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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 12 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 348 |
| AatII | GACGTC | 1 cut(s) | 346 |
| AccB1I | GGYRCC | 1 cut(s) | 188 |
| AccII | CGCG | 1 cut(s) | 288 |
| AccIII | TCCGGA | 1 cut(s) | 268 |
| AciI | CCGC | 1 cut(s) | 441 |
| AcoI | YGGCCR | 1 cut(s) | 55 |
| AcyI | GRCGYC | 2 cut(s) | 189, 343 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 371 |
| AflIII | ACRYGT | 1 cut(s) | 415 |
| AgsI | TTSAA | 1 cut(s) | 129 |
| AluBI | AGCT | 2 cut(s) | 181, 203 |
| AluI | AGCT | 2 cut(s) | 181, 203 |
| Alw21I | GWGCWC | 1 cut(s) | 183 |
| Alw26I | GTCTC | 1 cut(s) | 115 |
| Aor13HI | TCCGGA | 1 cut(s) | 268 |
| AoxI | GGCC | 1 cut(s) | 55 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 24 |
| AspLEI | GCGC | 2 cut(s) | 191, 290 |
| AspS9I | GGNCC | 1 cut(s) | 350 |
| AvaII | GGWCC | 1 cut(s) | 350 |
| BalI | TGGCCA | 1 cut(s) | 57 |
| BanI | GGYRCC | 1 cut(s) | 188 |
| BanII | GRGCYC | 1 cut(s) | 183 |
| BbsI | GAAGAC | 1 cut(s) | 95 |
| Bbv12I | GWGCWC | 1 cut(s) | 183 |
| BccI | CCATC | 1 cut(s) | 37 |
| BcoDI | GTCTC | 1 cut(s) | 115 |
| BfaI | CTAG | 1 cut(s) | 243 |
| BfmI | CTRYAG | 1 cut(s) | 280 |
| BfoI | RGCGCY | 1 cut(s) | 192 |
| Bme18I | GGWCC | 1 cut(s) | 350 |
| BmgT120I | GGNCC | 1 cut(s) | 350 |
| BmiI | GGNNCC | 3 cut(s) | 190, 401, 445 |
| BpiI | GAAGAC | 1 cut(s) | 95 |
| BsaBI | GATNNNNATC | 1 cut(s) | 80 |
| BsaHI | GRCGYC | 2 cut(s) | 189, 343 |
| BsaJI | CCNNGG | 3 cut(s) | 249, 403, 454 |
| BsaWI | WCCGGW | 1 cut(s) | 268 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 371 |
| Bse8I | GATNNNNATC | 1 cut(s) | 80 |
| BseAI | TCCGGA | 1 cut(s) | 268 |
| BseDI | CCNNGG | 3 cut(s) | 249, 403, 454 |
| BseJI | GATNNNNATC | 1 cut(s) | 80 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 371 |
| Bsh1236I | CGCG | 1 cut(s) | 288 |
| BshFI | GGCC | 1 cut(s) | 57 |
| BshNI | GGYRCC | 1 cut(s) | 188 |
| BsiHKAI | GWGCWC | 1 cut(s) | 183 |
| BsiSI | CCGG | 1 cut(s) | 269 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 371 |
| BsmAI | GTCTC | 1 cut(s) | 115 |
| BsmBI | CGTCTC | 1 cut(s) | 115 |
| BsmI | GAATGC | 1 cut(s) | 157 |
| BsnI | GGCC | 1 cut(s) | 57 |
| Bsp1286I | GDGCHC | 1 cut(s) | 183 |
| Bsp13I | TCCGGA | 1 cut(s) | 268 |
| Bsp143I | GATC | 1 cut(s) | 81 |
| Bsp19I | CCATGG | 2 cut(s) | 249, 454 |
| BspACI | CCGC | 1 cut(s) | 441 |
| BspANI | GGCC | 1 cut(s) | 57 |
| BspEI | TCCGGA | 1 cut(s) | 268 |
| BspFNI | CGCG | 1 cut(s) | 288 |
| BspHI | TCATGA | 1 cut(s) | 175 |
| BspLI | GGNNCC | 3 cut(s) | 190, 401, 445 |
| BspT107I | GGYRCC | 1 cut(s) | 188 |
| BssECI | CCNNGG | 3 cut(s) | 249, 403, 454 |
| BssMI | GATC | 1 cut(s) | 81 |
| BssNI | GRCGYC | 2 cut(s) | 189, 343 |
| BssT1I | CCWWGG | 2 cut(s) | 249, 454 |
| Bst4CI | ACNGT | 1 cut(s) | 404 |
| Bst6I | CTCTTC | 1 cut(s) | 416 |
