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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 651 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 717 |
| AccII | CGCG | 1 cut(s) | 657 |
| AccIII | TCCGGA | 1 cut(s) | 637 |
| AciI | CCGC | 1 cut(s) | 79 |
| AclI | AACGTT | 1 cut(s) | 300 |
| AclWI | GGATC | 1 cut(s) | 539 |
| AcsI | RAATTY | 2 cut(s) | 102, 641 |
| AflII | CTTAAG | 1 cut(s) | 662 |
| AgsI | TTSAA | 3 cut(s) | 251, 364, 646 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 276, 308 |
| AleI | CACNNNNGTG | 1 cut(s) | 440 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 550, 560 |
| AluI | AGCT | 4 cut(s) | 155, 161, 550, 560 |
| Alw21I | GWGCWC | 1 cut(s) | 552 |
| Alw26I | GTCTC | 3 cut(s) | 280, 350, 484 |
| AlwI | GGATC | 1 cut(s) | 539 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 637 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 2 cut(s) | 102, 641 |
| AseI | ATTAAT | 1 cut(s) | 564 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 393, 461 |
| AspLEI | GCGC | 1 cut(s) | 659 |
| AspS9I | GGNCC | 1 cut(s) | 719 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 719 |
| BanII | GRGCYC | 1 cut(s) | 552 |
| BbsI | GAAGAC | 2 cut(s) | 261, 464 |
| Bbv12I | GWGCWC | 1 cut(s) | 552 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 5 cut(s) | 40, 92, 203, 330, 484 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 503, 537 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 2 cut(s) | 103, 694 |
| BcoDI | GTCTC | 3 cut(s) | 280, 350, 484 |
| BfaI | CTAG | 3 cut(s) | 126, 326, 708 |
| BfrI | CTTAAG | 1 cut(s) | 662 |
| BfuI | GTATCC | 2 cut(s) | 103, 694 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 719 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgT120I | GGNCC | 1 cut(s) | 719 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BpiI | GAAGAC | 2 cut(s) | 261, 464 |
| BpmI | CTGGAG | 2 cut(s) | 215, 332 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 513 |
| BsaI | GGTCTC | 1 cut(s) | 280 |
| BsaWI | WCCGGW | 1 cut(s) | 637 |
| Bse1I | ACTGG | 4 cut(s) | 49, 65, 232, 349 |
| BseAI | TCCGGA | 1 cut(s) | 637 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 513 |
| BseGI | GGATG | 4 cut(s) | 139, 198, 226, 588 |
| BseNI | ACTGG | 4 cut(s) | 49, 65, 232, 349 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 1 cut(s) | 657 |
| BshVI | ATCGAT | 1 cut(s) | 513 |
| BsiHKAI | GWGCWC | 1 cut(s) | 552 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 638 |
| BsmAI | GTCTC | 3 cut(s) | 280, 350, 484 |
| BsmBI | CGTCTC | 1 cut(s) | 484 |
| Bso31I | GGTCTC | 1 cut(s) | 280 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 552 |
| Bsp13I | TCCGGA | 1 cut(s) | 637 |
| Bsp143I | GATC | 2 cut(s) | 432, 531 |
| BspACI | CCGC | 1 cut(s) | 79 |
| BspDI | ATCGAT | 1 cut(s) | 513 |
| BspEI | TCCGGA | 1 cut(s) | 637 |
| BspFNI | CGCG | 1 cut(s) | 657 |
| BspHI | TCATGA | 1 cut(s) | 544 |
| BspPI | GGATC | 1 cut(s) | 539 |
| BspTI | CTTAAG | 1 cut(s) | 662 |
| BspTNI | GGTCTC | 1 cut(s) | 280 |
| BsrI | ACTGG | 4 cut(s) | 49, 65, 232, 349 |
