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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 506 |
| AcsI | RAATTY | 2 cut(s) | 371, 383 |
| AfaI | GTAC | 1 cut(s) | 206 |
| AgsI | TTSAA | 3 cut(s) | 124, 254, 331 |
| AhlI | ACTAGT | 1 cut(s) | 295 |
| AjiI | CACGTC | 1 cut(s) | 94 |
| AjnI | CCWGG | 2 cut(s) | 63, 87 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 246, 278 |
| AleI | CACNNNNGTG | 1 cut(s) | 321 |
| AluBI | AGCT | 4 cut(s) | 113, 119, 517, 527 |
| AluI | AGCT | 4 cut(s) | 113, 119, 517, 527 |
| Alw21I | GWGCWC | 1 cut(s) | 519 |
| Alw26I | GTCTC | 2 cut(s) | 250, 574 |
| AlwI | GGATC | 1 cut(s) | 506 |
| Ama87I | CYCGRG | 1 cut(s) | 77 |
| AoxI | GGCC | 1 cut(s) | 51 |
| ApeKI | GCWGC | 1 cut(s) | 137 |
| ApoI | RAATTY | 2 cut(s) | 371, 383 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 360 |
| AvaI | CYCGRG | 1 cut(s) | 77 |
| BanII | GRGCYC | 2 cut(s) | 8, 519 |
| BbsI | GAAGAC | 1 cut(s) | 231 |
| Bbv12I | GWGCWC | 1 cut(s) | 519 |
| BbvI | GCAGC | 1 cut(s) | 149 |
| BccI | CCATC | 5 cut(s) | 50, 173, 297, 451, 489 |
| BciT130I | CCWGG | 2 cut(s) | 65, 89 |
| BciVI | GTATCC | 1 cut(s) | 61 |
| BcoDI | GTCTC | 2 cut(s) | 250, 574 |
| BcuI | ACTAGT | 1 cut(s) | 295 |
| BfaI | CTAG | 2 cut(s) | 84, 296 |
| BfuI | GTATCC | 1 cut(s) | 61 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 146 |
| BisI | GCNGC | 1 cut(s) | 138 |
| BlsI | GCNGC | 1 cut(s) | 139 |
| Bme1390I | CCNGG | 2 cut(s) | 65, 89 |
| BmeT110I | CYCGRG | 1 cut(s) | 77 |
| BmgBI | CACGTC | 1 cut(s) | 94 |
| BmrFI | CCNGG | 2 cut(s) | 65, 89 |
| BmsI | GCATC | 2 cut(s) | 52, 397 |
| BpiI | GAAGAC | 1 cut(s) | 231 |
| BpmI | CTGGAG | 1 cut(s) | 185 |
| BpuEI | CTTGAG | 2 cut(s) | 32, 99 |
| Bsa29I | ATCGAT | 1 cut(s) | 480 |
| BsaI | GGTCTC | 2 cut(s) | 250, 574 |
| Bse1I | ACTGG | 1 cut(s) | 202 |
| BseBI | CCWGG | 2 cut(s) | 65, 89 |
| BseCI | ATCGAT | 1 cut(s) | 480 |
| BseGI | GGATG | 4 cut(s) | 168, 270, 500, 555 |
| BseNI | ACTGG | 1 cut(s) | 202 |
| BseXI | GCAGC | 1 cut(s) | 149 |
| BshFI | GGCC | 1 cut(s) | 53 |
| BshVI | ATCGAT | 1 cut(s) | 480 |
| BsiHKAI | GWGCWC | 1 cut(s) | 519 |
| BsiHKCI | CYCGRG | 1 cut(s) | 77 |
| BsmAI | GTCTC | 2 cut(s) | 250, 574 |
| BsnI | GGCC | 1 cut(s) | 53 |
| Bso31I | GGTCTC | 2 cut(s) | 250, 574 |
| BsoBI | CYCGRG | 1 cut(s) | 77 |
| Bsp1286I | GDGCHC | 2 cut(s) | 8, 519 |
| Bsp143I | GATC | 1 cut(s) | 498 |
| BspANI | GGCC | 1 cut(s) | 53 |
| BspDI | ATCGAT | 1 cut(s) | 480 |
| BspPI | GGATC | 1 cut(s) | 506 |
| BspTNI | GGTCTC | 2 cut(s) | 250, 574 |
| BsrI | ACTGG | 1 cut(s) | 202 |
| BssMI | GATC | 1 cut(s) | 498 |
| Bst2UI | CCWGG | 2 cut(s) | 65, 89 |
| Bst4CI | ACNGT | 1 cut(s) | 103 |
