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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 827 |
| AccB1I | GGYRCC | 1 cut(s) | 862 |
| AccBSI | CCGCTC | 3 cut(s) | 145, 202, 309 |
| AccII | CGCG | 1 cut(s) | 326 |
| AccIII | TCCGGA | 2 cut(s) | 470, 987 |
| AclI | AACGTT | 1 cut(s) | 1302 |
| AclWI | GGATC | 1 cut(s) | 584 |
| AcoI | YGGCCR | 3 cut(s) | 549, 699, 719 |
| AcsI | RAATTY | 2 cut(s) | 708, 1418 |
| AcuI | CTGAAG | 1 cut(s) | 719 |
| AcvI | CACGTG | 1 cut(s) | 787 |
| AcyI | GRCGYC | 2 cut(s) | 824, 863 |
| AfaI | GTAC | 2 cut(s) | 54, 1238 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 94, 455, 547, 599, 676, 697, 859 |
| AflIII | ACRYGT | 1 cut(s) | 1125 |
| AgsI | TTSAA | 3 cut(s) | 500, 969, 1366 |
| AjiI | CACGTC | 1 cut(s) | 1126 |
| AjnI | CCWGG | 6 cut(s) | 512, 598, 811, 921, 1095, 1119 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1278, 1310 |
| AleI | CACNNNNGTG | 1 cut(s) | 1356 |
| AluBI | AGCT | 8 cut(s) | 140, 197, 271, 299, 314, 364, 1145, 1151 |
| AluI | AGCT | 8 cut(s) | 140, 197, 271, 299, 314, 364, 1145, 1151 |
| Alw26I | GTCTC | 2 cut(s) | 14, 1282 |
| AlwI | GGATC | 1 cut(s) | 584 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 891 |
| Ama87I | CYCGRG | 1 cut(s) | 1109 |
| Aor13HI | TCCGGA | 2 cut(s) | 470, 987 |
| AoxI | GGCC | 7 cut(s) | 431, 549, 569, 699, 719, 814, 1083 |
| ApoI | RAATTY | 2 cut(s) | 708, 1418 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1395 |
| AspLEI | GCGC | 6 cut(s) | 115, 245, 326, 535, 865, 942 |
| AspS9I | GGNCC | 2 cut(s) | 570, 815 |
| AsuC2I | CCSGG | 3 cut(s) | 435, 450, 671 |
| AsuHPI | GGTGA | 2 cut(s) | 305, 386 |
| AsuNHI | GCTAGC | 1 cut(s) | 320 |
| AvaI | CYCGRG | 1 cut(s) | 1109 |
| AxyI | CCTNAGG | 1 cut(s) | 858 |
| BanI | GGYRCC | 1 cut(s) | 862 |
| BauI | CACGAG | 1 cut(s) | 11 |
| BbrPI | CACGTG | 1 cut(s) | 787 |
| BbsI | GAAGAC | 1 cut(s) | 1263 |
| BccI | CCATC | 5 cut(s) | 641, 1082, 1205, 1332, 1451 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 443, 477 |
| BciT130I | CCWGG | 6 cut(s) | 514, 600, 813, 923, 1097, 1121 |
| BciVI | GTATCC | 1 cut(s) | 467 |
| BcnI | CCSGG | 3 cut(s) | 435, 450, 671 |
| BcoDI | GTCTC | 2 cut(s) | 14, 1282 |
| BfaI | CTAG | 9 cut(s) | 89, 260, 272, 321, 399, 663, 791, 1116, 1328 |
| BfmI | CTRYAG | 3 cut(s) | 135, 365, 382 |
| BfoI | RGCGCY | 3 cut(s) | 246, 866, 943 |
| BfuI | GTATCC | 1 cut(s) | 467 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 76, 1178 |
| BlpI | GCTNAGC | 2 cut(s) | 141, 198 |
