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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 240 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 306 |
| AccB1I | GGYRCC | 2 cut(s) | 261, 419 |
| AccII | CGCG | 1 cut(s) | 246 |
| AccIII | TCCGGA | 1 cut(s) | 226 |
| AciI | CCGC | 2 cut(s) | 340, 561 |
| AclWI | GGATC | 2 cut(s) | 128, 198 |
| AcoI | YGGCCR | 1 cut(s) | 406 |
| AcsI | RAATTY | 1 cut(s) | 5 |
| AcyI | GRCGYC | 1 cut(s) | 262 |
| AgsI | TTSAA | 1 cut(s) | 457 |
| AluBI | AGCT | 4 cut(s) | 139, 149, 542, 593 |
| AluI | AGCT | 4 cut(s) | 139, 149, 542, 593 |
| Alw26I | GTCTC | 1 cut(s) | 73 |
| AlwI | GGATC | 2 cut(s) | 128, 198 |
| Aor13HI | TCCGGA | 1 cut(s) | 226 |
| AoxI | GGCC | 1 cut(s) | 406 |
| ApoI | RAATTY | 1 cut(s) | 5 |
| AspLEI | GCGC | 3 cut(s) | 248, 264, 463 |
| AspS9I | GGNCC | 1 cut(s) | 308 |
| AsuHPI | GGTGA | 1 cut(s) | 550 |
| AvaII | GGWCC | 1 cut(s) | 308 |
| BaeGI | GKGCMC | 1 cut(s) | 529 |
| BalI | TGGCCA | 1 cut(s) | 408 |
| BanI | GGYRCC | 2 cut(s) | 261, 419 |
| BccI | CCATC | 2 cut(s) | 73, 447 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 92, 126 |
| BciVI | GTATCC | 1 cut(s) | 283 |
| BclI | TGATCA | 1 cut(s) | 517 |
| BcoDI | GTCTC | 1 cut(s) | 73 |
| BfaI | CTAG | 2 cut(s) | 543, 629 |
| BfoI | RGCGCY | 2 cut(s) | 265, 464 |
| BfuI | GTATCC | 1 cut(s) | 283 |
| Bme18I | GGWCC | 1 cut(s) | 308 |
| BmgT120I | GGNCC | 1 cut(s) | 308 |
| BmiI | GGNNCC | 3 cut(s) | 263, 362, 421 |
| BmsI | GCATC | 2 cut(s) | 19, 383 |
| Bsa29I | ATCGAT | 1 cut(s) | 102 |
| BsaHI | GRCGYC | 1 cut(s) | 262 |
| BsaJI | CCNNGG | 1 cut(s) | 207 |
| BsaWI | WCCGGW | 1 cut(s) | 226 |
| BseAI | TCCGGA | 1 cut(s) | 226 |
| BseCI | ATCGAT | 1 cut(s) | 102 |
| BseDI | CCNNGG | 1 cut(s) | 207 |
| BseGI | GGATG | 2 cut(s) | 177, 398 |
| BseSI | GKGCMC | 1 cut(s) | 529 |
| Bsh1236I | CGCG | 1 cut(s) | 246 |
| BshFI | GGCC | 1 cut(s) | 408 |
| BshNI | GGYRCC | 2 cut(s) | 261, 419 |
| BshVI | ATCGAT | 1 cut(s) | 102 |
| BsiSI | CCGG | 1 cut(s) | 227 |
| BsmAI | GTCTC | 1 cut(s) | 73 |
| BsmBI | CGTCTC | 1 cut(s) | 73 |
| BsnI | GGCC | 1 cut(s) | 408 |
| Bsp1286I | GDGCHC | 1 cut(s) | 529 |
| Bsp13I | TCCGGA | 1 cut(s) | 226 |
| Bsp143I | GATC | 6 cut(s) | 21, 120, 203, 517, 613, 625 |
| BspACI | CCGC | 2 cut(s) | 340, 561 |
| BspANI | GGCC | 1 cut(s) | 408 |
| BspDI | ATCGAT | 1 cut(s) | 102 |
| BspEI | TCCGGA | 1 cut(s) | 226 |
| BspFNI | CGCG | 1 cut(s) | 246 |
| BspHI | TCATGA | 1 cut(s) | 133 |
| BspLI | GGNNCC | 3 cut(s) | 263, 362, 421 |
| BspPI | GGATC | 2 cut(s) | 128, 198 |
| BspT107I | GGYRCC | 2 cut(s) | 261, 419 |
| BssECI | CCNNGG | 1 cut(s) | 207 |
| BssMI | GATC | 6 cut(s) | 21, 120, 203, 517, 613, 625 |
| BssNI | GRCGYC | 1 cut(s) | 262 |
| Bst6I | CTCTTC | 1 cut(s) | 361 |
| BstACI | GRCGYC | 1 cut(s) | 262 |
| BstDEI | CTNAG | 4 cut(s) | 87, 252, 284, 432 |
| BstDSI | CCRYGG | 1 cut(s) | 207 |
| BstF5I | GGATG | 2 cut(s) | 177, 398 |
