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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 525 |
| AccB1I | GGYRCC | 2 cut(s) | 356, 679 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 881 |
| AciI | CCGC | 1 cut(s) | 615 |
| AclWI | GGATC | 2 cut(s) | 736, 873 |
| AcoI | YGGCCR | 1 cut(s) | 223 |
| AcyI | GRCGYC | 2 cut(s) | 357, 680 |
| AfaI | GTAC | 1 cut(s) | 757 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 467, 881 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 1 cut(s) | 595 |
| AgsI | TTSAA | 2 cut(s) | 163, 297 |
| AluBI | AGCT | 2 cut(s) | 191, 349 |
| AluI | AGCT | 2 cut(s) | 191, 349 |
| Alw21I | GWGCWC | 2 cut(s) | 351, 577 |
| Alw26I | GTCTC | 3 cut(s) | 32, 210, 283 |
| Alw44I | GTGCAC | 1 cut(s) | 573 |
| AlwI | GGATC | 2 cut(s) | 736, 873 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 881 |
| AoxI | GGCC | 1 cut(s) | 223 |
| ApaLI | GTGCAC | 1 cut(s) | 573 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 192 |
| AspLEI | GCGC | 4 cut(s) | 50, 359, 458, 682 |
| AspS9I | GGNCC | 2 cut(s) | 67, 527 |
| AvaII | GGWCC | 2 cut(s) | 67, 527 |
| BaeGI | GKGCMC | 2 cut(s) | 577, 673 |
| BalI | TGGCCA | 1 cut(s) | 225 |
| BanI | GGYRCC | 2 cut(s) | 356, 679 |
| BanII | GRGCYC | 1 cut(s) | 351 |
| BbsI | GAAGAC | 2 cut(s) | 263, 861 |
| Bbv12I | GWGCWC | 2 cut(s) | 351, 577 |
| BccI | CCATC | 4 cut(s) | 122, 129, 205, 824 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 3 cut(s) | 32, 210, 283 |
| BfaI | CTAG | 2 cut(s) | 35, 411 |
| BfoI | RGCGCY | 3 cut(s) | 360, 459, 683 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 677 |
| Bme18I | GGWCC | 2 cut(s) | 67, 527 |
| BmgT120I | GGNCC | 2 cut(s) | 67, 527 |
| BmiI | GGNNCC | 6 cut(s) | 68, 358, 581, 619, 681, 696 |
| BpiI | GAAGAC | 2 cut(s) | 263, 861 |
| BsaBI | GATNNNNATC | 3 cut(s) | 248, 727, 834 |
| BsaHI | GRCGYC | 2 cut(s) | 357, 680 |
| BsaJI | CCNNGG | 3 cut(s) | 583, 628, 740 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 467, 881 |
| Bse1I | ACTGG | 2 cut(s) | 49, 886 |
| Bse8I | GATNNNNATC | 3 cut(s) | 248, 727, 834 |
| BseDI | CCNNGG | 3 cut(s) | 583, 628, 740 |
| BseGI | GGATG | 1 cut(s) | 114 |
| BseJI | GATNNNNATC | 3 cut(s) | 248, 727, 834 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 467, 881 |
| BseNI | ACTGG | 2 cut(s) | 49, 886 |
| BseRI | GAGGAG | 1 cut(s) | 137 |
| BseSI | GKGCMC | 2 cut(s) | 577, 673 |
| BsgI | GTGCAG | 1 cut(s) | 267 |
| BshFI | GGCC | 1 cut(s) | 225 |
| BshNI | GGYRCC | 2 cut(s) | 356, 679 |
| BsiHKAI | GWGCWC | 2 cut(s) | 351, 577 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 467, 881 |
| BsmAI | GTCTC | 3 cut(s) | 32, 210, 283 |
| BsmBI | CGTCTC | 1 cut(s) | 283 |
| BsnI | GGCC | 1 cut(s) | 225 |