| BssMI | GATC | 2 cut(s) | 432, 531 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstAFI | CTTAAG | 1 cut(s) | 662 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 2 cut(s) | 184, 738 |
| BstF5I | GGATG | 4 cut(s) | 139, 198, 226, 588 |
| BstFNI | CGCG | 1 cut(s) | 657 |
| BstHHI | GCGC | 1 cut(s) | 659 |
| BstKTI | GATC | 2 cut(s) | 435, 534 |
| BstMAI | GTCTC | 3 cut(s) | 280, 350, 484 |
| BstMBI | GATC | 2 cut(s) | 432, 531 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 188 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstUI | CGCG | 1 cut(s) | 657 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 261, 464 |
| Bsu15I | ATCGAT | 1 cut(s) | 513 |
| BsuI | GTATCC | 2 cut(s) | 103, 694 |
| BsuTUI | ATCGAT | 1 cut(s) | 513 |
| BtsCI | GGATG | 4 cut(s) | 139, 198, 226, 588 |
| BtsIMutI | CAGTG | 1 cut(s) | 58 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 544 |
| CfoI | GCGC | 1 cut(s) | 659 |
| Cfr13I | GGNCC | 1 cut(s) | 719 |
| ClaI | ATCGAT | 1 cut(s) | 513 |
| CviAII | CATG | 2 cut(s) | 545, 581 |
| DdeI | CTNAG | 2 cut(s) | 184, 738 |
| DpnI | GATC | 2 cut(s) | 434, 533 |
| DpnII | GATC | 2 cut(s) | 432, 531 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 717 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 717 |
| Ecl136II | GAGCTC | 1 cut(s) | 550 |
| Eco24I | GRGCYC | 1 cut(s) | 552 |
| Eco31I | GGTCTC | 1 cut(s) | 280 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 719 |
| Eco53kI | GAGCTC | 1 cut(s) | 550 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 550 |
| EcoRI | GAATTC | 2 cut(s) | 102, 641 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 1 cut(s) | 552 |
| Esp3I | CGTCTC | 1 cut(s) | 484 |
| FaeI | CATG | 2 cut(s) | 548, 584 |
| FatI | CATG | 2 cut(s) | 544, 580 |
| FauNDI | CATATG | 1 cut(s) | 216 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 4 cut(s) | 146, 185, 233, 575 |
| FriOI | GRGCYC | 1 cut(s) | 552 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 3 cut(s) | 126, 326, 708 |
| GlaI | GCGC | 1 cut(s) | 658 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 2 cut(s) | 215, 332 |
| HapII | CCGG | 1 cut(s) | 638 |
| HhaI | GCGC | 1 cut(s) | 659 |
| Hin1II | CATG | 2 cut(s) | 548, 584 |
| Hin6I | GCGC | 1 cut(s) | 657 |
| HinP1I | GCGC | 1 cut(s) | 657 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 5 cut(s) | 115, 208, 224, 308, 615 |
| HpaII | CCGG | 1 cut(s) | 638 |
| Hpy188I | TCNGA | 1 cut(s) | 388 |
| HpyAV | CCTTC | 3 cut(s) | 258, 404, 481 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 300, 712 |
| HpyCH4V | TGCA | 2 cut(s) | 485, 524 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 188 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 738 |
| HpySE526I | ACGT | 2 cut(s) | 300, 712 |
| Hsp92II | CATG | 2 cut(s) | 548, 584 |
| HspAI | GCGC | 1 cut(s) | 657 |
| Kpn2I | TCCGGA | 1 cut(s) | 637 |
| Kzo9I | GATC | 2 cut(s) | 432, 531 |
| LmnI | GCTCC | 4 cut(s) | 34, 38, 234, 557 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| MaeI | CTAG | 3 cut(s) | 126, 326, 708 |
| MaeII | ACGT | 2 cut(s) | 300, 712 |
