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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 651 |
| AccII | CGCG | 1 cut(s) | 642 |
| AciI | CCGC | 4 cut(s) | 79, 361, 435, 642 |
| AclWI | GGATC | 1 cut(s) | 525 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AfaI | GTAC | 2 cut(s) | 248, 720 |
| AgsI | TTSAA | 3 cut(s) | 376, 674, 704 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AleI | CACNNNNGTG | 1 cut(s) | 452 |
| AluBI | AGCT | 4 cut(s) | 48, 155, 161, 697 |
| AluI | AGCT | 4 cut(s) | 48, 155, 161, 697 |
| Alw21I | GWGCWC | 1 cut(s) | 699 |
| Alw26I | GTCTC | 1 cut(s) | 642 |
| AlwI | GGATC | 1 cut(s) | 525 |
| AoxI | GGCC | 1 cut(s) | 285 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 405, 572, 678 |
| AspS9I | GGNCC | 1 cut(s) | 285 |
| AsuC2I | CCSGG | 1 cut(s) | 515 |
| AsuNHI | GCTAGC | 1 cut(s) | 551 |
| BanII | GRGCYC | 1 cut(s) | 699 |
| BbsI | GAAGAC | 3 cut(s) | 273, 476, 575 |
| Bbv12I | GWGCWC | 1 cut(s) | 699 |
| BccI | CCATC | 8 cut(s) | 92, 215, 342, 496, 497, 572, 650, 752 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcnI | CCSGG | 1 cut(s) | 515 |
| BcoDI | GTCTC | 1 cut(s) | 642 |
| BfaI | CTAG | 4 cut(s) | 45, 126, 338, 552 |
| BfmI | CTRYAG | 1 cut(s) | 144 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| Bme1390I | CCNGG | 2 cut(s) | 131, 515 |
| BmgT120I | GGNCC | 1 cut(s) | 285 |
| BmiI | GGNNCC | 1 cut(s) | 168 |
| BmrFI | CCNGG | 2 cut(s) | 131, 515 |
| BmsI | GCATC | 2 cut(s) | 94, 538 |
| BmtI | GCTAGC | 1 cut(s) | 555 |
| BpiI | GAAGAC | 3 cut(s) | 273, 476, 575 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 140, 141 |
| BpuMI | CCSGG | 1 cut(s) | 515 |
| BsaI | GGTCTC | 1 cut(s) | 642 |
| BsaJI | CCNNGG | 1 cut(s) | 513 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseDI | CCNNGG | 1 cut(s) | 513 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 520 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| Bsh1236I | CGCG | 1 cut(s) | 642 |
| BshFI | GGCC | 1 cut(s) | 287 |
| BsiHKAI | GWGCWC | 1 cut(s) | 699 |
| BsiSI | CCGG | 1 cut(s) | 515 |
| BsmAI | GTCTC | 1 cut(s) | 642 |
| BsnI | GGCC | 1 cut(s) | 287 |
| Bso31I | GGTCTC | 1 cut(s) | 642 |
| Bsp1286I | GDGCHC | 1 cut(s) | 699 |
| Bsp1407I | TGTACA | 1 cut(s) | 718 |
| Bsp143I | GATC | 2 cut(s) | 444, 517 |
| BspACI | CCGC | 4 cut(s) | 79, 361, 435, 642 |
| BspANI | GGCC | 1 cut(s) | 287 |
| BspFNI | CGCG | 1 cut(s) | 642 |
| BspLI | GGNNCC | 1 cut(s) | 168 |
| BspOI | GCTAGC | 1 cut(s) | 555 |
| BspPI | GGATC | 1 cut(s) | 525 |
| BspTNI | GGTCTC | 1 cut(s) | 642 |
| BsrGI | TGTACA | 1 cut(s) | 718 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssECI | CCNNGG | 1 cut(s) | 513 |
| BssMI | GATC | 2 cut(s) | 444, 517 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstAUI | TGTACA | 1 cut(s) | 718 |
| BstC8I | GCNNGC | 3 cut(s) | 83, 153, 553 |
| BstDEI | CTNAG | 2 cut(s) | 184, 684 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 520 |
| BstFNI | CGCG | 1 cut(s) | 642 |
| BstKTI | GATC | 2 cut(s) | 447, 520 |
| BstMAI | GTCTC | 1 cut(s) | 642 |
| BstMBI | GATC | 2 cut(s) | 444, 517 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 188 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 2 cut(s) | 129, 513 |
| BstSFI | CTRYAG | 1 cut(s) | 144 |
| BstUI | CGCG | 1 cut(s) | 642 |
| BstV2I | GAAGAC | 3 cut(s) | 273, 476, 575 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 287 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 520 |
| Cac8I | GCNNGC | 3 cut(s) | 83, 153, 553 |
| Cfr13I | GGNCC | 1 cut(s) | 285 |
| Csp6I | GTAC | 2 cut(s) | 247, 719 |
| CviAII | CATG | 3 cut(s) | 619, 722, 782 |
| CviQI | GTAC | 2 cut(s) | 247, 719 |
| DdeI | CTNAG | 2 cut(s) | 184, 684 |
| DpnI | GATC | 2 cut(s) | 446, 519 |
| DpnII | GATC | 2 cut(s) | 444, 517 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 697 |
| Eco24I | GRGCYC | 1 cut(s) | 699 |
| Eco31I | GGTCTC | 1 cut(s) | 642 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 1 cut(s) | 697 |
| EcoICRI | GAGCTC | 1 cut(s) | 697 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT38I | GRGCYC | 1 cut(s) | 699 |
| FaeI | CATG | 3 cut(s) | 622, 725, 785 |