| Bsp1286I | GDGCHC | 3 cut(s) | 351, 577, 673 |
| Bsp1407I | TGTACA | 1 cut(s) | 755 |
| Bsp143I | GATC | 6 cut(s) | 249, 686, 728, 823, 841, 865 |
| Bsp19I | CCATGG | 1 cut(s) | 628 |
| BspACI | CCGC | 1 cut(s) | 615 |
| BspANI | GGCC | 1 cut(s) | 225 |
| BspHI | TCATGA | 1 cut(s) | 343 |
| BspLI | GGNNCC | 6 cut(s) | 68, 358, 581, 619, 681, 696 |
| BspPI | GGATC | 2 cut(s) | 736, 873 |
| BspQI | GCTCTTC | 1 cut(s) | 198 |
| BspT107I | GGYRCC | 2 cut(s) | 356, 679 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrGI | TGTACA | 1 cut(s) | 755 |
| BsrI | ACTGG | 2 cut(s) | 49, 886 |
| BssECI | CCNNGG | 3 cut(s) | 583, 628, 740 |
| BssMI | GATC | 6 cut(s) | 249, 686, 728, 823, 841, 865 |
| BssNI | GRCGYC | 2 cut(s) | 357, 680 |
| BssT1I | CCWWGG | 2 cut(s) | 628, 740 |
| Bst4CI | ACNGT | 1 cut(s) | 584 |
| Bst6I | CTCTTC | 1 cut(s) | 198 |
| BstACI | GRCGYC | 2 cut(s) | 357, 680 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstAUI | TGTACA | 1 cut(s) | 755 |
| BstC8I | GCNNGC | 1 cut(s) | 573 |
| BstDEI | CTNAG | 3 cut(s) | 426, 489, 845 |
| BstDSI | CCRYGG | 2 cut(s) | 583, 628 |
| BstF5I | GGATG | 1 cut(s) | 114 |
| BstH2I | RGCGCY | 3 cut(s) | 360, 459, 683 |
| BstHHI | GCGC | 4 cut(s) | 50, 359, 458, 682 |
| BstKTI | GATC | 6 cut(s) | 252, 689, 731, 826, 844, 868 |
| BstMAI | GTCTC | 3 cut(s) | 32, 210, 283 |
| BstMBI | GATC | 6 cut(s) | 249, 686, 728, 823, 841, 865 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 130, 677, 758 |
| BstNSI | RCATGY | 1 cut(s) | 756 |
| BstSLI | GKGCMC | 2 cut(s) | 577, 673 |
| BstV2I | GAAGAC | 2 cut(s) | 263, 861 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 225 |
| BtgI | CCRYGG | 2 cut(s) | 583, 628 |
| BtgZI | GCGATG | 1 cut(s) | 148 |
| BtsCI | GGATG | 1 cut(s) | 114 |
| BtsIMutI | CAGTG | 1 cut(s) | 284 |
| Cac8I | GCNNGC | 1 cut(s) | 573 |
| CaiI | CAGNNNCTG | 1 cut(s) | 881 |
| CciI | TCATGA | 1 cut(s) | 343 |
| CfoI | GCGC | 4 cut(s) | 50, 359, 458, 682 |
| Cfr13I | GGNCC | 2 cut(s) | 67, 527 |
| Csp6I | GTAC | 1 cut(s) | 756 |
| CviAII | CATG | 6 cut(s) | 98, 344, 361, 629, 753, 811 |
| CviQI | GTAC | 1 cut(s) | 756 |
| DdeI | CTNAG | 3 cut(s) | 426, 489, 845 |
| DinI | GGCGCC | 2 cut(s) | 358, 681 |
| DpnI | GATC | 6 cut(s) | 251, 688, 730, 825, 843, 867 |
| DpnII | GATC | 6 cut(s) | 249, 686, 728, 823, 841, 865 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 525 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 525 |
| EaeI | YGGCCR | 1 cut(s) | 223 |
| Eam1104I | CTCTTC | 1 cut(s) | 198 |
| EarI | CTCTTC | 1 cut(s) | 198 |
| EciI | GGCGGA | 1 cut(s) | 630 |
| Ecl136II | GAGCTC | 1 cut(s) | 349 |
| Eco130I | CCWWGG | 2 cut(s) | 628, 740 |
| Eco24I | GRGCYC | 1 cut(s) | 351 |