| BstACI | GRCGYC | 2 cut(s) | 189, 343 |
| BstDEI | CTNAG | 2 cut(s) | 258, 321 |
| BstDSI | CCRYGG | 3 cut(s) | 249, 403, 454 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 369 |
| BstFNI | CGCG | 1 cut(s) | 288 |
| BstH2I | RGCGCY | 1 cut(s) | 192 |
| BstHHI | GCGC | 2 cut(s) | 191, 290 |
| BstKTI | GATC | 1 cut(s) | 84 |
| BstMAI | GTCTC | 1 cut(s) | 115 |
| BstMBI | GATC | 1 cut(s) | 81 |
| BstSFI | CTRYAG | 1 cut(s) | 280 |
| BstUI | CGCG | 1 cut(s) | 288 |
| BstV2I | GAAGAC | 1 cut(s) | 95 |
| BsuRI | GGCC | 1 cut(s) | 57 |
| BtgI | CCRYGG | 3 cut(s) | 249, 403, 454 |
| CciI | TCATGA | 1 cut(s) | 175 |
| CfoI | GCGC | 2 cut(s) | 191, 290 |
| Cfr13I | GGNCC | 1 cut(s) | 350 |
| CseI | GACGC | 1 cut(s) | 312 |
| CviAII | CATG | 5 cut(s) | 176, 250, 347, 455, 494 |
| CviJI | RGCY | 7 cut(s) | 23, 57, 62, 181, 203, 446, 508 |
| CviKI_1 | RGCY | 7 cut(s) | 23, 57, 62, 181, 203, 446, 508 |
| DdeI | CTNAG | 2 cut(s) | 258, 321 |
| DinI | GGCGCC | 1 cut(s) | 190 |
| DpnI | GATC | 1 cut(s) | 83 |
| DpnII | GATC | 1 cut(s) | 81 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 348 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 348 |
| EaeI | YGGCCR | 1 cut(s) | 55 |
| Eam1104I | CTCTTC | 1 cut(s) | 416 |
| EarI | CTCTTC | 1 cut(s) | 416 |
| EciI | GGCGGA | 1 cut(s) | 456 |
| Ecl136II | GAGCTC | 1 cut(s) | 181 |
| Eco130I | CCWWGG | 2 cut(s) | 249, 454 |
| Eco24I | GRGCYC | 1 cut(s) | 183 |
| Eco47I | GGWCC | 1 cut(s) | 350 |
| Eco53kI | GAGCTC | 1 cut(s) | 181 |
| EcoICRI | GAGCTC | 1 cut(s) | 181 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 369 |
| EcoT14I | CCWWGG | 2 cut(s) | 249, 454 |
| EcoT38I | GRGCYC | 1 cut(s) | 183 |
| EgeI | GGCGCC | 1 cut(s) | 190 |
| EheI | GGCGCC | 1 cut(s) | 190 |
| ErhI | CCWWGG | 2 cut(s) | 249, 454 |
| Esp3I | CGTCTC | 1 cut(s) | 115 |
| FaeI | CATG | 5 cut(s) | 179, 253, 350, 458, 497 |
| FatI | CATG | 5 cut(s) | 175, 249, 346, 454, 493 |
| FauNDI | CATATG | 1 cut(s) | 355 |
| FriOI | GRGCYC | 1 cut(s) | 183 |
| FspBI | CTAG | 1 cut(s) | 243 |
| GlaI | GCGC | 2 cut(s) | 190, 289 |
| HaeII | RGCGCY | 1 cut(s) | 192 |
| HaeIII | GGCC | 1 cut(s) | 57 |
| HapII | CCGG | 1 cut(s) | 269 |
| HgaI | GACGC | 1 cut(s) | 312 |
| HhaI | GCGC | 2 cut(s) | 191, 290 |
| Hin1I | GRCGYC | 2 cut(s) | 189, 343 |
| Hin1II | CATG | 5 cut(s) | 179, 253, 350, 458, 497 |
| Hin6I | GCGC | 2 cut(s) | 189, 288 |
| HinP1I | GCGC | 2 cut(s) | 189, 288 |
| HincII | GTYRAC | 1 cut(s) | 413 |
| HindII | GTYRAC | 1 cut(s) | 413 |
| HinfI | GANTC | 2 cut(s) | 91, 272 |
| HpaII | CCGG | 1 cut(s) | 269 |
| Hpy166II | GTNNAC | 1 cut(s) | 413 |
| Hpy188I | TCNGA | 4 cut(s) | 19, 42, 141, 451 |
| Hpy188III | TCNNGA | 4 cut(s) | 85, 176, 269, 339 |
| Hpy8I | GTNNAC | 1 cut(s) | 413 |
| HpyAV | CCTTC | 3 cut(s) | 35, 112, 365 |
| HpyCH4III | ACNGT | 1 cut(s) | 404 |
| HpyCH4IV | ACGT | 4 cut(s) | 160, 198, 343, 415 |
| HpyCH4V | TGCA | 1 cut(s) | 155 |