| Bme1390I | CCNGG | 9 cut(s) | 435, 450, 514, 600, 671, 813, 923, 1097, 1121 |
| BmeT110I | CYCGRG | 1 cut(s) | 1109 |
| BmgBI | CACGTC | 1 cut(s) | 1126 |
| BmgT120I | GGNCC | 2 cut(s) | 570, 815 |
| BmiI | GGNNCC | 4 cut(s) | 69, 280, 572, 864 |
| BmrFI | CCNGG | 9 cut(s) | 435, 450, 514, 600, 671, 813, 923, 1097, 1121 |
| BmsI | GCATC | 3 cut(s) | 23, 960, 1084 |
| BmtI | GCTAGC | 1 cut(s) | 324 |
| BpiI | GAAGAC | 1 cut(s) | 1263 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 112, 144 |
| BpmI | CTGGAG | 2 cut(s) | 496, 1217 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 141, 198 |
| BpuEI | CTTGAG | 2 cut(s) | 1064, 1131 |
| BpuMI | CCSGG | 3 cut(s) | 435, 450, 671 |
| BsaAI | YACGTR | 1 cut(s) | 787 |
| BsaHI | GRCGYC | 2 cut(s) | 824, 863 |
| BsaI | GGTCTC | 1 cut(s) | 1282 |
| BsaJI | CCNNGG | 4 cut(s) | 119, 159, 169, 282 |
| BsaWI | WCCGGW | 2 cut(s) | 470, 987 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 92, 122, 270, 300, 467, 497 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 94, 455, 547, 599, 676, 697, 859 |
| Bse118I | RCCGGY | 6 cut(s) | 526, 547, 567, 697, 717, 973 |
| Bse1I | ACTGG | 2 cut(s) | 1039, 1234 |
| Bse21I | CCTNAGG | 1 cut(s) | 858 |
| BseAI | TCCGGA | 2 cut(s) | 470, 987 |
| BseBI | CCWGG | 6 cut(s) | 514, 600, 813, 923, 1097, 1121 |
| BseDI | CCNNGG | 4 cut(s) | 119, 159, 169, 282 |
| BseGI | GGATG | 7 cut(s) | 38, 607, 633, 849, 996, 1200, 1228 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 94, 455, 547, 599, 676, 697, 859 |
| BseMII | CTCAG | 3 cut(s) | 132, 189, 872 |
| BseNI | ACTGG | 2 cut(s) | 1039, 1234 |
| BseX3I | CGGCCG | 1 cut(s) | 549 |
| BseYI | CCCAGC | 1 cut(s) | 177 |
| Bsh1236I | CGCG | 1 cut(s) | 326 |
| Bsh1285I | CGRYCG | 1 cut(s) | 552 |
| BshFI | GGCC | 7 cut(s) | 433, 551, 571, 701, 721, 816, 1085 |
| BshNI | GGYRCC | 1 cut(s) | 862 |
| BsiEI | CGRYCG | 1 cut(s) | 552 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1109 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 94, 455, 547, 599, 676, 697, 859 |
| BsmAI | GTCTC | 2 cut(s) | 14, 1282 |
| BsnI | GGCC | 7 cut(s) | 433, 551, 571, 701, 721, 816, 1085 |
| Bso31I | GGTCTC | 1 cut(s) | 1282 |
| BsoBI | CYCGRG | 1 cut(s) | 1109 |
| Bsp13I | TCCGGA | 2 cut(s) | 470, 987 |
| Bsp143I | GATC | 2 cut(s) | 589, 1434 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 141, 198 |
| BspANI | GGCC | 7 cut(s) | 433, 551, 571, 701, 721, 816, 1085 |
| BspCNI | CTCAG | 3 cut(s) | 133, 190, 871 |
| BspEI | TCCGGA | 2 cut(s) | 470, 987 |
| BspFNI | CGCG | 1 cut(s) | 326 |