| Eco47I | GGWCC | 2 cut(s) | 67, 527 |
| Eco53kI | GAGCTC | 1 cut(s) | 349 |
| EcoICRI | GAGCTC | 1 cut(s) | 349 |
| EcoT14I | CCWWGG | 2 cut(s) | 628, 740 |
| EcoT38I | GRGCYC | 1 cut(s) | 351 |
| EgeI | GGCGCC | 2 cut(s) | 358, 681 |
| EheI | GGCGCC | 2 cut(s) | 358, 681 |
| ErhI | CCWWGG | 2 cut(s) | 628, 740 |
| Esp3I | CGTCTC | 1 cut(s) | 283 |
| FaeI | CATG | 6 cut(s) | 101, 347, 364, 632, 756, 814 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 6 cut(s) | 97, 343, 360, 628, 752, 810 |
| FauNDI | CATATG | 1 cut(s) | 532 |
| FokI | GGATG | 1 cut(s) | 101 |
| FriOI | GRGCYC | 1 cut(s) | 351 |
| FspBI | CTAG | 2 cut(s) | 35, 411 |
| GlaI | GCGC | 4 cut(s) | 49, 358, 457, 681 |
| HaeII | RGCGCY | 3 cut(s) | 360, 459, 683 |
| HaeIII | GGCC | 1 cut(s) | 225 |
| HhaI | GCGC | 4 cut(s) | 50, 359, 458, 682 |
| Hin1I | GRCGYC | 2 cut(s) | 357, 680 |
| Hin1II | CATG | 6 cut(s) | 101, 347, 364, 632, 756, 814 |
| Hin6I | GCGC | 4 cut(s) | 48, 357, 456, 680 |
| HinP1I | GCGC | 4 cut(s) | 48, 357, 456, 680 |
| HincII | GTYRAC | 1 cut(s) | 593 |
| HindII | GTYRAC | 1 cut(s) | 593 |
| HinfI | GANTC | 1 cut(s) | 259 |
| Hpy166II | GTNNAC | 2 cut(s) | 575, 593 |
| Hpy188I | TCNGA | 6 cut(s) | 71, 187, 210, 309, 439, 625 |
| Hpy188III | TCNNGA | 9 cut(s) | 107, 253, 344, 507, 516, 797, 827, 839, 869 |
| Hpy8I | GTNNAC | 2 cut(s) | 575, 593 |
| HpyAV | CCTTC | 2 cut(s) | 280, 545 |
| HpyCH4III | ACNGT | 1 cut(s) | 584 |
| HpyCH4IV | ACGT | 4 cut(s) | 328, 472, 595, 791 |
| HpyCH4V | TGCA | 4 cut(s) | 284, 323, 575, 776 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 130, 677, 758 |
| HpyF3I | CTNAG | 3 cut(s) | 426, 489, 845 |
| HpySE526I | ACGT | 4 cut(s) | 328, 472, 595, 791 |
| Hsp92I | GRCGYC | 2 cut(s) | 357, 680 |
| Hsp92II | CATG | 6 cut(s) | 101, 347, 364, 632, 756, 814 |
| HspAI | GCGC | 4 cut(s) | 48, 357, 456, 680 |
| KasI | GGCGCC | 2 cut(s) | 356, 679 |
| Kzo9I | GATC | 6 cut(s) | 249, 686, 728, 823, 841, 865 |
| LguI | GCTCTTC | 1 cut(s) | 198 |
| LmnI | GCTCC | 3 cut(s) | 478, 617, 694 |
| MaeI | CTAG | 2 cut(s) | 35, 411 |
| MaeII | ACGT | 4 cut(s) | 328, 472, 595, 791 |
| MaeIII | GTNAC | 2 cut(s) | 5, 635 |
| MalI | GATC | 6 cut(s) | 251, 688, 730, 825, 843, 867 |
| MboI | GATC | 6 cut(s) | 249, 686, 728, 823, 841, 865 |
| MboII | GAAGA | 5 cut(s) | 185, 268, 409, 833, 866 |
| MhlI | GDGCHC | 3 cut(s) | 351, 577, 673 |
| MlsI | TGGCCA | 1 cut(s) | 225 |
| MluCI | AATT | 3 cut(s) | 234, 301, 805 |
| MluNI | TGGCCA | 1 cut(s) | 225 |
| Mly113I | GGCGCC | 2 cut(s) | 357, 680 |
| MlyI | GAGTC | 1 cut(s) | 253 |
| MmeI | TCCRAC | 1 cut(s) | 648 |
| MnlI | CCTC | 8 cut(s) | 155, 158, 461, 541, 561, 605, 631, 693 |
| Mox20I | TGGCCA | 1 cut(s) | 225 |
