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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 177 |
| AccB1I | GGYRCC | 1 cut(s) | 353 |
| AcuI | CTGAAG | 1 cut(s) | 204 |
| AcyI | GRCGYC | 1 cut(s) | 354 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 46, 464 |
| AgsI | TTSAA | 2 cut(s) | 160, 294 |
| AluBI | AGCT | 3 cut(s) | 188, 346, 368 |
| AluI | AGCT | 3 cut(s) | 188, 346, 368 |
| Alw21I | GWGCWC | 1 cut(s) | 348 |
| Alw26I | GTCTC | 2 cut(s) | 14, 280 |
| ApeKI | GCWGC | 1 cut(s) | 320 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 71, 103 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 1 cut(s) | 356 |
| BaeGI | GKGCMC | 1 cut(s) | 457 |
| BanI | GGYRCC | 1 cut(s) | 353 |
| BanII | GRGCYC | 1 cut(s) | 348 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| Bbv12I | GWGCWC | 1 cut(s) | 348 |
| BbvI | GCAGC | 1 cut(s) | 332 |
| BccI | CCATC | 2 cut(s) | 126, 202 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 125, 159 |
| BcoDI | GTCTC | 2 cut(s) | 14, 280 |
| BfaI | CTAG | 2 cut(s) | 408, 472 |
| BfmI | CTRYAG | 1 cut(s) | 445 |
| BfoI | RGCGCY | 1 cut(s) | 357 |
| BisI | GCNGC | 1 cut(s) | 321 |
| BlsI | GCNGC | 1 cut(s) | 322 |
| BmiI | GGNNCC | 2 cut(s) | 355, 421 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BsaAI | YACGTR | 1 cut(s) | 326 |
| BsaBI | GATNNNNATC | 1 cut(s) | 245 |
| BsaHI | GRCGYC | 1 cut(s) | 354 |
| BsaJI | CCNNGG | 1 cut(s) | 459 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 46, 464 |
| Bse1I | ACTGG | 1 cut(s) | 413 |
| Bse3DI | GCAATG | 1 cut(s) | 100 |
| Bse8I | GATNNNNATC | 1 cut(s) | 245 |
| BseDI | CCNNGG | 1 cut(s) | 459 |
| BseJI | GATNNNNATC | 1 cut(s) | 245 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 46, 464 |
| BseMI | GCAATG | 1 cut(s) | 100 |
| BseMII | CTCAG | 1 cut(s) | 360 |
| BseNI | ACTGG | 1 cut(s) | 413 |
| BseSI | GKGCMC | 1 cut(s) | 457 |
| BseXI | GCAGC | 1 cut(s) | 332 |
| BshNI | GGYRCC | 1 cut(s) | 353 |
| BsiHKAI | GWGCWC | 1 cut(s) | 348 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 46, 464 |
| BsmAI | GTCTC | 2 cut(s) | 14, 280 |
| BsmBI | CGTCTC | 2 cut(s) | 14, 280 |
| BsmI | GAATGC | 1 cut(s) | 322 |
| Bsp1286I | GDGCHC | 2 cut(s) | 348, 457 |
| Bsp143I | GATC | 1 cut(s) | 246 |
| BspCNI | CTCAG | 1 cut(s) | 361 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 2 cut(s) | 355, 421 |
| BspT107I | GGYRCC | 1 cut(s) | 353 |
| BsrDI | GCAATG | 1 cut(s) | 100 |
| BsrI | ACTGG | 1 cut(s) | 413 |
| BssECI | CCNNGG | 1 cut(s) | 459 |
| BssMI | GATC | 1 cut(s) | 246 |
| BssNI | GRCGYC | 1 cut(s) | 354 |
| BssT1I | CCWWGG | 1 cut(s) | 459 |
| BstACI | GRCGYC | 1 cut(s) | 354 |
| BstBAI | YACGTR | 1 cut(s) | 326 |
| BstDEI | CTNAG | 1 cut(s) | 369 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 44 |
| BstH2I | RGCGCY | 1 cut(s) | 357 |
| BstHHI | GCGC | 1 cut(s) | 356 |
| BstKTI | GATC | 1 cut(s) | 249 |
| BstMAI | GTCTC | 2 cut(s) | 14, 280 |
| BstMBI | GATC | 1 cut(s) | 246 |
| BstSFI | CTRYAG | 1 cut(s) | 445 |
| BstSLI | GKGCMC | 1 cut(s) | 457 |
| BstV1I | GCAGC | 1 cut(s) | 332 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 89 |
| BtsIMutI | CAGTG | 1 cut(s) | 420 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 1 cut(s) | 356 |
| CviAII | CATG | 3 cut(s) | 13, 341, 358 |
| CviJI | RGCY | 4 cut(s) | 141, 188, 346, 368 |
| CviKI_1 | RGCY | 4 cut(s) | 141, 188, 346, 368 |
| DdeI | CTNAG | 1 cut(s) | 369 |
| DinI | GGCGCC | 1 cut(s) | 355 |
| DpnI | GATC | 1 cut(s) | 248 |
| DpnII | GATC | 1 cut(s) | 246 |
| Ecl136II | GAGCTC | 1 cut(s) | 346 |
| Eco130I | CCWWGG | 1 cut(s) | 459 |
| Eco24I | GRGCYC | 1 cut(s) | 348 |