| BspLI | GGNNCC | 4 cut(s) | 69, 280, 572, 864 |
| BspMAI | CTGCAG | 2 cut(s) | 369, 386 |
| BspOI | GCTAGC | 1 cut(s) | 324 |
| BspPI | GGATC | 1 cut(s) | 584 |
| BspT107I | GGYRCC | 1 cut(s) | 862 |
| BspTNI | GGTCTC | 1 cut(s) | 1282 |
| BsrBI | CCGCTC | 3 cut(s) | 145, 202, 309 |
| BsrFI | RCCGGY | 6 cut(s) | 526, 547, 567, 697, 717, 973 |
| BsrI | ACTGG | 2 cut(s) | 1039, 1234 |
| BssAI | RCCGGY | 6 cut(s) | 526, 547, 567, 697, 717, 973 |
| BssECI | CCNNGG | 4 cut(s) | 119, 159, 169, 282 |
| BssMI | GATC | 2 cut(s) | 589, 1434 |
| BssNI | GRCGYC | 2 cut(s) | 824, 863 |
| BssSI | CACGAG | 1 cut(s) | 11 |
| BssT1I | CCWWGG | 2 cut(s) | 169, 282 |
| Bst2BI | CACGAG | 1 cut(s) | 11 |
| Bst2UI | CCWGG | 6 cut(s) | 514, 600, 813, 923, 1097, 1121 |
| Bst4CI | ACNGT | 4 cut(s) | 136, 617, 983, 1135 |
| BstACI | GRCGYC | 2 cut(s) | 824, 863 |
| BstBAI | YACGTR | 1 cut(s) | 787 |
| BstC8I | GCNNGC | 7 cut(s) | 166, 222, 322, 723, 892, 1073, 1143 |
| BstDEI | CTNAG | 4 cut(s) | 141, 198, 858, 1174 |
| BstF5I | GGATG | 7 cut(s) | 38, 607, 633, 849, 996, 1200, 1228 |
| BstFNI | CGCG | 1 cut(s) | 326 |
| BstH2I | RGCGCY | 3 cut(s) | 246, 866, 943 |
| BstHHI | GCGC | 6 cut(s) | 115, 245, 326, 535, 865, 942 |
| BstKTI | GATC | 2 cut(s) | 592, 1437 |
| BstMAI | GTCTC | 2 cut(s) | 14, 1282 |
| BstMBI | GATC | 2 cut(s) | 589, 1434 |
| BstMCI | CGRYCG | 1 cut(s) | 552 |
| BstNI | CCWGG | 6 cut(s) | 514, 600, 813, 923, 1097, 1121 |
| BstNSI | RCATGY | 2 cut(s) | 168, 424 |
| BstSCI | CCNGG | 9 cut(s) | 433, 448, 512, 598, 669, 811, 921, 1095, 1119 |
| BstSFI | CTRYAG | 3 cut(s) | 135, 365, 382 |
| BstUI | CGCG | 1 cut(s) | 326 |
| BstV2I | GAAGAC | 1 cut(s) | 1263 |
| BstX2I | RGATCY | 1 cut(s) | 589 |
| BstYI | RGATCY | 1 cut(s) | 589 |
| BstZI | CGGCCG | 1 cut(s) | 549 |
| Bsu36I | CCTNAGG | 1 cut(s) | 858 |
| BsuI | GTATCC | 1 cut(s) | 467 |
| BsuRI | GGCC | 7 cut(s) | 433, 551, 571, 701, 721, 816, 1085 |
| BtgZI | GCGATG | 1 cut(s) | 1460 |
| BtrI | CACGTC | 1 cut(s) | 1126 |
| BtsCI | GGATG | 7 cut(s) | 38, 607, 633, 849, 996, 1200, 1228 |
| BtsI | GCAGTG | 2 cut(s) | 86, 874 |
| BtsIMutI | CAGTG | 4 cut(s) | 86, 818, 874, 892 |
| Cac8I | GCNNGC | 7 cut(s) | 166, 222, 322, 723, 892, 1073, 1143 |
| CaiI | CAGNNNCTG | 1 cut(s) | 891 |
| CfoI | GCGC | 6 cut(s) | 115, 245, 326, 535, 865, 942 |
| Cfr10I | RCCGGY | 6 cut(s) | 526, 547, 567, 697, 717, 973 |
| Cfr13I | GGNCC | 2 cut(s) | 570, 815 |
| CseI | GACGC | 2 cut(s) | 883, 895 |
| Csp6I | GTAC | 2 cut(s) | 53, 1237 |
| CviAII | CATG | 2 cut(s) | 165, 421 |