| MroXI | GAANNNNTTC | 1 cut(s) | 192 |
| MscI | TGGCCA | 1 cut(s) | 225 |
| MseI | TTAA | 3 cut(s) | 90, 444, 895 |
| MslI | CAYNNNNRTG | 1 cut(s) | 708 |
| Msp20I | TGGCCA | 1 cut(s) | 225 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 130, 677, 758 |
| NarI | GGCGCC | 2 cut(s) | 357, 680 |
| NcoI | CCATGG | 1 cut(s) | 628 |
| NdeI | CATATG | 1 cut(s) | 532 |
| NdeII | GATC | 6 cut(s) | 249, 686, 728, 823, 841, 865 |
| NlaIII | CATG | 6 cut(s) | 101, 347, 364, 632, 756, 814 |
| NlaIV | GGNNCC | 6 cut(s) | 68, 358, 581, 619, 681, 696 |
| NmeAIII | GCCGAG | 1 cut(s) | 587 |
| NspI | RCATGY | 1 cut(s) | 756 |
| PagI | TCATGA | 1 cut(s) | 343 |
| PciSI | GCTCTTC | 1 cut(s) | 198 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 664 |
| PdmI | GAANNNNTTC | 1 cut(s) | 192 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 881 |
| PleI | GAGTC | 1 cut(s) | 253 |
| PluTI | GGCGCC | 2 cut(s) | 360, 683 |
| PpsI | GAGTC | 1 cut(s) | 253 |
| Psp124BI | GAGCTC | 1 cut(s) | 351 |
| PspN4I | GGNNCC | 6 cut(s) | 68, 358, 581, 619, 681, 696 |
| PspPI | GGNCC | 2 cut(s) | 67, 527 |
| PstNI | CAGNNNCTG | 1 cut(s) | 881 |
| RsaI | GTAC | 1 cut(s) | 757 |
| RsaNI | GTAC | 1 cut(s) | 756 |
| RseI | CAYNNNNRTG | 1 cut(s) | 708 |
| SacI | GAGCTC | 1 cut(s) | 351 |
| SapI | GCTCTTC | 1 cut(s) | 198 |
| SaqAI | TTAA | 3 cut(s) | 90, 444, 895 |
| Sau3AI | GATC | 6 cut(s) | 249, 686, 728, 823, 841, 865 |
| Sau96I | GGNCC | 2 cut(s) | 67, 527 |
| SchI | GAGTC | 1 cut(s) | 253 |
| SduI | GDGCHC | 3 cut(s) | 351, 577, 673 |
| SfoI | GGCGCC | 2 cut(s) | 358, 681 |
| SinI | GGWCC | 2 cut(s) | 67, 527 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 708 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| Sse9I | AATT | 3 cut(s) | 234, 301, 805 |
| SsiI | CCGC | 1 cut(s) | 615 |
| SspDI | GGCGCC | 2 cut(s) | 356, 679 |
| SspI | AATATT | 1 cut(s) | 388 |
| SspMI | CTAG | 2 cut(s) | 35, 411 |
| SstI | GAGCTC | 1 cut(s) | 351 |
| StyI | CCWWGG | 2 cut(s) | 628, 740 |
| TaaI | ACNGT | 1 cut(s) | 584 |
| TaiI | ACGT | 4 cut(s) | 331, 475, 598, 794 |
| TaqI | TCGA | 6 cut(s) | 20, 252, 538, 685, 721, 840 |
| TasI | AATT | 3 cut(s) | 234, 301, 805 |
| TatI | WGTACW | 1 cut(s) | 755 |
| Tru1I | TTAA | 3 cut(s) | 90, 444, 895 |
| Tru9I | TTAA | 3 cut(s) | 90, 444, 895 |
| TscAI | CASTG | 1 cut(s) | 291 |
| TspDTI | ATGAA | 2 cut(s) | 332, 377 |
| TspGWI | ACGGA | 2 cut(s) | 592, 707 |
| TspRI | CASTG | 1 cut(s) | 291 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 881 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VneI | GTGCAC | 1 cut(s) | 573 |
| VpaK11BI | GGWCC | 2 cut(s) | 67, 527 |
| XceI | RCATGY | 1 cut(s) | 756 |
| XmnI | GAANNNNTTC | 1 cut(s) | 192 |
| XspI | CTAG | 2 cut(s) | 35, 411 |