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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 288, 395 |
| AciI | CCGC | 3 cut(s) | 80, 206, 393 |
| AclWI | GGATC | 2 cut(s) | 288, 309 |
| AcuI | CTGAAG | 1 cut(s) | 185 |
| AcyI | GRCGYC | 1 cut(s) | 463 |
| AjnI | CCWGG | 1 cut(s) | 337 |
| AluBI | AGCT | 2 cut(s) | 53, 174 |
| AluI | AGCT | 2 cut(s) | 53, 174 |
| Alw21I | GWGCWC | 1 cut(s) | 176 |
| Alw26I | GTCTC | 2 cut(s) | 52, 232 |
| AlwI | GGATC | 2 cut(s) | 288, 309 |
| ApeKI | GCWGC | 3 cut(s) | 29, 358, 417 |
| AspLEI | GCGC | 1 cut(s) | 288 |
| AsuHPI | GGTGA | 1 cut(s) | 20 |
| BanII | GRGCYC | 1 cut(s) | 176 |
| Bbv12I | GWGCWC | 1 cut(s) | 176 |
| BbvI | GCAGC | 3 cut(s) | 16, 370, 404 |
| BccI | CCATC | 3 cut(s) | 120, 340, 470 |
| BceAI | ACGGC | 1 cut(s) | 93 |
| BciT130I | CCWGG | 1 cut(s) | 339 |
| BclI | TGATCA | 1 cut(s) | 10 |
| BcoDI | GTCTC | 2 cut(s) | 52, 232 |
| BisI | GCNGC | 3 cut(s) | 30, 359, 418 |
| BlsI | GCNGC | 3 cut(s) | 31, 360, 419 |
| Bme1390I | CCNGG | 1 cut(s) | 339 |
| BmiI | GGNNCC | 1 cut(s) | 336 |
| BmrFI | CCNGG | 1 cut(s) | 339 |
| BmrI | ACTGGG | 1 cut(s) | 301 |
| BmsI | GCATC | 1 cut(s) | 57 |
| BmuI | ACTGGG | 1 cut(s) | 301 |
| BpmI | CTGGAG | 1 cut(s) | 360 |
| BsaHI | GRCGYC | 1 cut(s) | 463 |
| BsaI | GGTCTC | 1 cut(s) | 232 |
| BsaJI | CCNNGG | 1 cut(s) | 177 |
| Bse118I | RCCGGY | 1 cut(s) | 70 |
| Bse1I | ACTGG | 3 cut(s) | 296, 377, 427 |
| BseBI | CCWGG | 1 cut(s) | 339 |
| BseDI | CCNNGG | 1 cut(s) | 177 |
| BseGI | GGATG | 2 cut(s) | 131, 137 |
| BseMII | CTCAG | 3 cut(s) | 45, 227, 444 |
| BseNI | ACTGG | 3 cut(s) | 296, 377, 427 |
| BseXI | GCAGC | 3 cut(s) | 16, 370, 404 |
| BsgI | GTGCAG | 1 cut(s) | 403 |
| Bsh1236I | CGCG | 2 cut(s) | 288, 395 |
| BsiHKAI | GWGCWC | 1 cut(s) | 176 |
| BsiSI | CCGG | 1 cut(s) | 71 |
| BsmAI | GTCTC | 2 cut(s) | 52, 232 |
| BsmBI | CGTCTC | 1 cut(s) | 52 |
| Bso31I | GGTCTC | 1 cut(s) | 232 |
| Bsp1286I | GDGCHC | 1 cut(s) | 176 |
| Bsp143I | GATC | 5 cut(s) | 10, 232, 280, 301, 449 |
| BspACI | CCGC | 3 cut(s) | 80, 206, 393 |
| BspCNI | CTCAG | 3 cut(s) | 46, 228, 445 |
| BspFNI | CGCG | 2 cut(s) | 288, 395 |
| BspHI | TCATGA | 1 cut(s) | 93 |
| BspLI | GGNNCC | 1 cut(s) | 336 |
| BspPI | GGATC | 2 cut(s) | 288, 309 |
| BspTNI | GGTCTC | 1 cut(s) | 232 |
| BsrFI | RCCGGY | 1 cut(s) | 70 |
| BsrI | ACTGG | 3 cut(s) | 296, 377, 427 |
| BssAI | RCCGGY | 1 cut(s) | 70 |
| BssECI | CCNNGG | 1 cut(s) | 177 |
| BssMI | GATC | 5 cut(s) | 10, 232, 280, 301, 449 |
| BssNI | GRCGYC | 1 cut(s) | 463 |
| BssT1I | CCWWGG | 1 cut(s) | 177 |
| Bst2UI | CCWGG | 1 cut(s) | 339 |