| CviQI | GTAC | 2 cut(s) | 53, 1237 |
| DdeI | CTNAG | 4 cut(s) | 141, 198, 858, 1174 |
| DinI | GGCGCC | 1 cut(s) | 864 |
| DpnI | GATC | 2 cut(s) | 591, 1436 |
| DpnII | GATC | 2 cut(s) | 589, 1434 |
| EaeI | YGGCCR | 3 cut(s) | 549, 699, 719 |
| EagI | CGGCCG | 1 cut(s) | 549 |
| EciI | GGCGGA | 7 cut(s) | 32, 80, 113, 291, 319, 374, 475 |
| EclXI | CGGCCG | 1 cut(s) | 549 |
| Eco130I | CCWWGG | 2 cut(s) | 169, 282 |
| Eco31I | GGTCTC | 1 cut(s) | 1282 |
| Eco32I | GATATC | 1 cut(s) | 1046 |
| Eco52I | CGGCCG | 1 cut(s) | 549 |
| Eco57I | CTGAAG | 1 cut(s) | 719 |
| Eco72I | CACGTG | 1 cut(s) | 787 |
| Eco81I | CCTNAGG | 1 cut(s) | 858 |
| Eco88I | CYCGRG | 1 cut(s) | 1109 |
| EcoRI | GAATTC | 1 cut(s) | 1418 |
| EcoRII | CCWGG | 6 cut(s) | 512, 598, 811, 921, 1095, 1119 |
| EcoRV | GATATC | 1 cut(s) | 1046 |
| EcoT14I | CCWWGG | 2 cut(s) | 169, 282 |
| EgeI | GGCGCC | 1 cut(s) | 864 |
| EheI | GGCGCC | 1 cut(s) | 864 |
| ErhI | CCWWGG | 2 cut(s) | 169, 282 |
| FaeI | CATG | 2 cut(s) | 168, 424 |
| FaiI | YATR | 8 cut(s) | 151, 166, 422, 1103, 1218, 1220, 1247, 1344 |
| FatI | CATG | 2 cut(s) | 164, 420 |
| FauI | CCCGC | 1 cut(s) | 227 |
| FauNDI | CATATG | 1 cut(s) | 1218 |
| FokI | GGATG | 7 cut(s) | 45, 594, 620, 836, 1003, 1187, 1235 |
| FspBI | CTAG | 9 cut(s) | 89, 260, 272, 321, 399, 663, 791, 1116, 1328 |
| GlaI | GCGC | 6 cut(s) | 114, 244, 325, 534, 864, 941 |
| GsaI | CCCAGC | 1 cut(s) | 181 |
| GsuI | CTGGAG | 2 cut(s) | 496, 1217 |
| HaeII | RGCGCY | 3 cut(s) | 246, 866, 943 |
| HaeIII | GGCC | 7 cut(s) | 433, 551, 571, 701, 721, 816, 1085 |
| HgaI | GACGC | 2 cut(s) | 883, 895 |
| HhaI | GCGC | 6 cut(s) | 115, 245, 326, 535, 865, 942 |
| Hin1I | GRCGYC | 2 cut(s) | 824, 863 |
| Hin1II | CATG | 2 cut(s) | 168, 424 |
| Hin6I | GCGC | 6 cut(s) | 113, 243, 324, 533, 863, 940 |
| HinP1I | GCGC | 6 cut(s) | 113, 243, 324, 533, 863, 940 |
| HincII | GTYRAC | 4 cut(s) | 559, 959, 979, 1131 |
| HindII | GTYRAC | 4 cut(s) | 559, 959, 979, 1131 |
| HindIII | AAGCTT | 1 cut(s) | 1149 |
| HinfI | GANTC | 9 cut(s) | 7, 509, 555, 581, 666, 1092, 1210, 1226, 1310 |
| HpaI | GTTAAC | 1 cut(s) | 1131 |
| HphI | GGTGA | 2 cut(s) | 305, 386 |
| Hpy166II | GTNNAC | 7 cut(s) | 559, 605, 620, 784, 959, 979, 1131 |
| Hpy188I | TCNGA | 5 cut(s) | 132, 160, 645, 714, 1390 |
| Hpy8I | GTNNAC | 7 cut(s) | 559, 605, 620, 784, 959, 979, 1131 |
| Hpy99I | CGWCG | 1 cut(s) | 458 |
| HpyAV | CCTTC | 7 cut(s) | 339, 364, 371, 432, 697, 792, 1260 |
| HpyCH4III | ACNGT | 4 cut(s) | 136, 617, 983, 1135 |