| BstC8I | GCNNGC | 2 cut(s) | 41, 111 |
| BstDEI | CTNAG | 2 cut(s) | 142, 230 |
| BstF5I | GGATG | 4 cut(s) | 168, 270, 500, 555 |
| BstKTI | GATC | 1 cut(s) | 501 |
| BstMAI | GTCTC | 2 cut(s) | 250, 574 |
| BstMBI | GATC | 1 cut(s) | 498 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 125, 134, 146 |
| BstNI | CCWGG | 2 cut(s) | 65, 89 |
| BstSCI | CCNGG | 2 cut(s) | 63, 87 |
| BstV1I | GCAGC | 1 cut(s) | 149 |
| BstV2I | GAAGAC | 1 cut(s) | 231 |
| Bsu15I | ATCGAT | 1 cut(s) | 480 |
| BsuI | GTATCC | 1 cut(s) | 61 |
| BsuRI | GGCC | 1 cut(s) | 53 |
| BsuTUI | ATCGAT | 1 cut(s) | 480 |
| BtgZI | GCGATG | 1 cut(s) | 425 |
| BtrI | CACGTC | 1 cut(s) | 94 |
| BtsCI | GGATG | 4 cut(s) | 168, 270, 500, 555 |
| Cac8I | GCNNGC | 2 cut(s) | 41, 111 |
| ClaI | ATCGAT | 1 cut(s) | 480 |
| Csp6I | GTAC | 1 cut(s) | 205 |
| CviAII | CATG | 2 cut(s) | 512, 548 |
| CviQI | GTAC | 1 cut(s) | 205 |
| DdeI | CTNAG | 2 cut(s) | 142, 230 |
| DpnI | GATC | 1 cut(s) | 500 |
| DpnII | GATC | 1 cut(s) | 498 |
| Ecl136II | GAGCTC | 1 cut(s) | 517 |
| Eco24I | GRGCYC | 2 cut(s) | 8, 519 |
| Eco31I | GGTCTC | 2 cut(s) | 250, 574 |
| Eco32I | GATATC | 1 cut(s) | 400 |
| Eco53kI | GAGCTC | 1 cut(s) | 517 |
| Eco88I | CYCGRG | 1 cut(s) | 77 |
| EcoICRI | GAGCTC | 1 cut(s) | 517 |
| EcoRI | GAATTC | 1 cut(s) | 383 |
| EcoRII | CCWGG | 2 cut(s) | 63, 87 |
| EcoRV | GATATC | 1 cut(s) | 400 |
| EcoT38I | GRGCYC | 2 cut(s) | 8, 519 |
| FaeI | CATG | 2 cut(s) | 515, 551 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 213, 245 |
| FatI | CATG | 2 cut(s) | 511, 547 |
| FauNDI | CATATG | 1 cut(s) | 186 |
| Fnu4HI | GCNGC | 1 cut(s) | 138 |
| FokI | GGATG | 4 cut(s) | 155, 257, 507, 542 |
| FriOI | GRGCYC | 2 cut(s) | 8, 519 |
| Fsp4HI | GCNGC | 1 cut(s) | 138 |
| FspBI | CTAG | 2 cut(s) | 84, 296 |
| GluI | GCNGC | 1 cut(s) | 138 |
| GsuI | CTGGAG | 1 cut(s) | 185 |
| HaeIII | GGCC | 1 cut(s) | 53 |
| Hin1II | CATG | 2 cut(s) | 515, 551 |
| HindIII | AAGCTT | 1 cut(s) | 117 |
| HinfI | GANTC | 6 cut(s) | 60, 73, 178, 278, 427, 477 |
| Hpy188III | TCNNGA | 5 cut(s) | 9, 29, 77, 290, 579 |
| HpyAV | CCTTC | 2 cut(s) | 228, 448 |
| HpyCH4III | ACNGT | 1 cut(s) | 103 |
| HpyCH4IV | ACGT | 1 cut(s) | 93 |
| HpyCH4V | TGCA | 1 cut(s) | 464 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 125, 134, 146 |
| HpyF3I | CTNAG | 2 cut(s) | 142, 230 |
| HpySE526I | ACGT | 1 cut(s) | 93 |
| Hsp92II | CATG | 2 cut(s) | 515, 551 |
| Kzo9I | GATC | 1 cut(s) | 498 |
| LmnI | GCTCC | 2 cut(s) | 204, 524 |
| LpnPI | CCDG | 8 cut(s) | 50, 53, 74, 77, 101, 215, 296, 303 |
| Lsp1109I | GCAGC | 1 cut(s) | 149 |
| LweI | GCATC | 2 cut(s) | 52, 397 |
| MaeI | CTAG | 2 cut(s) | 84, 296 |
