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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 738 |
| AccII | CGCG | 1 cut(s) | 720 |
| AccIII | TCCGGA | 1 cut(s) | 538 |
| AciI | CCGC | 4 cut(s) | 250, 642, 718, 720 |
| AclWI | GGATC | 1 cut(s) | 510 |
| AfaI | GTAC | 1 cut(s) | 599 |
| AgsI | TTSAA | 2 cut(s) | 265, 676 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 177, 209 |
| AluBI | AGCT | 3 cut(s) | 451, 461, 775 |
| AluI | AGCT | 3 cut(s) | 451, 461, 775 |
| Alw21I | GWGCWC | 1 cut(s) | 453 |
| Alw26I | GTCTC | 4 cut(s) | 181, 385, 618, 751 |
| AlwI | GGATC | 1 cut(s) | 510 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 538 |
| AoxI | GGCC | 1 cut(s) | 571 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 294 |
| AspLEI | GCGC | 2 cut(s) | 672, 739 |
| AsuC2I | CCSGG | 1 cut(s) | 589 |
| AsuHPI | GGTGA | 1 cut(s) | 568 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AxyI | CCTNAGG | 1 cut(s) | 618 |
| BanII | GRGCYC | 1 cut(s) | 453 |
| BbsI | GAAGAC | 2 cut(s) | 162, 365 |
| Bbv12I | GWGCWC | 1 cut(s) | 453 |
| BccI | CCATC | 3 cut(s) | 92, 231, 385 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 404, 438 |
| BcnI | CCSGG | 1 cut(s) | 589 |
| BcoDI | GTCTC | 4 cut(s) | 181, 385, 618, 751 |
| BfaI | CTAG | 2 cut(s) | 126, 227 |
| BfoI | RGCGCY | 1 cut(s) | 673 |
| Bme1390I | CCNGG | 1 cut(s) | 589 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmiI | GGNNCC | 2 cut(s) | 624, 786 |
| BmrFI | CCNGG | 1 cut(s) | 589 |
| BmrI | ACTGGG | 1 cut(s) | 604 |
| BmsI | GCATC | 1 cut(s) | 331 |
| BmuI | ACTGGG | 1 cut(s) | 604 |
| BpiI | GAAGAC | 2 cut(s) | 162, 365 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BpuMI | CCSGG | 1 cut(s) | 589 |
| Bsa29I | ATCGAT | 1 cut(s) | 414 |
| BsaI | GGTCTC | 1 cut(s) | 181 |
| BsaJI | CCNNGG | 2 cut(s) | 519, 718 |
| BsaWI | WCCGGW | 1 cut(s) | 538 |
| Bse1I | ACTGG | 3 cut(s) | 49, 604, 610 |
| Bse21I | CCTNAGG | 1 cut(s) | 618 |
| BseAI | TCCGGA | 1 cut(s) | 538 |
| BseCI | ATCGAT | 1 cut(s) | 414 |
| BseDI | CCNNGG | 2 cut(s) | 519, 718 |
| BseMII | CTCAG | 1 cut(s) | 632 |
| BseNI | ACTGG | 3 cut(s) | 49, 604, 610 |
| BseRI | GAGGAG | 1 cut(s) | 606 |
| BsgI | GTGCAG | 1 cut(s) | 696 |
| Bsh1236I | CGCG | 1 cut(s) | 720 |
| Bsh1285I | CGRYCG | 1 cut(s) | 596 |
| BshFI | GGCC | 1 cut(s) | 573 |
| BshVI | ATCGAT | 1 cut(s) | 414 |
| BsiEI | CGRYCG | 1 cut(s) | 596 |
| BsiHKAI | GWGCWC | 1 cut(s) | 453 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 2 cut(s) | 539, 589 |
| BslFI | GGGAC | 2 cut(s) | 592, 709 |
| BsmAI | GTCTC | 4 cut(s) | 181, 385, 618, 751 |
| BsmBI | CGTCTC | 1 cut(s) | 385 |
| BsmFI | GGGAC | 2 cut(s) | 592, 709 |
| BsnI | GGCC | 1 cut(s) | 573 |
| Bso31I | GGTCTC | 1 cut(s) | 181 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 453 |
| Bsp13I | TCCGGA | 1 cut(s) | 538 |
| Bsp143I | GATC | 3 cut(s) | 333, 515, 581 |
| BspACI | CCGC | 4 cut(s) | 250, 642, 718, 720 |
| BspANI | GGCC | 1 cut(s) | 573 |
| BspCNI | CTCAG | 1 cut(s) | 631 |
| BspDI | ATCGAT | 1 cut(s) | 414 |
| BspEI | TCCGGA | 1 cut(s) | 538 |
| BspFNI | CGCG | 1 cut(s) | 720 |
| BspHI | TCATGA | 1 cut(s) | 445 |
| BspLI | GGNNCC | 2 cut(s) | 624, 786 |
| BspPI | GGATC | 1 cut(s) | 510 |