| HpyCH4IV | ACGT | 5 cut(s) | 786, 824, 882, 1125, 1302 |
| HpyCH4V | TGCA | 4 cut(s) | 367, 384, 394, 652 |
| HpyF3I | CTNAG | 4 cut(s) | 141, 198, 858, 1174 |
| HpySE526I | ACGT | 5 cut(s) | 786, 824, 882, 1125, 1302 |
| Hsp92I | GRCGYC | 2 cut(s) | 824, 863 |
| Hsp92II | CATG | 2 cut(s) | 168, 424 |
| HspAI | GCGC | 6 cut(s) | 113, 243, 324, 533, 863, 940 |
| KasI | GGCGCC | 1 cut(s) | 862 |
| Kpn2I | TCCGGA | 2 cut(s) | 470, 987 |
| KspAI | GTTAAC | 1 cut(s) | 1131 |
| Kzo9I | GATC | 2 cut(s) | 589, 1434 |
| LmnI | GCTCC | 7 cut(s) | 41, 67, 278, 306, 311, 361, 1236 |
| LweI | GCATC | 3 cut(s) | 23, 960, 1084 |
| MaeI | CTAG | 9 cut(s) | 89, 260, 272, 321, 399, 663, 791, 1116, 1328 |
| MaeII | ACGT | 5 cut(s) | 786, 824, 882, 1125, 1302 |
| MaeIII | GTNAC | 2 cut(s) | 995, 1307 |
| MalI | GATC | 2 cut(s) | 591, 1436 |
| MbiI | CCGCTC | 3 cut(s) | 145, 202, 309 |
| MboI | GATC | 2 cut(s) | 589, 1434 |
| MboII | GAAGA | 4 cut(s) | 590, 1265, 1268, 1298 |
| MflI | RGATCY | 1 cut(s) | 589 |
| MluCI | AATT | 4 cut(s) | 708, 1007, 1104, 1418 |
| Mly113I | GGCGCC | 1 cut(s) | 863 |
| MlyI | GAGTC | 5 cut(s) | 16, 503, 564, 1204, 1304 |
| MroI | TCCGGA | 2 cut(s) | 470, 987 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1395 |
| MseI | TTAA | 4 cut(s) | 705, 1130, 1404, 1412 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1205, 1221, 1356 |
| MspA1I | CMGCKG | 3 cut(s) | 248, 291, 933 |
| MspR9I | CCNGG | 9 cut(s) | 435, 450, 514, 600, 671, 813, 923, 1097, 1121 |
| MvaI | CCWGG | 6 cut(s) | 514, 600, 813, 923, 1097, 1121 |
| MvnI | CGCG | 1 cut(s) | 326 |
| NarI | GGCGCC | 1 cut(s) | 863 |
| NciI | CCSGG | 3 cut(s) | 435, 450, 671 |
| NdeI | CATATG | 1 cut(s) | 1218 |
| NdeII | GATC | 2 cut(s) | 589, 1434 |
| NheI | GCTAGC | 1 cut(s) | 320 |
| NlaIII | CATG | 2 cut(s) | 168, 424 |
| NlaIV | GGNNCC | 4 cut(s) | 69, 280, 572, 864 |
| NmeAIII | GCCGAG | 2 cut(s) | 144, 280 |
| NmuCI | GTSAC | 1 cut(s) | 1307 |
| NspI | RCATGY | 2 cut(s) | 168, 424 |
| OliI | CACNNNNGTG | 1 cut(s) | 1356 |
| PaeI | GCATGC | 1 cut(s) | 168 |
| PaeR7I | CTCGAG | 1 cut(s) | 1109 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1395 |
| PfeI | GAWTC | 4 cut(s) | 581, 666, 1092, 1226 |
| PfoI | TCCNGGA | 3 cut(s) | 512, 669, 1095 |
| PleI | GAGTC | 5 cut(s) | 15, 503, 563, 1204, 1304 |
| PluTI | GGCGCC | 1 cut(s) | 866 |
| PmaCI | CACGTG | 1 cut(s) | 787 |
| PmlI | CACGTG | 1 cut(s) | 787 |
| PpsI | GAGTC | 5 cut(s) | 15, 503, 563, 1204, 1304 |
| Ppu21I | YACGTR | 1 cut(s) | 787 |