| Bst4CI | ACNGT | 1 cut(s) | 326 |
| Bst6I | CTCTTC | 1 cut(s) | 387 |
| BstACI | GRCGYC | 1 cut(s) | 463 |
| BstC8I | GCNNGC | 1 cut(s) | 72 |
| BstDEI | CTNAG | 3 cut(s) | 54, 236, 453 |
| BstF5I | GGATG | 2 cut(s) | 131, 137 |
| BstFNI | CGCG | 2 cut(s) | 288, 395 |
| BstHHI | GCGC | 1 cut(s) | 288 |
| BstKTI | GATC | 5 cut(s) | 13, 235, 283, 304, 452 |
| BstMAI | GTCTC | 2 cut(s) | 52, 232 |
| BstMBI | GATC | 5 cut(s) | 10, 232, 280, 301, 449 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 149, 364, 414, 426 |
| BstNI | CCWGG | 1 cut(s) | 339 |
| BstSCI | CCNGG | 1 cut(s) | 337 |
| BstUI | CGCG | 2 cut(s) | 288, 395 |
| BstV1I | GCAGC | 3 cut(s) | 16, 370, 404 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 184 |
| BtsCI | GGATG | 2 cut(s) | 131, 137 |
| BtsIMutI | CAGTG | 2 cut(s) | 370, 420 |
| Cac8I | GCNNGC | 1 cut(s) | 72 |
| CciI | TCATGA | 1 cut(s) | 93 |
| CfoI | GCGC | 1 cut(s) | 288 |
| Cfr10I | RCCGGY | 1 cut(s) | 70 |
| CseI | GACGC | 1 cut(s) | 452 |
| CviAII | CATG | 2 cut(s) | 94, 243 |
| DdeI | CTNAG | 3 cut(s) | 54, 236, 453 |
| DpnI | GATC | 5 cut(s) | 12, 234, 282, 303, 451 |
| DpnII | GATC | 5 cut(s) | 10, 232, 280, 301, 449 |
| Eam1104I | CTCTTC | 1 cut(s) | 387 |
| EarI | CTCTTC | 1 cut(s) | 387 |
| EciI | GGCGGA | 1 cut(s) | 221 |
| Ecl136II | GAGCTC | 1 cut(s) | 174 |
| Eco130I | CCWWGG | 1 cut(s) | 177 |
| Eco24I | GRGCYC | 1 cut(s) | 176 |
| Eco31I | GGTCTC | 1 cut(s) | 232 |
| Eco53kI | GAGCTC | 1 cut(s) | 174 |
| Eco57I | CTGAAG | 1 cut(s) | 185 |
| EcoICRI | GAGCTC | 1 cut(s) | 174 |
| EcoRII | CCWGG | 1 cut(s) | 337 |
| EcoT14I | CCWWGG | 1 cut(s) | 177 |
| EcoT38I | GRGCYC | 1 cut(s) | 176 |
| ErhI | CCWWGG | 1 cut(s) | 177 |
| Esp3I | CGTCTC | 1 cut(s) | 52 |
| FaeI | CATG | 2 cut(s) | 97, 246 |
| FaiI | YATR | 5 cut(s) | 95, 155, 193, 244, 432 |
| FatI | CATG | 2 cut(s) | 93, 242 |
| FauI | CCCGC | 1 cut(s) | 73 |
| FbaI | TGATCA | 1 cut(s) | 10 |
| Fnu4HI | GCNGC | 3 cut(s) | 30, 359, 418 |
| FokI | GGATG | 2 cut(s) | 138, 144 |
| FriOI | GRGCYC | 1 cut(s) | 176 |
| Fsp4HI | GCNGC | 3 cut(s) | 30, 359, 418 |
| GlaI | GCGC | 1 cut(s) | 287 |
| GluI | GCNGC | 3 cut(s) | 30, 359, 418 |
| GsuI | CTGGAG | 1 cut(s) | 360 |
| HapII | CCGG | 1 cut(s) | 71 |
| HgaI | GACGC | 1 cut(s) | 452 |
| HhaI | GCGC | 1 cut(s) | 288 |
| Hin1I | GRCGYC | 1 cut(s) | 463 |
| Hin1II | CATG | 2 cut(s) | 97, 246 |
| Hin6I | GCGC | 1 cut(s) | 286 |
| HinP1I | GCGC | 1 cut(s) | 286 |
| HpaII | CCGG | 1 cut(s) | 71 |
| HphI | GGTGA | 1 cut(s) | 20 |
| Hpy188I | TCNGA | 6 cut(s) | 165, 237, 315, 322, 441, 454 |
| Hpy188III | TCNNGA | 4 cut(s) | 46, 94, 447, 467 |