| BspTNI | GGTCTC | 1 cut(s) | 181 |
| BsrI | ACTGG | 3 cut(s) | 49, 604, 610 |
| BssECI | CCNNGG | 2 cut(s) | 519, 718 |
| BssMI | GATC | 3 cut(s) | 333, 515, 581 |
| Bst4CI | ACNGT | 4 cut(s) | 271, 597, 649, 762 |
| BstC8I | GCNNGC | 4 cut(s) | 634, 727, 731, 735 |
| BstDEI | CTNAG | 3 cut(s) | 399, 564, 618 |
| BstDSI | CCRYGG | 2 cut(s) | 519, 718 |
| BstFNI | CGCG | 1 cut(s) | 720 |
| BstH2I | RGCGCY | 1 cut(s) | 673 |
| BstHHI | GCGC | 2 cut(s) | 672, 739 |
| BstKTI | GATC | 3 cut(s) | 336, 518, 584 |
| BstMAI | GTCTC | 4 cut(s) | 181, 385, 618, 751 |
| BstMBI | GATC | 3 cut(s) | 333, 515, 581 |
| BstMCI | CGRYCG | 1 cut(s) | 596 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 726 |
| BstSCI | CCNGG | 1 cut(s) | 587 |
| BstUI | CGCG | 1 cut(s) | 720 |
| BstV2I | GAAGAC | 2 cut(s) | 162, 365 |
| BstX2I | RGATCY | 1 cut(s) | 515 |
| BstYI | RGATCY | 1 cut(s) | 515 |
| Bsu15I | ATCGAT | 1 cut(s) | 414 |
| Bsu36I | CCTNAGG | 1 cut(s) | 618 |
| BsuRI | GGCC | 1 cut(s) | 573 |
| BsuTUI | ATCGAT | 1 cut(s) | 414 |
| BtgI | CCRYGG | 2 cut(s) | 519, 718 |
| BtgZI | GCGATG | 1 cut(s) | 359 |
| BtsIMutI | CAGTG | 1 cut(s) | 645 |
| Cac8I | GCNNGC | 4 cut(s) | 634, 727, 731, 735 |
| CciI | TCATGA | 1 cut(s) | 445 |
| CfoI | GCGC | 2 cut(s) | 672, 739 |
| Cfr42I | CCGCGG | 1 cut(s) | 721 |
| ClaI | ATCGAT | 1 cut(s) | 414 |
| Csp6I | GTAC | 1 cut(s) | 598 |
| CviAII | CATG | 2 cut(s) | 446, 482 |
| CviQI | GTAC | 1 cut(s) | 598 |
| DdeI | CTNAG | 3 cut(s) | 399, 564, 618 |
| DpnI | GATC | 3 cut(s) | 335, 517, 583 |
| DpnII | GATC | 3 cut(s) | 333, 515, 581 |
| Ecl136II | GAGCTC | 1 cut(s) | 451 |
| Eco147I | AGGCCT | 1 cut(s) | 573 |
| Eco24I | GRGCYC | 1 cut(s) | 453 |
| Eco31I | GGTCTC | 1 cut(s) | 181 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 1 cut(s) | 451 |
| Eco81I | CCTNAGG | 1 cut(s) | 618 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 451 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT38I | GRGCYC | 1 cut(s) | 453 |
| Esp3I | CGTCTC | 1 cut(s) | 385 |
| FaeI | CATG | 2 cut(s) | 449, 485 |
| FaqI | GGGAC | 2 cut(s) | 592, 709 |
| FatI | CATG | 2 cut(s) | 445, 481 |
| FauI | CCCGC | 1 cut(s) | 725 |
| FriOI | GRGCYC | 1 cut(s) | 453 |
| FspBI | CTAG | 2 cut(s) | 126, 227 |
| FspI | TGCGCA | 1 cut(s) | 738 |
| GlaI | GCGC | 2 cut(s) | 671, 738 |
| HaeII | RGCGCY | 1 cut(s) | 673 |
| HaeIII | GGCC | 1 cut(s) | 573 |
| HapII | CCGG | 2 cut(s) | 539, 589 |
| HhaI | GCGC | 2 cut(s) | 672, 739 |
| Hin1II | CATG | 2 cut(s) | 449, 485 |
| Hin6I | GCGC | 2 cut(s) | 670, 737 |
| HinP1I | GCGC | 2 cut(s) | 670, 737 |
| HinfI | GANTC | 7 cut(s) | 102, 115, 209, 361, 411, 432, 542 |
| HpaII | CCGG | 2 cut(s) | 539, 589 |
| HphI | GGTGA | 1 cut(s) | 568 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 289 |
| HpyAV | CCTTC | 2 cut(s) | 159, 382 |
| HpyCH4III | ACNGT | 4 cut(s) | 271, 597, 649, 762 |
| HpyCH4IV | ACGT | 1 cut(s) | 201 |
| HpyCH4V | TGCA | 5 cut(s) | 386, 425, 632, 713, 767 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 726 |
| HpyF3I | CTNAG | 3 cut(s) | 399, 564, 618 |
| HpySE526I | ACGT | 1 cut(s) | 201 |
| Hsp92II | CATG | 2 cut(s) | 449, 485 |
| HspAI | GCGC | 2 cut(s) | 670, 737 |
| Kpn2I | TCCGGA | 1 cut(s) | 538 |
