(s) | 728 |
| EcoICRI | GAGCTC | 1 cut(s) | 728 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoT38I | GRGCYC | 1 cut(s) | 730 |
| EgeI | GGCGCC | 1 cut(s) | 449 |
| EheI | GGCGCC | 1 cut(s) | 449 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 3 cut(s) | 359, 410, 599 |
| FatI | CATG | 3 cut(s) | 355, 406, 595 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FblI | GTMKAC | 1 cut(s) | 476 |
| FokI | GGATG | 2 cut(s) | 29, 350 |
| FriOI | GRGCYC | 1 cut(s) | 730 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GlaI | GCGC | 2 cut(s) | 449, 648 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 2 cut(s) | 451, 650 |
| HaeIII | GGCC | 1 cut(s) | 594 |
| HapII | CCGG | 1 cut(s) | 413 |
| HgaI | GACGC | 1 cut(s) | 644 |
| HhaI | GCGC | 2 cut(s) | 450, 649 |
| Hin1I | GRCGYC | 1 cut(s) | 448 |
| Hin1II | CATG | 3 cut(s) | 359, 410, 599 |
| Hin6I | GCGC | 2 cut(s) | 448, 647 |
| HinP1I | GCGC | 2 cut(s) | 448, 647 |
| HinfI | GANTC | 7 cut(s) | 4, 20, 104, 256, 306, 324, 416 |
| HpaII | CCGG | 1 cut(s) | 413 |
| Hpy166II | GTNNAC | 2 cut(s) | 477, 560 |
| Hpy188I | TCNGA | 3 cut(s) | 184, 493, 703 |
| Hpy188III | TCNNGA | 5 cut(s) | 116, 356, 413, 483, 731 |
| Hpy8I | GTNNAC | 2 cut(s) | 477, 560 |
| HpyAV | CCTTC | 3 cut(s) | 54, 277, 512 |
| HpyCH4IV | ACGT | 2 cut(s) | 96, 562 |
| HpyCH4V | TGCA | 2 cut(s) | 281, 320 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 454, 644 |
| HpyF3I | CTNAG | 5 cut(s) | 294, 438, 470, 618, 702 |
| HpySE526I | ACGT | 2 cut(s) | 96, 562 |
| Hsp92I | GRCGYC | 1 cut(s) | 448 |
| Hsp92II | CATG | 3 cut(s) | 359, 410, 599 |
| HspAI | GCGC | 2 cut(s) | 448, 647 |
| KasI | GGCGCC | 1 cut(s) | 447 |
| Kpn2I | TCCGGA | 1 cut(s) | 412 |
| Kzo9I | GATC | 3 cut(s) | 228, 389, 493 |
| LmnI | GCTCC | 2 cut(s) | 30, 332 |
| LpnPI | CCDG | 7 cut(s) | 41, 70, 129, 426, 468, 576, 725 |
| LweI | GCATC | 1 cut(s) | 226 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeII | ACGT | 2 cut(s) | 96, 562 |
| MaeIII | GTNAC | 2 cut(s) | 101, 742 |
| MalI | GATC | 3 cut(s) | 230, 391, 495 |
| MboI | GATC | 3 cut(s) | 228, 389, 493 |
| MboII | GAAGA | 6 cut(s) | 59, 62, 92, 265, 385, 746 |
| MflI | RGATCY | 1 cut(s) | 389 |
| MhlI | GDGCHC | 2 cut(s) | 715, 730 |
| MlsI | TGGCCA | 1 cut(s) | 594 |
| MluCI | AATT | 4 cut(s) | 212, 382, 421, 502 |
| MluNI | TGGCCA | 1 cut(s) | 594 |
| Mly113I | GGCGCC | 1 cut(s) | 448 |
| MlyI | GAGTC | 3 cut(s) | 98, 250, 318 |
| MnlI | CCTC | 7 cut(s) | 152, 437, 445, 568, 572, 598, 660 |
| Mox20I | TGGCCA | 1 cut(s) | 594 |
| MroI | TCCGGA | 1 cut(s) | 412 |
| MroXI | GAANNNNTTC | 2 cut(s) | 189, 408 |
| MscI | TGGCCA | 1 cut(s) | 594 |
| MseI | TTAA | 2 cut(s) | 198, 206 |
| MslI | CAYNNNNRTG | 4 cut(s) | 15, 368, 600, 630 |
| Msp20I | TGGCCA | 1 cut(s) | 594 |
| MspI | CCGG | 1 cut(s) | 413 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 454, 644 |
| NarI | GGCGCC | 1 cut(s) | 448 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 228, 389, 493 |
| NlaIII | CATG | 3 cut(s) | 359, 410, 599 |
| NlaIV | GGNNCC | 3 cut(s) | 449, 548, 607 |
| NmuCI | GTSAC | 2 cut(s) | 101, 742 |
| NspI | RCATGY | 1 cut(s) | 410 |
| PagI | TCATGA | 1 cut(s) | 355 |
| PciI | ACATGT | 1 cut(s) | 406 |
| PdmI | GAANNNNTTC | 2 cut(s) | 189, 408 |
| PfeI | GAWTC | 3 cut(s) | 20, 306, 416 |
| PleI | GAGTC | 3 cut(s) | 98, 250, 318 |
| PluTI | GGCGCC | 1 cut(s) | 451 |
| PpsI | GAGTC | 3 cut(s) | 98, 250, 318 |
| PscI | ACATGT | 1 cut(s) | 406 |
| Psp124BI | GAGCTC | 1 cut(s) | 730 |
| PspN4I | GGNNCC | 3 cut(s) | 449, 548, 607 |
| PsuI | RGATCY | 1 cut(s) | 389 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 4 cut(s) | 15, 368, 600, 630 |
| SacI | GAGCTC | 1 cut(s) | 730 |
| SaqAI | TTAA | 2 cut(s) | 198, 206 |
| Sau3AI | GATC | 3 cut(s) | 228, 389, 493 |
| SchI | GAGTC | 3 cut(s) | 98, 250, 318 |
| SduI | GDGCHC | 2 cut(s) | 715, 730 |
| SfaNI | GCATC | 1 cut(s) | 226 |
| SfoI | GGCGCC | 1 cut(s) | 449 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 15, 368, 600, 630 |
| Sse9I | AATT | 4 cut(s) | 212, 382, 421, 502 |
| SsiI | CCGC | 1 cut(s) | 145 |
| SspDI | GGCGCC | 1 cut(s) | 447 |
| SspMI | CTAG | 1 cut(s) | 122 |
| SstI | GAGCTC | 1 cut(s) | 730 |
| TaiI | ACGT | 2 cut(s) | 99, 565 |
| TaqI | TCGA | 4 cut(s) | 78, 304, 309, 666 |
| TasI | AATT | 4 cut(s) | 212, 382, 421, 502 |
| TfiI | GAWTC | 3 cut(s) | 20, 306, 416 |
| Tru1I | TTAA | 2 cut(s) | 198, 206 |
| Tru9I | TTAA | 2 cut(s) | 198, 206 |
| TseFI | GTSAC | 2 cut(s) | 101, 742 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 742 |
| TspDTI | ATGAA | 3 cut(s) | 56, 60, 353 |
| TspGWI | ACGGA | 3 cut(s) | 89, 382, 559 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XceI | RCATGY | 1 cut(s) | 410 |
| XmiI | GTMKAC | 1 cut(s) | 476 |
| XmnI | GAANNNNTTC | 2 cut(s) | 189, 408 |
| XspI | CTAG | 1 cut(s) | 122 |