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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 498 |
| AccB1I | GGYRCC | 1 cut(s) | 338 |
| AccII | CGCG | 2 cut(s) | 7, 438 |
| AciI | CCGC | 1 cut(s) | 130 |
| AcuI | CTGAAG | 1 cut(s) | 398 |
| AfaI | GTAC | 1 cut(s) | 153 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 520 |
| AflIII | ACRYGT | 1 cut(s) | 568 |
| AgsI | TTSAA | 1 cut(s) | 145 |
| AluBI | AGCT | 2 cut(s) | 331, 353 |
| AluI | AGCT | 2 cut(s) | 331, 353 |
| Alw26I | GTCTC | 1 cut(s) | 265 |
| Ama87I | CYCGRG | 1 cut(s) | 62 |
| ApeKI | GCWGC | 1 cut(s) | 67 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 174 |
| AspLEI | GCGC | 2 cut(s) | 9, 440 |
| AspS9I | GGNCC | 1 cut(s) | 500 |
| AvaI | CYCGRG | 1 cut(s) | 62 |
| AvaII | GGWCC | 1 cut(s) | 500 |
| BanI | GGYRCC | 1 cut(s) | 338 |
| BbsI | GAAGAC | 1 cut(s) | 41 |
| BbvI | GCAGC | 1 cut(s) | 79 |
| BccI | CCATC | 2 cut(s) | 111, 187 |
| BcoDI | GTCTC | 1 cut(s) | 265 |
| BfaI | CTAG | 3 cut(s) | 101, 306, 393 |
| BisI | GCNGC | 1 cut(s) | 68 |
| BlsI | GCNGC | 1 cut(s) | 69 |
| Bme18I | GGWCC | 1 cut(s) | 500 |
| BmeT110I | CYCGRG | 1 cut(s) | 62 |
| BmgT120I | GGNCC | 1 cut(s) | 500 |
| BmiI | GGNNCC | 3 cut(s) | 340, 406, 554 |
| BpiI | GAAGAC | 1 cut(s) | 41 |
| BsaBI | GATNNNNATC | 1 cut(s) | 230 |
| BsaJI | CCNNGG | 2 cut(s) | 399, 556 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 520 |
| Bse8I | GATNNNNATC | 1 cut(s) | 230 |
| BseDI | CCNNGG | 2 cut(s) | 399, 556 |
| BseJI | GATNNNNATC | 1 cut(s) | 230 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 520 |
| BseXI | GCAGC | 1 cut(s) | 79 |
| Bsh1236I | CGCG | 2 cut(s) | 7, 438 |
| BshNI | GGYRCC | 1 cut(s) | 338 |
| BsiHKCI | CYCGRG | 1 cut(s) | 62 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 520 |
| BsmAI | GTCTC | 1 cut(s) | 265 |
| BsmBI | CGTCTC | 1 cut(s) | 265 |
| BsoBI | CYCGRG | 1 cut(s) | 62 |
| Bsp143I | GATC | 1 cut(s) | 231 |
| BspACI | CCGC | 1 cut(s) | 130 |
| BspFNI | CGCG | 2 cut(s) | 7, 438 |
| BspHI | TCATGA | 1 cut(s) | 325 |
| BspLI | GGNNCC | 3 cut(s) | 340, 406, 554 |
| BspT107I | GGYRCC | 1 cut(s) | 338 |
| BssECI | CCNNGG | 2 cut(s) | 399, 556 |
| BssMI | GATC | 1 cut(s) | 231 |
| Bst4CI | ACNGT | 1 cut(s) | 557 |
| Bst6I | CTCTTC | 1 cut(s) | 569 |
| BstDEI | CTNAG | 1 cut(s) | 106 |