| BstFNI | CGCG | 1 cut(s) | 246 |
| BstH2I | RGCGCY | 2 cut(s) | 265, 464 |
| BstHHI | GCGC | 3 cut(s) | 248, 264, 463 |
| BstKTI | GATC | 6 cut(s) | 24, 123, 206, 520, 616, 628 |
| BstMAI | GTCTC | 1 cut(s) | 73 |
| BstMBI | GATC | 6 cut(s) | 21, 120, 203, 517, 613, 625 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 268, 458, 569, 590 |
| BstSLI | GKGCMC | 1 cut(s) | 529 |
| BstUI | CGCG | 1 cut(s) | 246 |
| BstX2I | RGATCY | 1 cut(s) | 203 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 416 |
| BstYI | RGATCY | 1 cut(s) | 203 |
| Bsu15I | ATCGAT | 1 cut(s) | 102 |
| BsuI | GTATCC | 1 cut(s) | 283 |
| BsuRI | GGCC | 1 cut(s) | 408 |
| BsuTUI | ATCGAT | 1 cut(s) | 102 |
| BtgI | CCRYGG | 1 cut(s) | 207 |
| BtgZI | GCGATG | 1 cut(s) | 47 |
| BtsCI | GGATG | 2 cut(s) | 177, 398 |
| CciI | TCATGA | 1 cut(s) | 133 |
| CfoI | GCGC | 3 cut(s) | 248, 264, 463 |
| Cfr13I | GGNCC | 1 cut(s) | 308 |
| ClaI | ATCGAT | 1 cut(s) | 102 |
| CseI | GACGC | 1 cut(s) | 458 |
| CviAII | CATG | 3 cut(s) | 134, 170, 410 |
| CviJI | RGCY | 7 cut(s) | 86, 139, 149, 408, 438, 542, 593 |
| CviKI_1 | RGCY | 7 cut(s) | 86, 139, 149, 408, 438, 542, 593 |
| DdeI | CTNAG | 4 cut(s) | 87, 252, 284, 432 |
| DinI | GGCGCC | 1 cut(s) | 263 |
| DpnI | GATC | 6 cut(s) | 23, 122, 205, 519, 615, 627 |
| DpnII | GATC | 6 cut(s) | 21, 120, 203, 517, 613, 625 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 306 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 306 |
| EaeI | YGGCCR | 1 cut(s) | 406 |
| Eam1104I | CTCTTC | 1 cut(s) | 361 |
| EarI | CTCTTC | 1 cut(s) | 361 |
| Eco47I | GGWCC | 1 cut(s) | 308 |
| EgeI | GGCGCC | 1 cut(s) | 263 |
| EheI | GGCGCC | 1 cut(s) | 263 |
| Esp3I | CGTCTC | 1 cut(s) | 73 |
| FaeI | CATG | 3 cut(s) | 137, 173, 413 |
| FatI | CATG | 3 cut(s) | 133, 169, 409 |
| FbaI | TGATCA | 1 cut(s) | 517 |
| FokI | GGATG | 2 cut(s) | 164, 405 |
| FspBI | CTAG | 2 cut(s) | 543, 629 |
| GlaI | GCGC | 3 cut(s) | 247, 263, 462 |
| HaeII | RGCGCY | 2 cut(s) | 265, 464 |
| HaeIII | GGCC | 1 cut(s) | 408 |
| HapII | CCGG | 1 cut(s) | 227 |
| HgaI | GACGC | 1 cut(s) | 458 |
| HhaI | GCGC | 3 cut(s) | 248, 264, 463 |
| Hin1I | GRCGYC | 1 cut(s) | 262 |
| Hin1II | CATG | 3 cut(s) | 137, 173, 413 |
| Hin6I | GCGC | 3 cut(s) | 246, 262, 461 |
| HinP1I | GCGC | 3 cut(s) | 246, 262, 461 |
| HinfI | GANTC | 2 cut(s) | 230, 385 |
| HpaII | CCGG | 1 cut(s) | 227 |
| HphI | GGTGA | 1 cut(s) | 550 |
| Hpy166II | GTNNAC | 1 cut(s) | 374 |
| Hpy188I | TCNGA | 1 cut(s) | 517 |
| Hpy188III | TCNNGA | 6 cut(s) | 134, 227, 297, 501, 617, 629 |
| Hpy8I | GTNNAC | 1 cut(s) | 374 |
| HpyAV | CCTTC | 2 cut(s) | 70, 252 |
| HpyCH4IV | ACGT | 2 cut(s) | 301, 376 |
| HpyCH4V | TGCA | 3 cut(s) | 74, 113, 396 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 268, 458, 569, 590 |
| HpyF3I | CTNAG | 4 cut(s) | 87, 252, 284, 432 |
| HpySE526I | ACGT | 2 cut(s) | 301, 376 |
| Hsp92I | GRCGYC | 1 cut(s) | 262 |