| Psp1406I | AACGTT | 1 cut(s) | 1302 |
| Psp6I | CCWGG | 6 cut(s) | 512, 598, 811, 921, 1095, 1119 |
| PspCI | CACGTG | 1 cut(s) | 787 |
| PspFI | CCCAGC | 1 cut(s) | 177 |
| PspGI | CCWGG | 6 cut(s) | 512, 598, 811, 921, 1095, 1119 |
| PspN4I | GGNNCC | 4 cut(s) | 69, 280, 572, 864 |
| PspPI | GGNCC | 2 cut(s) | 570, 815 |
| PstI | CTGCAG | 2 cut(s) | 369, 386 |
| PstNI | CAGNNNCTG | 1 cut(s) | 891 |
| PsuI | RGATCY | 1 cut(s) | 589 |
| RsaI | GTAC | 2 cut(s) | 54, 1238 |
| RsaNI | GTAC | 2 cut(s) | 53, 1237 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1205, 1221, 1356 |
| SaqAI | TTAA | 4 cut(s) | 705, 1130, 1404, 1412 |
| Sau3AI | GATC | 2 cut(s) | 589, 1434 |
| Sau96I | GGNCC | 2 cut(s) | 570, 815 |
| SchI | GAGTC | 5 cut(s) | 16, 503, 564, 1204, 1304 |
| ScrFI | CCNGG | 9 cut(s) | 435, 450, 514, 600, 671, 813, 923, 1097, 1121 |
| SfaNI | GCATC | 3 cut(s) | 23, 960, 1084 |
| SfcI | CTRYAG | 3 cut(s) | 135, 365, 382 |
| SfoI | GGCGCC | 1 cut(s) | 864 |
| Sfr274I | CTCGAG | 1 cut(s) | 1109 |
| SlaI | CTCGAG | 1 cut(s) | 1109 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1205, 1221, 1356 |
| SmlI | CTYRAG | 3 cut(s) | 1079, 1109, 1146 |
| SmoI | CTYRAG | 3 cut(s) | 1079, 1109, 1146 |
| SphI | GCATGC | 1 cut(s) | 168 |
| Sse9I | AATT | 4 cut(s) | 708, 1007, 1104, 1418 |
| SspDI | GGCGCC | 1 cut(s) | 862 |
| SspMI | CTAG | 9 cut(s) | 89, 260, 272, 321, 399, 663, 791, 1116, 1328 |
| StyD4I | CCNGG | 9 cut(s) | 433, 448, 512, 598, 669, 811, 921, 1095, 1119 |
| StyI | CCWWGG | 2 cut(s) | 169, 282 |
| TaaI | ACNGT | 4 cut(s) | 136, 617, 983, 1135 |
| TaiI | ACGT | 5 cut(s) | 789, 827, 885, 1128, 1305 |
| TaqI | TCGA | 3 cut(s) | 521, 1110, 1284 |
| TaqII | GACCGA | 1 cut(s) | 944 |
| TasI | AATT | 4 cut(s) | 708, 1007, 1104, 1418 |
| TauI | GCSGC | 2 cut(s) | 248, 491 |
| TfiI | GAWTC | 4 cut(s) | 581, 666, 1092, 1226 |
| Tru1I | TTAA | 4 cut(s) | 705, 1130, 1404, 1412 |
| Tru9I | TTAA | 4 cut(s) | 705, 1130, 1404, 1412 |
| TscAI | CASTG | 4 cut(s) | 86, 825, 881, 892 |
| TseFI | GTSAC | 1 cut(s) | 1307 |
| Tsp45I | GTSAC | 1 cut(s) | 1307 |
| TspDTI | ATGAA | 2 cut(s) | 1262, 1266 |
| TspGWI | ACGGA | 4 cut(s) | 471, 574, 629, 899 |
| TspRI | CASTG | 4 cut(s) | 86, 825, 881, 892 |
| XapI | RAATTY | 2 cut(s) | 708, 1418 |
| XbaI | TCTAGA | 1 cut(s) | 398 |
| XceI | RCATGY | 2 cut(s) | 168, 424 |
| XhoI | CTCGAG | 1 cut(s) | 1109 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1395 |
| XspI | CTAG | 9 cut(s) | 89, 260, 272, 321, 399, 663, 791, 1116, 1328 |
| ZraI | GACGTC | 1 cut(s) | 825 |