| BstDSI | CCRYGG | 2 cut(s) | 399, 556 |
| BstFNI | CGCG | 2 cut(s) | 7, 438 |
| BstHHI | GCGC | 2 cut(s) | 9, 440 |
| BstKTI | GATC | 1 cut(s) | 234 |
| BstMAI | GTCTC | 1 cut(s) | 265 |
| BstMBI | GATC | 1 cut(s) | 231 |
| BstNSI | RCATGY | 1 cut(s) | 572 |
| BstUI | CGCG | 2 cut(s) | 7, 438 |
| BstV1I | GCAGC | 1 cut(s) | 79 |
| BstV2I | GAAGAC | 1 cut(s) | 41 |
| BtgI | CCRYGG | 2 cut(s) | 399, 556 |
| CciI | TCATGA | 1 cut(s) | 325 |
| CfoI | GCGC | 2 cut(s) | 9, 440 |
| Cfr13I | GGNCC | 1 cut(s) | 500 |
| CseI | GACGC | 2 cut(s) | 13, 462 |
| Csp6I | GTAC | 1 cut(s) | 152 |
| CviAII | CATG | 4 cut(s) | 326, 343, 549, 569 |
| CviJI | RGCY | 5 cut(s) | 126, 278, 331, 353, 407 |
| CviKI_1 | RGCY | 5 cut(s) | 126, 278, 331, 353, 407 |
| CviQI | GTAC | 1 cut(s) | 152 |
| DdeI | CTNAG | 1 cut(s) | 106 |
| DpnI | GATC | 1 cut(s) | 233 |
| DpnII | GATC | 1 cut(s) | 231 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 498 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 498 |
| Eam1104I | CTCTTC | 1 cut(s) | 569 |
| EarI | CTCTTC | 1 cut(s) | 569 |
| Eco47I | GGWCC | 1 cut(s) | 500 |
| Eco57I | CTGAAG | 1 cut(s) | 398 |
| Eco88I | CYCGRG | 1 cut(s) | 62 |
| Esp3I | CGTCTC | 1 cut(s) | 265 |
| FaeI | CATG | 4 cut(s) | 329, 346, 552, 572 |
| FatI | CATG | 4 cut(s) | 325, 342, 548, 568 |
| Fnu4HI | GCNGC | 1 cut(s) | 68 |
| Fsp4HI | GCNGC | 1 cut(s) | 68 |
| FspBI | CTAG | 3 cut(s) | 101, 306, 393 |
| GlaI | GCGC | 2 cut(s) | 8, 439 |
| GluI | GCNGC | 1 cut(s) | 68 |
| HgaI | GACGC | 2 cut(s) | 13, 462 |
| HhaI | GCGC | 2 cut(s) | 9, 440 |
| Hin1II | CATG | 4 cut(s) | 329, 346, 552, 572 |
| Hin6I | GCGC | 2 cut(s) | 7, 438 |
| HinP1I | GCGC | 2 cut(s) | 7, 438 |
| HinfI | GANTC | 2 cut(s) | 89, 422 |
| Hpy166II | GTNNAC | 1 cut(s) | 206 |
| Hpy188I | TCNGA | 3 cut(s) | 291, 378, 421 |
| Hpy188III | TCNNGA | 5 cut(s) | 101, 235, 326, 393, 489 |
| Hpy8I | GTNNAC | 1 cut(s) | 206 |
| HpyAV | CCTTC | 2 cut(s) | 262, 518 |
| HpyCH4III | ACNGT | 1 cut(s) | 557 |
| HpyCH4IV | ACGT | 3 cut(s) | 81, 348, 493 |
| HpyCH4V | TGCA | 1 cut(s) | 266 |
| HpyF3I | CTNAG | 1 cut(s) | 106 |
| HpySE526I | ACGT | 3 cut(s) | 81, 348, 493 |
| Hsp92II | CATG | 4 cut(s) | 329, 346, 552, 572 |
| HspAI | GCGC | 2 cut(s) | 7, 438 |
| Kzo9I | GATC | 1 cut(s) | 231 |
| LmnI | GCTCC | 3 cut(s) | 14, 404, 460 |
| LpnPI | CCDG | 2 cut(s) | 107, 474 |