| Hsp92II | CATG | 3 cut(s) | 137, 173, 413 |
| HspAI | GCGC | 3 cut(s) | 246, 262, 461 |
| KasI | GGCGCC | 1 cut(s) | 261 |
| Kpn2I | TCCGGA | 1 cut(s) | 226 |
| Ksp22I | TGATCA | 1 cut(s) | 517 |
| Kzo9I | GATC | 6 cut(s) | 21, 120, 203, 517, 613, 625 |
| LmnI | GCTCC | 1 cut(s) | 146 |
| LpnPI | CCDG | 6 cut(s) | 99, 240, 282, 291, 374, 390 |
| LweI | GCATC | 2 cut(s) | 19, 383 |
| MaeI | CTAG | 2 cut(s) | 543, 629 |
| MaeII | ACGT | 2 cut(s) | 301, 376 |
| MaeIII | GTNAC | 2 cut(s) | 335, 556 |
| MalI | GATC | 6 cut(s) | 23, 122, 205, 519, 615, 627 |
| MboI | GATC | 6 cut(s) | 21, 120, 203, 517, 613, 625 |
| MboII | GAAGA | 5 cut(s) | 199, 378, 560, 623, 632 |
| MflI | RGATCY | 1 cut(s) | 203 |
| MhlI | GDGCHC | 1 cut(s) | 529 |
| MlsI | TGGCCA | 1 cut(s) | 408 |
| MluCI | AATT | 4 cut(s) | 5, 196, 235, 316 |
| MluNI | TGGCCA | 1 cut(s) | 408 |
| Mly113I | GGCGCC | 1 cut(s) | 262 |
| MlyI | GAGTC | 1 cut(s) | 394 |
| MnlI | CCTC | 4 cut(s) | 74, 362, 412, 474 |
| Mox20I | TGGCCA | 1 cut(s) | 408 |
| MroI | TCCGGA | 1 cut(s) | 226 |
| MscI | TGGCCA | 1 cut(s) | 408 |
| MslI | CAYNNNNRTG | 3 cut(s) | 182, 414, 444 |
| Msp20I | TGGCCA | 1 cut(s) | 408 |
| MspI | CCGG | 1 cut(s) | 227 |
| MvnI | CGCG | 1 cut(s) | 246 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 268, 458, 569, 590 |
| NarI | GGCGCC | 1 cut(s) | 262 |
| NdeII | GATC | 6 cut(s) | 21, 120, 203, 517, 613, 625 |
| NlaIII | CATG | 3 cut(s) | 137, 173, 413 |
| NlaIV | GGNNCC | 3 cut(s) | 263, 362, 421 |
| NmuCI | GTSAC | 1 cut(s) | 556 |
| PagI | TCATGA | 1 cut(s) | 133 |
| PfeI | GAWTC | 1 cut(s) | 230 |
| PleI | GAGTC | 1 cut(s) | 393 |
| PluTI | GGCGCC | 1 cut(s) | 265 |
| PpsI | GAGTC | 1 cut(s) | 393 |
| PsiI | TTATAA | 1 cut(s) | 240 |
| PspN4I | GGNNCC | 3 cut(s) | 263, 362, 421 |
| PspPI | GGNCC | 1 cut(s) | 308 |
| PsuI | RGATCY | 1 cut(s) | 203 |
| RseI | CAYNNNNRTG | 3 cut(s) | 182, 414, 444 |
| Sau3AI | GATC | 6 cut(s) | 21, 120, 203, 517, 613, 625 |
| Sau96I | GGNCC | 1 cut(s) | 308 |
| SchI | GAGTC | 1 cut(s) | 394 |
| SduI | GDGCHC | 1 cut(s) | 529 |
| SetI | ASST | 9 cut(s) | 62, 131, 141, 151, 304, 373, 379, 544, 595 |
| SfaNI | GCATC | 2 cut(s) | 19, 383 |
| SfoI | GGCGCC | 1 cut(s) | 263 |
| SinI | GGWCC | 1 cut(s) | 308 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 182, 414, 444 |
| Sse9I | AATT | 4 cut(s) | 5, 196, 235, 316 |
| SsiI | CCGC | 2 cut(s) | 340, 561 |
| SspDI | GGCGCC | 1 cut(s) | 261 |
| SspMI | CTAG | 2 cut(s) | 543, 629 |
| TaiI | ACGT | 2 cut(s) | 304, 379 |
| TaqI | TCGA | 3 cut(s) | 102, 159, 502 |
| TasI | AATT | 4 cut(s) | 5, 196, 235, 316 |
| TfiI | GAWTC | 1 cut(s) | 230 |
| TseFI | GTSAC | 1 cut(s) | 556 |
| Tsp45I | GTSAC | 1 cut(s) | 556 |
| TspDTI | ATGAA | 3 cut(s) | 122, 167, 177 |
| TspGWI | ACGGA | 3 cut(s) | 133, 196, 373 |
| VpaK11BI | GGWCC | 1 cut(s) | 308 |
| XapI | RAATTY | 1 cut(s) | 5 |
| XbaI | TCTAGA | 1 cut(s) | 628 |
| XspI | CTAG | 2 cut(s) | 543, 629 |