| MaeIII | GTNAC | 2 cut(s) | 5, 305 |
| MalI | GATC | 2 cut(s) | 434, 533 |
| MboI | GATC | 2 cut(s) | 432, 531 |
| MboII | GAAGA | 6 cut(s) | 179, 263, 266, 296, 469, 610 |
| MhlI | GDGCHC | 1 cut(s) | 552 |
| MluCI | AATT | 7 cut(s) | 17, 102, 369, 416, 607, 641, 646 |
| MlyI | GAGTC | 2 cut(s) | 202, 302 |
| MnlI | CCTC | 2 cut(s) | 181, 662 |
| MroI | TCCGGA | 1 cut(s) | 637 |
| MroXI | GAANNNNTTC | 2 cut(s) | 393, 461 |
| MseI | TTAA | 5 cut(s) | 402, 410, 498, 564, 663 |
| MslI | CAYNNNNRTG | 4 cut(s) | 203, 219, 440, 593 |
| MspCI | CTTAAG | 1 cut(s) | 662 |
| MspI | CCGG | 1 cut(s) | 638 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MvnI | CGCG | 1 cut(s) | 657 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 188 |
| NdeI | CATATG | 1 cut(s) | 216 |
| NdeII | GATC | 2 cut(s) | 432, 531 |
| NlaIII | CATG | 2 cut(s) | 548, 584 |
| NmuCI | GTSAC | 1 cut(s) | 305 |
| OliI | CACNNNNGTG | 1 cut(s) | 440 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 544 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 679 |
| PdmI | GAANNNNTTC | 2 cut(s) | 393, 461 |
| PfeI | GAWTC | 3 cut(s) | 115, 224, 615 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 202, 302 |
| PpsI | GAGTC | 2 cut(s) | 202, 302 |
| PshBI | ATTAAT | 1 cut(s) | 564 |
| PsiI | TTATAA | 1 cut(s) | 651 |
| Psp124BI | GAGCTC | 1 cut(s) | 552 |
| Psp1406I | AACGTT | 1 cut(s) | 300 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspPI | GGNCC | 1 cut(s) | 719 |
| RseI | CAYNNNNRTG | 4 cut(s) | 203, 219, 440, 593 |
| SacI | GAGCTC | 1 cut(s) | 552 |
| SaqAI | TTAA | 5 cut(s) | 402, 410, 498, 564, 663 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 2 cut(s) | 432, 531 |
| Sau96I | GGNCC | 1 cut(s) | 719 |
| SchI | GAGTC | 2 cut(s) | 202, 302 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 552 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 719 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 203, 219, 440, 593 |
| SmlI | CTYRAG | 4 cut(s) | 89, 119, 156, 662 |
| SmoI | CTYRAG | 4 cut(s) | 89, 119, 156, 662 |
| Sse9I | AATT | 7 cut(s) | 17, 102, 369, 416, 607, 641, 646 |
| SsiI | CCGC | 1 cut(s) | 79 |
| SspMI | CTAG | 3 cut(s) | 126, 326, 708 |
| SstI | GAGCTC | 1 cut(s) | 552 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 303, 715 |
| TaqI | TCGA | 4 cut(s) | 96, 120, 282, 513 |
| TasI | AATT | 7 cut(s) | 17, 102, 369, 416, 607, 641, 646 |
| TfiI | GAWTC | 3 cut(s) | 115, 224, 615 |
| Tru1I | TTAA | 5 cut(s) | 402, 410, 498, 564, 663 |
| Tru9I | TTAA | 5 cut(s) | 402, 410, 498, 564, 663 |
| TscAI | CASTG | 1 cut(s) | 65 |
| TseFI | GTSAC | 1 cut(s) | 305 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 305 |
| TspDTI | ATGAA | 2 cut(s) | 428, 533 |
| TspGWI | ACGGA | 1 cut(s) | 544 |
| TspRI | CASTG | 1 cut(s) | 65 |
| Vha464I | CTTAAG | 1 cut(s) | 662 |
| VpaK11BI | GGWCC | 1 cut(s) | 719 |
| VspI | ATTAAT | 1 cut(s) | 564 |
| XapI | RAATTY | 2 cut(s) | 102, 641 |
| XbaI | TCTAGA | 1 cut(s) | 707 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 2 cut(s) | 393, 461 |
| XspI | CTAG | 3 cut(s) | 126, 326, 708 |