| MaeII | ACGT | 1 cut(s) | 93 |
| MaeIII | GTNAC | 2 cut(s) | 275, 507 |
| MalI | GATC | 1 cut(s) | 500 |
| MboI | GATC | 1 cut(s) | 498 |
| MboII | GAAGA | 3 cut(s) | 233, 236, 266 |
| MhlI | GDGCHC | 2 cut(s) | 8, 519 |
| MluCI | AATT | 4 cut(s) | 193, 371, 383, 574 |
| MlyI | GAGTC | 3 cut(s) | 172, 272, 421 |
| MnlI | CCTC | 4 cut(s) | 139, 323, 417, 452 |
| MroXI | GAANNNNTTC | 1 cut(s) | 360 |
| MseI | TTAA | 2 cut(s) | 369, 377 |
| MslI | CAYNNNNRTG | 3 cut(s) | 173, 321, 560 |
| MspR9I | CCNGG | 2 cut(s) | 65, 89 |
| MvaI | CCWGG | 2 cut(s) | 65, 89 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 125, 134, 146 |
| NdeI | CATATG | 1 cut(s) | 186 |
| NdeII | GATC | 1 cut(s) | 498 |
| NlaIII | CATG | 2 cut(s) | 515, 551 |
| NmuCI | GTSAC | 1 cut(s) | 275 |
| OliI | CACNNNNGTG | 1 cut(s) | 321 |
| PaeR7I | CTCGAG | 1 cut(s) | 77 |
| PdmI | GAANNNNTTC | 1 cut(s) | 360 |
| PfeI | GAWTC | 3 cut(s) | 60, 73, 477 |
| PfoI | TCCNGGA | 1 cut(s) | 63 |
| PkrI | GCNGC | 1 cut(s) | 139 |
| PleI | GAGTC | 3 cut(s) | 172, 272, 421 |
| PpsI | GAGTC | 3 cut(s) | 172, 272, 421 |
| Psp124BI | GAGCTC | 1 cut(s) | 519 |
| Psp6I | CCWGG | 2 cut(s) | 63, 87 |
| PspGI | CCWGG | 2 cut(s) | 63, 87 |
| RsaI | GTAC | 1 cut(s) | 206 |
| RsaNI | GTAC | 1 cut(s) | 205 |
| RseI | CAYNNNNRTG | 3 cut(s) | 173, 321, 560 |
| SacI | GAGCTC | 1 cut(s) | 519 |
| SaqAI | TTAA | 2 cut(s) | 369, 377 |
| SatI | GCNGC | 1 cut(s) | 138 |
| Sau3AI | GATC | 1 cut(s) | 498 |
| SchI | GAGTC | 3 cut(s) | 172, 272, 421 |
| ScrFI | CCNGG | 2 cut(s) | 65, 89 |
| SduI | GDGCHC | 2 cut(s) | 8, 519 |
| SfaNI | GCATC | 2 cut(s) | 52, 397 |
| Sfr274I | CTCGAG | 1 cut(s) | 77 |
| SlaI | CTCGAG | 1 cut(s) | 77 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 173, 321, 560 |
| SmlI | CTYRAG | 3 cut(s) | 47, 77, 114 |
| SmoI | CTYRAG | 3 cut(s) | 47, 77, 114 |
| SpeI | ACTAGT | 1 cut(s) | 295 |
| Sse9I | AATT | 4 cut(s) | 193, 371, 383, 574 |
| SspMI | CTAG | 2 cut(s) | 84, 296 |
| SstI | GAGCTC | 1 cut(s) | 519 |
| StyD4I | CCNGG | 2 cut(s) | 63, 87 |
| TaaI | ACNGT | 1 cut(s) | 103 |
| TaiI | ACGT | 1 cut(s) | 96 |
| TaqI | TCGA | 4 cut(s) | 78, 475, 480, 578 |
| TasI | AATT | 4 cut(s) | 193, 371, 383, 574 |
| TfiI | GAWTC | 3 cut(s) | 60, 73, 477 |
| Tru1I | TTAA | 2 cut(s) | 369, 377 |
| Tru9I | TTAA | 2 cut(s) | 369, 377 |
| TseFI | GTSAC | 1 cut(s) | 275 |
| TseI | GCWGC | 1 cut(s) | 137 |
| Tsp45I | GTSAC | 1 cut(s) | 275 |
| TspDTI | ATGAA | 5 cut(s) | 230, 234, 545, 555, 581 |
| TspGWI | ACGGA | 1 cut(s) | 263 |
| XapI | RAATTY | 2 cut(s) | 371, 383 |
| XhoI | CTCGAG | 1 cut(s) | 77 |
| XmnI | GAANNNNTTC | 1 cut(s) | 360 |
| XspI | CTAG | 2 cut(s) | 84, 296 |