| Eco53kI | GAGCTC | 1 cut(s) | 346 |
| Eco57I | CTGAAG | 1 cut(s) | 204 |
| EcoICRI | GAGCTC | 1 cut(s) | 346 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 44 |
| EcoT14I | CCWWGG | 1 cut(s) | 459 |
| EcoT38I | GRGCYC | 1 cut(s) | 348 |
| EgeI | GGCGCC | 1 cut(s) | 355 |
| EheI | GGCGCC | 1 cut(s) | 355 |
| ErhI | CCWWGG | 1 cut(s) | 459 |
| Esp3I | CGTCTC | 2 cut(s) | 14, 280 |
| FaeI | CATG | 3 cut(s) | 16, 344, 361 |
| FatI | CATG | 3 cut(s) | 12, 340, 357 |
| Fnu4HI | GCNGC | 1 cut(s) | 321 |
| FriOI | GRGCYC | 1 cut(s) | 348 |
| Fsp4HI | GCNGC | 1 cut(s) | 321 |
| FspBI | CTAG | 2 cut(s) | 408, 472 |
| GlaI | GCGC | 1 cut(s) | 355 |
| GluI | GCNGC | 1 cut(s) | 321 |
| HaeII | RGCGCY | 1 cut(s) | 357 |
| HhaI | GCGC | 1 cut(s) | 356 |
| Hin1I | GRCGYC | 1 cut(s) | 354 |
| Hin1II | CATG | 3 cut(s) | 16, 344, 361 |
| Hin6I | GCGC | 1 cut(s) | 354 |
| HinP1I | GCGC | 1 cut(s) | 354 |
| HindIII | AAGCTT | 1 cut(s) | 186 |
| HinfI | GANTC | 2 cut(s) | 104, 256 |
| Hpy188I | TCNGA | 3 cut(s) | 184, 306, 435 |
| Hpy188III | TCNNGA | 4 cut(s) | 101, 116, 250, 341 |
| HpyAV | CCTTC | 1 cut(s) | 152 |
| HpyCH4IV | ACGT | 3 cut(s) | 23, 325, 363 |
| HpyCH4V | TGCA | 1 cut(s) | 320 |
| HpyF3I | CTNAG | 1 cut(s) | 369 |
| HpySE526I | ACGT | 3 cut(s) | 23, 325, 363 |
| Hsp92I | GRCGYC | 1 cut(s) | 354 |
| Hsp92II | CATG | 3 cut(s) | 16, 344, 361 |
| HspAI | GCGC | 1 cut(s) | 354 |
| KasI | GGCGCC | 1 cut(s) | 353 |
| Kzo9I | GATC | 1 cut(s) | 246 |
| LpnPI | CCDG | 6 cut(s) | 70, 95, 122, 129, 296, 426 |
| Lsp1109I | GCAGC | 1 cut(s) | 332 |
| MaeI | CTAG | 2 cut(s) | 408, 472 |
| MaeII | ACGT | 3 cut(s) | 23, 325, 363 |
| MalI | GATC | 1 cut(s) | 248 |
| MboI | GATC | 1 cut(s) | 246 |
| MboII | GAAGA | 3 cut(s) | 62, 265, 406 |
| MhlI | GDGCHC | 2 cut(s) | 348, 457 |
| MluCI | AATT | 1 cut(s) | 298 |
| Mly113I | GGCGCC | 1 cut(s) | 354 |
| MlyI | GAGTC | 1 cut(s) | 250 |
| MnlI | CCTC | 3 cut(s) | 40, 50, 458 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MslI | CAYNNNNRTG | 1 cut(s) | 15 |
| Mva1269I | GAATGC | 1 cut(s) | 322 |
| NarI | GGCGCC | 1 cut(s) | 354 |
| NdeII | GATC | 1 cut(s) | 246 |
| NlaIII | CATG | 3 cut(s) | 16, 344, 361 |
| NlaIV | GGNNCC | 2 cut(s) | 355, 421 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PctI | GAATGC | 1 cut(s) | 322 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PkrI | GCNGC | 1 cut(s) | 322 |
| PleI | GAGTC | 1 cut(s) | 250 |
| PluTI | GGCGCC | 1 cut(s) | 357 |
| PpsI | GAGTC | 1 cut(s) | 250 |
| Ppu21I | YACGTR | 1 cut(s) | 326 |
| PsiI | TTATAA | 1 cut(s) | 177 |
| Psp124BI | GAGCTC | 1 cut(s) | 348 |
| PspN4I | GGNNCC | 2 cut(s) | 355, 421 |
| RseI | CAYNNNNRTG | 1 cut(s) | 15 |
| SacI | GAGCTC | 1 cut(s) | 348 |
| SatI | GCNGC | 1 cut(s) | 321 |
| Sau3AI | GATC | 1 cut(s) | 246 |
| SchI | GAGTC | 1 cut(s) | 250 |
| SduI | GDGCHC | 2 cut(s) | 348, 457 |
| SetI | ASST | 8 cut(s) | 26, 42, 190, 328, 338, 348, 366, 370 |
| SfcI | CTRYAG | 1 cut(s) | 445 |
| SfoI | GGCGCC | 1 cut(s) | 355 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 15 |
| Sse9I | AATT | 1 cut(s) | 298 |
| SspDI | GGCGCC | 1 cut(s) | 353 |
| SspMI | CTAG | 2 cut(s) | 408, 472 |
| SstI | GAGCTC | 1 cut(s) | 348 |
| StyI | CCWWGG | 1 cut(s) | 459 |
| TaiI | ACGT | 3 cut(s) | 26, 328, 366 |
| TaqI | TCGA | 1 cut(s) | 249 |
| TasI | AATT | 1 cut(s) | 298 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| TscAI | CASTG | 1 cut(s) | 420 |
| TseI | GCWGC | 1 cut(s) | 320 |
| TspDTI | ATGAA | 4 cut(s) | 29, 182, 329, 374 |
| TspRI | CASTG | 1 cut(s) | 420 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 44 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 408, 472 |