| KspI | CCGCGG | 1 cut(s) | 721 |
| Kzo9I | GATC | 3 cut(s) | 333, 515, 581 |
| LmnI | GCTCC | 4 cut(s) | 34, 458, 622, 784 |
| LweI | GCATC | 1 cut(s) | 331 |
| MaeI | CTAG | 2 cut(s) | 126, 227 |
| MaeII | ACGT | 1 cut(s) | 201 |
| MaeIII | GTNAC | 3 cut(s) | 206, 649, 689 |
| MalI | GATC | 3 cut(s) | 335, 517, 583 |
| MboI | GATC | 3 cut(s) | 333, 515, 581 |
| MboII | GAAGA | 7 cut(s) | 164, 167, 197, 370, 511, 688, 691 |
| MflI | RGATCY | 1 cut(s) | 515 |
| MhlI | GDGCHC | 1 cut(s) | 453 |
| MluCI | AATT | 4 cut(s) | 17, 317, 508, 547 |
| MlyI | GAGTC | 2 cut(s) | 203, 355 |
| MnlI | CCTC | 5 cut(s) | 257, 563, 571, 584, 627 |
| MroI | TCCGGA | 1 cut(s) | 538 |
| MroXI | GAANNNNTTC | 1 cut(s) | 294 |
| MseI | TTAA | 2 cut(s) | 303, 311 |
| MspA1I | CMGCKG | 2 cut(s) | 720, 775 |
| MspI | CCGG | 2 cut(s) | 539, 589 |
| MspR9I | CCNGG | 1 cut(s) | 589 |
| MvnI | CGCG | 1 cut(s) | 720 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 726 |
| NciI | CCSGG | 1 cut(s) | 589 |
| NdeII | GATC | 3 cut(s) | 333, 515, 581 |
| NlaIII | CATG | 2 cut(s) | 449, 485 |
| NlaIV | GGNNCC | 2 cut(s) | 624, 786 |
| NmuCI | GTSAC | 2 cut(s) | 206, 689 |
| NsbI | TGCGCA | 1 cut(s) | 738 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 445 |
| PceI | AGGCCT | 1 cut(s) | 573 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 76 |
| PdmI | GAANNNNTTC | 1 cut(s) | 294 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 411, 432, 542 |
| PleI | GAGTC | 2 cut(s) | 203, 355 |
| PpsI | GAGTC | 2 cut(s) | 203, 355 |
| Psp124BI | GAGCTC | 1 cut(s) | 453 |
| PspN4I | GGNNCC | 2 cut(s) | 624, 786 |
| PsuI | RGATCY | 1 cut(s) | 515 |
| PvuII | CAGCTG | 1 cut(s) | 775 |
| RsaI | GTAC | 1 cut(s) | 599 |
| RsaNI | GTAC | 1 cut(s) | 598 |
| SacI | GAGCTC | 1 cut(s) | 453 |
| SacII | CCGCGG | 1 cut(s) | 721 |
| SaqAI | TTAA | 2 cut(s) | 303, 311 |
| Sau3AI | GATC | 3 cut(s) | 333, 515, 581 |
| SchI | GAGTC | 2 cut(s) | 203, 355 |
| ScrFI | CCNGG | 1 cut(s) | 589 |
| SduI | GDGCHC | 1 cut(s) | 453 |
| SfaNI | GCATC | 1 cut(s) | 331 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| Sfr303I | CCGCGG | 1 cut(s) | 721 |
| SgrBI | CCGCGG | 1 cut(s) | 721 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| Sse9I | AATT | 4 cut(s) | 17, 317, 508, 547 |
| SseBI | AGGCCT | 1 cut(s) | 573 |
| SsiI | CCGC | 4 cut(s) | 250, 642, 718, 720 |
| SspI | AATATT | 1 cut(s) | 192 |
| SspMI | CTAG | 2 cut(s) | 126, 227 |
| SstI | GAGCTC | 1 cut(s) | 453 |
| StuI | AGGCCT | 1 cut(s) | 573 |
| StyD4I | CCNGG | 1 cut(s) | 587 |
| TaaI | ACNGT | 4 cut(s) | 271, 597, 649, 762 |
| TaiI | ACGT | 1 cut(s) | 204 |
| TaqI | TCGA | 5 cut(s) | 120, 183, 409, 414, 512 |
| TasI | AATT | 4 cut(s) | 17, 317, 508, 547 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 411, 432, 542 |
| Tru1I | TTAA | 2 cut(s) | 303, 311 |
| Tru9I | TTAA | 2 cut(s) | 303, 311 |
| TscAI | CASTG | 1 cut(s) | 652 |
| TseFI | GTSAC | 2 cut(s) | 206, 689 |
| Tsp45I | GTSAC | 2 cut(s) | 206, 689 |
| TspDTI | ATGAA | 4 cut(s) | 161, 165, 434, 479 |
| TspGWI | ACGGA | 3 cut(s) | 68, 194, 508 |
| TspRI | CASTG | 1 cut(s) | 652 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 294 |
| XspI | CTAG | 2 cut(s) | 126, 227 |