| FatI | CATG | 3 cut(s) | 618, 721, 781 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FblI | GTMKAC | 1 cut(s) | 651 |
| FokI | GGATG | 3 cut(s) | 197, 245, 507 |
| FriOI | GRGCYC | 1 cut(s) | 699 |
| FspBI | CTAG | 4 cut(s) | 45, 126, 338, 552 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 1 cut(s) | 287 |
| HapII | CCGG | 1 cut(s) | 515 |
| Hin1II | CATG | 3 cut(s) | 622, 725, 785 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 5 cut(s) | 102, 115, 236, 320, 472 |
| HpaII | CCGG | 1 cut(s) | 515 |
| Hpy166II | GTNNAC | 3 cut(s) | 561, 652, 719 |
| Hpy188III | TCNNGA | 5 cut(s) | 71, 119, 332, 386, 665 |
| Hpy8I | GTNNAC | 3 cut(s) | 561, 652, 719 |
| HpyAV | CCTTC | 2 cut(s) | 270, 493 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 312 |
| HpyCH4V | TGCA | 2 cut(s) | 588, 781 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 188 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 684 |
| HpySE526I | ACGT | 1 cut(s) | 312 |
| Hsp92II | CATG | 3 cut(s) | 622, 725, 785 |
| Kzo9I | GATC | 2 cut(s) | 444, 517 |
| LmnI | GCTCC | 1 cut(s) | 34 |
| LweI | GCATC | 2 cut(s) | 94, 538 |
| MaeI | CTAG | 4 cut(s) | 45, 126, 338, 552 |
| MaeII | ACGT | 1 cut(s) | 312 |
| MaeIII | GTNAC | 2 cut(s) | 5, 317 |
| MalI | GATC | 2 cut(s) | 446, 519 |
| MboI | GATC | 2 cut(s) | 444, 517 |
| MboII | GAAGA | 5 cut(s) | 275, 278, 308, 481, 580 |
| MfeI | CAATTG | 1 cut(s) | 534 |
| MhlI | GDGCHC | 1 cut(s) | 699 |
| MluCI | AATT | 4 cut(s) | 17, 428, 534, 750 |
| MlyI | GAGTC | 2 cut(s) | 314, 466 |
| MmeI | TCCRAC | 1 cut(s) | 583 |
| MnlI | CCTC | 2 cut(s) | 181, 368 |
| MroXI | GAANNNNTTC | 3 cut(s) | 405, 572, 678 |
| MseI | TTAA | 2 cut(s) | 414, 422 |
| MslI | CAYNNNNRTG | 5 cut(s) | 231, 452, 617, 631, 714 |
| MspI | CCGG | 1 cut(s) | 515 |
| MspR9I | CCNGG | 2 cut(s) | 131, 515 |
| MunI | CAATTG | 1 cut(s) | 534 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MvnI | CGCG | 1 cut(s) | 642 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 188 |
| NciI | CCSGG | 1 cut(s) | 515 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 2 cut(s) | 444, 517 |
| NheI | GCTAGC | 1 cut(s) | 551 |
| NlaIII | CATG | 3 cut(s) | 622, 725, 785 |
| NlaIV | GGNNCC | 1 cut(s) | 168 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| OliI | CACNNNNGTG | 1 cut(s) | 452 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 552, 804 |
| PdmI | GAANNNNTTC | 3 cut(s) | 405, 572, 678 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 236 |
| PleI | GAGTC | 2 cut(s) | 314, 466 |
| PpsI | GAGTC | 2 cut(s) | 314, 466 |
| Psp124BI | GAGCTC | 1 cut(s) | 699 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 1 cut(s) | 168 |
| PspPI | GGNCC | 1 cut(s) | 285 |
| RsaI | GTAC | 2 cut(s) | 248, 720 |
| RsaNI | GTAC | 2 cut(s) | 247, 719 |
| RseI | CAYNNNNRTG | 5 cut(s) | 231, 452, 617, 631, 714 |
| SacI | GAGCTC | 1 cut(s) | 699 |
| SaqAI | TTAA | 2 cut(s) | 414, 422 |
| Sau3AI | GATC | 2 cut(s) | 444, 517 |
| Sau96I | GGNCC | 1 cut(s) | 285 |
| SchI | GAGTC | 2 cut(s) | 314, 466 |
| ScrFI | CCNGG | 2 cut(s) | 131, 515 |
| SduI | GDGCHC | 1 cut(s) | 699 |
| SfaNI | GCATC | 2 cut(s) | 94, 538 |
| SfcI | CTRYAG | 1 cut(s) | 144 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 231, 452, 617, 631, 714 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 4 cut(s) | 17, 428, 534, 750 |
| SsiI | CCGC | 4 cut(s) | 79, 361, 435, 642 |
| SspMI | CTAG | 4 cut(s) | 45, 126, 338, 552 |
| SstI | GAGCTC | 1 cut(s) | 699 |
| StyD4I | CCNGG | 2 cut(s) | 129, 513 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 315 |
| TaqI | TCGA | 6 cut(s) | 96, 294, 566, 576, 798, 807 |
| TasI | AATT | 4 cut(s) | 17, 428, 534, 750 |
| TatI | WGTACW | 1 cut(s) | 718 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 236 |
| Tru1I | TTAA | 2 cut(s) | 414, 422 |
| Tru9I | TTAA | 2 cut(s) | 414, 422 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 4 cut(s) | 272, 276, 635, 808 |
| TspGWI | ACGGA | 1 cut(s) | 305 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XmiI | GTMKAC | 1 cut(s) | 651 |
| XmnI | GAANNNNTTC | 3 cut(s) | 405, 572, 678 |
| XspI | CTAG | 4 cut(s) | 45, 126, 338, 552 |