| Lsp1109I | GCAGC | 1 cut(s) | 79 |
| MaeI | CTAG | 3 cut(s) | 101, 306, 393 |
| MaeII | ACGT | 3 cut(s) | 81, 348, 493 |
| MalI | GATC | 1 cut(s) | 233 |
| MboI | GATC | 1 cut(s) | 231 |
| MboII | GAAGA | 2 cut(s) | 46, 391 |
| MluCI | AATT | 7 cut(s) | 163, 197, 213, 333, 414, 427, 484 |
| MlyI | GAGTC | 1 cut(s) | 431 |
| MnlI | CCTC | 6 cut(s) | 24, 137, 443, 451, 514, 554 |
| MroXI | GAANNNNTTC | 1 cut(s) | 174 |
| MvnI | CGCG | 2 cut(s) | 7, 438 |
| NdeII | GATC | 1 cut(s) | 231 |
| NlaIII | CATG | 4 cut(s) | 329, 346, 552, 572 |
| NlaIV | GGNNCC | 3 cut(s) | 340, 406, 554 |
| NspI | RCATGY | 1 cut(s) | 572 |
| PaeR7I | CTCGAG | 1 cut(s) | 62 |
| PagI | TCATGA | 1 cut(s) | 325 |
| PciI | ACATGT | 1 cut(s) | 568 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 460 |
| PdmI | GAANNNNTTC | 1 cut(s) | 174 |
| PfeI | GAWTC | 1 cut(s) | 89 |
| PkrI | GCNGC | 1 cut(s) | 69 |
| PleI | GAGTC | 1 cut(s) | 430 |
| PpsI | GAGTC | 1 cut(s) | 430 |
| PscI | ACATGT | 1 cut(s) | 568 |
| PspN4I | GGNNCC | 3 cut(s) | 340, 406, 554 |
| PspPI | GGNCC | 1 cut(s) | 500 |
| PspXI | VCTCGAGB | 1 cut(s) | 62 |
| RsaI | GTAC | 1 cut(s) | 153 |
| RsaNI | GTAC | 1 cut(s) | 152 |
| SatI | GCNGC | 1 cut(s) | 68 |
| Sau3AI | GATC | 1 cut(s) | 231 |
| Sau96I | GGNCC | 1 cut(s) | 500 |
| SchI | GAGTC | 1 cut(s) | 431 |
| SetI | ASST | 6 cut(s) | 84, 254, 333, 351, 355, 496 |
| Sfr274I | CTCGAG | 1 cut(s) | 62 |
| SinI | GGWCC | 1 cut(s) | 500 |
| SlaI | CTCGAG | 1 cut(s) | 62 |
| SmlI | CTYRAG | 1 cut(s) | 62 |
| SmoI | CTYRAG | 1 cut(s) | 62 |
| Sse9I | AATT | 7 cut(s) | 163, 197, 213, 333, 414, 427, 484 |
| SsiI | CCGC | 1 cut(s) | 130 |
| SspMI | CTAG | 3 cut(s) | 101, 306, 393 |
| TaaI | ACNGT | 1 cut(s) | 557 |
| TaiI | ACGT | 3 cut(s) | 84, 351, 496 |
| TaqI | TCGA | 2 cut(s) | 63, 234 |
| TasI | AATT | 7 cut(s) | 163, 197, 213, 333, 414, 427, 484 |
| TatI | WGTACW | 1 cut(s) | 151 |
| TfiI | GAWTC | 1 cut(s) | 89 |
| TseI | GCWGC | 1 cut(s) | 67 |
| TspDTI | ATGAA | 2 cut(s) | 314, 359 |
| TspGWI | ACGGA | 1 cut(s) | 74 |
| VpaK11BI | GGWCC | 1 cut(s) | 500 |
| XbaI | TCTAGA | 2 cut(s) | 100, 392 |
| XceI | RCATGY | 1 cut(s) | 572 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 48 |
| XhoI | CTCGAG | 1 cut(s) | 62 |
| XmnI | GAANNNNTTC | 1 cut(s) | 174 |
| XspI | CTAG | 3 cut(s) | 101, 306, 393 |