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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 411 |
| AciI | CCGC | 2 cut(s) | 106, 505 |
| AclWI | GGATC | 1 cut(s) | 293 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 238 |
| AgsI | TTSAA | 1 cut(s) | 121 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 2 cut(s) | 304, 314 |
| AluI | AGCT | 2 cut(s) | 304, 314 |
| Alw26I | GTCTC | 2 cut(s) | 37, 241 |
| AlwI | GGATC | 1 cut(s) | 293 |
| ApeKI | GCWGC | 1 cut(s) | 275 |
| AseI | ATTAAT | 2 cut(s) | 159, 245 |
| AspLEI | GCGC | 1 cut(s) | 413 |
| AspS9I | GGNCC | 1 cut(s) | 473 |
| AvaII | GGWCC | 1 cut(s) | 473 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| BbvI | GCAGC | 1 cut(s) | 262 |
| BccI | CCATC | 1 cut(s) | 87 |
| BcoDI | GTCTC | 2 cut(s) | 37, 241 |
| BfaI | CTAG | 1 cut(s) | 83 |
| BfmI | CTRYAG | 1 cut(s) | 276 |
| BisI | GCNGC | 1 cut(s) | 276 |
| BlsI | GCNGC | 1 cut(s) | 277 |
| Bme18I | GGWCC | 1 cut(s) | 473 |
| BmgT120I | GGNCC | 1 cut(s) | 473 |
| BmiI | GGNNCC | 1 cut(s) | 428 |
| BmsI | GCATC | 2 cut(s) | 187, 262 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 1 cut(s) | 372 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 238 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseDI | CCNNGG | 1 cut(s) | 372 |
| BseGI | GGATG | 3 cut(s) | 342, 368, 470 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 238 |
| BseMII | CTCAG | 1 cut(s) | 431 |
| BseXI | GCAGC | 1 cut(s) | 262 |
| Bsh1236I | CGCG | 1 cut(s) | 411 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 238 |
| BsmAI | GTCTC | 2 cut(s) | 37, 241 |
| BsmBI | CGTCTC | 1 cut(s) | 241 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp143I | GATC | 2 cut(s) | 189, 285 |
| Bsp19I | CCATGG | 1 cut(s) | 372 |
| BspACI | CCGC | 2 cut(s) | 106, 505 |
| BspCNI | CTCAG | 1 cut(s) | 430 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspFNI | CGCG | 1 cut(s) | 411 |
| BspHI | TCATGA | 1 cut(s) | 298 |
| BspLI | GGNNCC | 1 cut(s) | 428 |
| BspMAI | CTGCAG | 1 cut(s) | 280 |
| BspPI | GGATC | 1 cut(s) | 293 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BssECI | CCNNGG | 1 cut(s) | 372 |
| BssMI | GATC | 2 cut(s) | 189, 285 |
| BssT1I | CCWWGG | 1 cut(s) | 372 |
| BstDEI | CTNAG | 3 cut(s) | 255, 417, 449 |
| BstDSI | CCRYGG | 1 cut(s) | 372 |
| BstEII | GGTNACC | 1 cut(s) | 500 |
| BstF5I | GGATG | 3 cut(s) | 342, 368, 470 |
| BstFNI | CGCG | 1 cut(s) | 411 |
| BstHHI | GCGC | 1 cut(s) | 413 |
| BstKTI | GATC | 2 cut(s) | 192, 288 |
| BstMAI | GTCTC | 2 cut(s) | 37, 241 |
| BstMBI | GATC | 2 cut(s) | 189, 285 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 433 |
| BstPI | GGTNACC | 1 cut(s) | 500 |
| BstSFI | CTRYAG | 1 cut(s) | 276 |
| BstUI | CGCG | 1 cut(s) | 411 |
| BstV1I | GCAGC | 1 cut(s) | 262 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgI | CCRYGG | 1 cut(s) | 372 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 3 cut(s) | 342, 368, 470 |
| BtsIMutI | CAGTG | 2 cut(s) | 192, 324 |
| CciI | TCATGA | 1 cut(s) | 298 |
| CfoI | GCGC | 1 cut(s) | 413 |
| Cfr13I | GGNCC | 1 cut(s) | 473 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CviAII | CATG | 4 cut(s) | 291, 299, 335, 373 |
| CviJI | RGCY | 4 cut(s) | 102, 304, 314, 427 |
| CviKI_1 | RGCY | 4 cut(s) | 102, 304, 314, 427 |
| DdeI | CTNAG | 3 cut(s) | 255, 417, 449 |
| DpnI | GATC | 2 cut(s) | 191, 287 |
| DpnII | GATC | 2 cut(s) | 189, 285 |
| Eco130I | CCWWGG | 1 cut(s) | 372 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco47I | GGWCC | 1 cut(s) | 473 |
| Eco91I | GGTNACC | 1 cut(s) | 500 |
| EcoO65I | GGTNACC | 1 cut(s) | 500 |
| EcoT14I | CCWWGG | 1 cut(s) | 372 |
| ErhI | CCWWGG | 1 cut(s) | 372 |