| HpyF3I | CTNAG | 2 cut(s) | 258, 321 |
| HpySE526I | ACGT | 4 cut(s) | 160, 198, 343, 415 |
| Hsp92I | GRCGYC | 2 cut(s) | 189, 343 |
| Hsp92II | CATG | 5 cut(s) | 179, 253, 350, 458, 497 |
| HspAI | GCGC | 2 cut(s) | 189, 288 |
| KasI | GGCGCC | 1 cut(s) | 188 |
| Kpn2I | TCCGGA | 1 cut(s) | 268 |
| Kzo9I | GATC | 1 cut(s) | 81 |
| LmnI | GCTCC | 2 cut(s) | 310, 443 |
| LpnPI | CCDG | 5 cut(s) | 131, 141, 237, 282, 324 |
| MaeI | CTAG | 1 cut(s) | 243 |
| MaeII | ACGT | 4 cut(s) | 160, 198, 343, 415 |
| MaeIII | GTNAC | 1 cut(s) | 461 |
| MalI | GATC | 1 cut(s) | 83 |
| MboI | GATC | 1 cut(s) | 81 |
| MboII | GAAGA | 3 cut(s) | 100, 241, 433 |
| MhlI | GDGCHC | 1 cut(s) | 183 |
| MlsI | TGGCCA | 1 cut(s) | 57 |
| MluCI | AATT | 2 cut(s) | 133, 334 |
| MluNI | TGGCCA | 1 cut(s) | 57 |
| Mly113I | GGCGCC | 1 cut(s) | 189 |
| MlyI | GAGTC | 2 cut(s) | 85, 281 |
| MnlI | CCTC | 5 cut(s) | 293, 381, 401, 431, 457 |
| Mox20I | TGGCCA | 1 cut(s) | 57 |
| MroI | TCCGGA | 1 cut(s) | 268 |
| MroXI | GAANNNNTTC | 1 cut(s) | 24 |
| MscI | TGGCCA | 1 cut(s) | 57 |
| Msp20I | TGGCCA | 1 cut(s) | 57 |
| MspI | CCGG | 1 cut(s) | 269 |
| Mva1269I | GAATGC | 1 cut(s) | 157 |
| MvnI | CGCG | 1 cut(s) | 288 |
| NarI | GGCGCC | 1 cut(s) | 189 |
| NcoI | CCATGG | 2 cut(s) | 249, 454 |
| NdeI | CATATG | 1 cut(s) | 355 |
| NdeII | GATC | 1 cut(s) | 81 |
| NlaIII | CATG | 5 cut(s) | 179, 253, 350, 458, 497 |
| NlaIV | GGNNCC | 3 cut(s) | 190, 401, 445 |
| PagI | TCATGA | 1 cut(s) | 175 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 310 |
| PctI | GAATGC | 1 cut(s) | 157 |
| PdmI | GAANNNNTTC | 1 cut(s) | 24 |
| PleI | GAGTC | 2 cut(s) | 85, 280 |
| PluTI | GGCGCC | 1 cut(s) | 192 |
| PpsI | GAGTC | 2 cut(s) | 85, 280 |
| PsiI | TTATAA | 1 cut(s) | 12 |
| Psp124BI | GAGCTC | 1 cut(s) | 183 |
| PspN4I | GGNNCC | 3 cut(s) | 190, 401, 445 |
| PspPI | GGNCC | 1 cut(s) | 350 |
| SacI | GAGCTC | 1 cut(s) | 183 |
| Sau3AI | GATC | 1 cut(s) | 81 |
| Sau96I | GGNCC | 1 cut(s) | 350 |
| SchI | GAGTC | 2 cut(s) | 85, 281 |
| SduI | GDGCHC | 1 cut(s) | 183 |
| SetI | ASST | 9 cut(s) | 104, 163, 173, 183, 201, 205, 346, 412, 418 |
| SfcI | CTRYAG | 1 cut(s) | 280 |
| SfoI | GGCGCC | 1 cut(s) | 190 |
| SinI | GGWCC | 1 cut(s) | 350 |
| Sse9I | AATT | 2 cut(s) | 133, 334 |
| SsiI | CCGC | 1 cut(s) | 441 |
| SspDI | GGCGCC | 1 cut(s) | 188 |
| SspI | AATATT | 1 cut(s) | 220 |
| SspMI | CTAG | 1 cut(s) | 243 |
| SstI | GAGCTC | 1 cut(s) | 183 |
| StyI | CCWWGG | 2 cut(s) | 249, 454 |
| TaaI | ACNGT | 1 cut(s) | 404 |
| TaiI | ACGT | 4 cut(s) | 163, 201, 346, 418 |
| TaqI | TCGA | 1 cut(s) | 84 |
| TasI | AATT | 2 cut(s) | 133, 334 |
| TspDTI | ATGAA | 1 cut(s) | 164 |
| TspGWI | ACGGA | 1 cut(s) | 412 |
| VpaK11BI | GGWCC | 1 cut(s) | 350 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 369 |
| XmnI | GAANNNNTTC | 1 cut(s) | 24 |
| XspI | CTAG | 1 cut(s) | 243 |
| ZraI | GACGTC | 1 cut(s) | 344 |