| Hpy99I | CGWCG | 3 cut(s) | 79, 326, 468 |
| HpyCH4III | ACNGT | 1 cut(s) | 326 |
| HpyCH4V | TGCA | 1 cut(s) | 420 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 149, 364, 414, 426 |
| HpyF3I | CTNAG | 3 cut(s) | 54, 236, 453 |
| Hsp92I | GRCGYC | 1 cut(s) | 463 |
| Hsp92II | CATG | 2 cut(s) | 97, 246 |
| HspAI | GCGC | 1 cut(s) | 286 |
| KroI | GCCGGC | 1 cut(s) | 70 |
| KroNI | GCCGGC | 1 cut(s) | 72 |
| Ksp22I | TGATCA | 1 cut(s) | 10 |
| Kzo9I | GATC | 5 cut(s) | 10, 232, 280, 301, 449 |
| LmnI | GCTCC | 3 cut(s) | 179, 334, 481 |
| LpnPI | CCDG | 8 cut(s) | 84, 122, 248, 277, 324, 351, 358, 408 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 370, 404 |
| LweI | GCATC | 1 cut(s) | 57 |
| MaeIII | GTNAC | 1 cut(s) | 388 |
| MalI | GATC | 5 cut(s) | 12, 234, 282, 303, 451 |
| MboI | GATC | 5 cut(s) | 10, 232, 280, 301, 449 |
| MboII | GAAGA | 1 cut(s) | 374 |
| MhlI | GDGCHC | 1 cut(s) | 176 |
| MluCI | AATT | 1 cut(s) | 84 |
| MmeI | TCCRAC | 2 cut(s) | 332, 345 |
| MnlI | CCTC | 2 cut(s) | 348, 390 |
| MroNI | GCCGGC | 1 cut(s) | 70 |
| MseI | TTAA | 1 cut(s) | 201 |
| MspI | CCGG | 1 cut(s) | 71 |
| MspR9I | CCNGG | 1 cut(s) | 339 |
| MvaI | CCWGG | 1 cut(s) | 339 |
| MvnI | CGCG | 2 cut(s) | 288, 395 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 149, 364, 414, 426 |
| NaeI | GCCGGC | 1 cut(s) | 72 |
| NdeII | GATC | 5 cut(s) | 10, 232, 280, 301, 449 |
| NgoMIV | GCCGGC | 1 cut(s) | 70 |
| NlaIII | CATG | 2 cut(s) | 97, 246 |
| NlaIV | GGNNCC | 1 cut(s) | 336 |
| PagI | TCATGA | 1 cut(s) | 93 |
| PdiI | GCCGGC | 1 cut(s) | 72 |
| PkrI | GCNGC | 3 cut(s) | 31, 360, 419 |
| Psp124BI | GAGCTC | 1 cut(s) | 176 |
| Psp6I | CCWGG | 1 cut(s) | 337 |
| PspGI | CCWGG | 1 cut(s) | 337 |
| PspN4I | GGNNCC | 1 cut(s) | 336 |
| SacI | GAGCTC | 1 cut(s) | 176 |
| SaqAI | TTAA | 1 cut(s) | 201 |
| SatI | GCNGC | 3 cut(s) | 30, 359, 418 |
| Sau3AI | GATC | 5 cut(s) | 10, 232, 280, 301, 449 |
| ScrFI | CCNGG | 1 cut(s) | 339 |
| SduI | GDGCHC | 1 cut(s) | 176 |
| SetI | ASST | 3 cut(s) | 55, 114, 176 |
| SfaNI | GCATC | 1 cut(s) | 57 |
| Sse9I | AATT | 1 cut(s) | 84 |
| SsiI | CCGC | 3 cut(s) | 80, 206, 393 |
| SstI | GAGCTC | 1 cut(s) | 176 |
| StyD4I | CCNGG | 1 cut(s) | 337 |
| StyI | CCWWGG | 1 cut(s) | 177 |
| TaaI | ACNGT | 1 cut(s) | 326 |
| TaqI | TCGA | 1 cut(s) | 170 |
| TasI | AATT | 1 cut(s) | 84 |
| Tru1I | TTAA | 1 cut(s) | 201 |
| Tru9I | TTAA | 1 cut(s) | 201 |
| TscAI | CASTG | 2 cut(s) | 377, 427 |
| TseI | GCWGC | 3 cut(s) | 29, 358, 417 |
| TspGWI | ACGGA | 1 cut(s) | 107 |
| TspRI | CASTG | 2 cut(s) | 377, 427 |