| Esp3I | CGTCTC | 1 cut(s) | 241 |
| FaeI | CATG | 4 cut(s) | 294, 302, 338, 376 |
| FatI | CATG | 4 cut(s) | 290, 298, 334, 372 |
| Fnu4HI | GCNGC | 1 cut(s) | 276 |
| FokI | GGATG | 3 cut(s) | 329, 355, 477 |
| Fsp4HI | GCNGC | 1 cut(s) | 276 |
| FspBI | CTAG | 1 cut(s) | 83 |
| GlaI | GCGC | 1 cut(s) | 412 |
| GluI | GCNGC | 1 cut(s) | 276 |
| HhaI | GCGC | 1 cut(s) | 413 |
| Hin1II | CATG | 4 cut(s) | 294, 302, 338, 376 |
| Hin6I | GCGC | 1 cut(s) | 411 |
| HinP1I | GCGC | 1 cut(s) | 411 |
| HinfI | GANTC | 5 cut(s) | 65, 73, 217, 267, 395 |
| Hpy188I | TCNGA | 3 cut(s) | 145, 394, 420 |
| Hpy188III | TCNNGA | 4 cut(s) | 77, 131, 299, 462 |
| HpyAV | CCTTC | 4 cut(s) | 15, 238, 417, 491 |
| HpyCH4IV | ACGT | 1 cut(s) | 57 |
| HpyCH4V | TGCA | 2 cut(s) | 156, 278 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 433 |
| HpyF3I | CTNAG | 3 cut(s) | 255, 417, 449 |
| HpySE526I | ACGT | 1 cut(s) | 57 |
| Hsp92II | CATG | 4 cut(s) | 294, 302, 338, 376 |
| HspAI | GCGC | 1 cut(s) | 411 |
| Kzo9I | GATC | 2 cut(s) | 189, 285 |
| LmnI | GCTCC | 2 cut(s) | 311, 432 |
| LpnPI | CCDG | 5 cut(s) | 31, 83, 264, 447, 456 |
| Lsp1109I | GCAGC | 1 cut(s) | 262 |
| LweI | GCATC | 2 cut(s) | 187, 262 |
| MaeI | CTAG | 1 cut(s) | 83 |
| MaeII | ACGT | 1 cut(s) | 57 |
| MaeIII | GTNAC | 3 cut(s) | 62, 322, 500 |
| MalI | GATC | 2 cut(s) | 191, 287 |
| MboI | GATC | 2 cut(s) | 189, 285 |
| MboII | GAAGA | 5 cut(s) | 20, 23, 53, 226, 364 |
| MluCI | AATT | 4 cut(s) | 160, 173, 361, 400 |
| MlyI | GAGTC | 2 cut(s) | 59, 211 |
| MnlI | CCTC | 2 cut(s) | 113, 426 |
| MseI | TTAA | 3 cut(s) | 159, 167, 245 |
| MslI | CAYNNNNRTG | 1 cut(s) | 347 |
| MvnI | CGCG | 1 cut(s) | 411 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 433 |
| NcoI | CCATGG | 1 cut(s) | 372 |
| NdeII | GATC | 2 cut(s) | 189, 285 |
| NlaIII | CATG | 4 cut(s) | 294, 302, 338, 376 |
| NlaIV | GGNNCC | 1 cut(s) | 428 |
| NmeAIII | GCCGAG | 1 cut(s) | 218 |
| NmuCI | GTSAC | 2 cut(s) | 62, 322 |
| PagI | TCATGA | 1 cut(s) | 298 |
| PfeI | GAWTC | 3 cut(s) | 73, 267, 395 |
| PkrI | GCNGC | 1 cut(s) | 277 |
| PleI | GAGTC | 2 cut(s) | 59, 211 |
| PpsI | GAGTC | 2 cut(s) | 59, 211 |
| PshBI | ATTAAT | 2 cut(s) | 159, 245 |
| PspEI | GGTNACC | 1 cut(s) | 500 |
| PspN4I | GGNNCC | 1 cut(s) | 428 |
| PspPI | GGNCC | 1 cut(s) | 473 |
| PstI | CTGCAG | 1 cut(s) | 280 |
| RseI | CAYNNNNRTG | 1 cut(s) | 347 |
| SaqAI | TTAA | 3 cut(s) | 159, 167, 245 |
| SatI | GCNGC | 1 cut(s) | 276 |
| Sau3AI | GATC | 2 cut(s) | 189, 285 |
| Sau96I | GGNCC | 1 cut(s) | 473 |
| SchI | GAGTC | 2 cut(s) | 59, 211 |
| SetI | ASST | 7 cut(s) | 26, 60, 84, 230, 306, 316, 502 |
| SfaNI | GCATC | 2 cut(s) | 187, 262 |
| SfcI | CTRYAG | 1 cut(s) | 276 |
| SinI | GGWCC | 1 cut(s) | 473 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 347 |
| Sse9I | AATT | 4 cut(s) | 160, 173, 361, 400 |
| SsiI | CCGC | 2 cut(s) | 106, 505 |
| SspI | AATATT | 1 cut(s) | 48 |
| SspMI | CTAG | 1 cut(s) | 83 |
| StyI | CCWWGG | 1 cut(s) | 372 |
| TaiI | ACGT | 1 cut(s) | 60 |
| TaqI | TCGA | 4 cut(s) | 39, 265, 270, 365 |
| TasI | AATT | 4 cut(s) | 160, 173, 361, 400 |
| TfiI | GAWTC | 3 cut(s) | 73, 267, 395 |
| Tru1I | TTAA | 3 cut(s) | 159, 167, 245 |
| Tru9I | TTAA | 3 cut(s) | 159, 167, 245 |
| TscAI | CASTG | 2 cut(s) | 199, 331 |
| TseFI | GTSAC | 2 cut(s) | 62, 322 |
| TseI | GCWGC | 1 cut(s) | 275 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 322 |
| TspDTI | ATGAA | 4 cut(s) | 17, 21, 287, 332 |
| TspGWI | ACGGA | 2 cut(s) | 50, 298 |
| TspRI | CASTG | 2 cut(s) | 199, 331 |
| VpaK11BI | GGWCC | 1 cut(s) | 473 |
| VspI | ATTAAT | 2 cut(s) | 159, 245 |
| XspI | CTAG | 1 cut(s) | 83 |