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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 911 |
| AccIII | TCCGGA | 2 cut(s) | 135, 787 |
| AciI | CCGC | 4 cut(s) | 217, 499, 832, 1053 |
| AclI | AACGTT | 2 cut(s) | 96, 450 |
| AclWI | GGATC | 1 cut(s) | 759 |
| AcoI | YGGCCR | 1 cut(s) | 898 |
| AcsI | RAATTY | 1 cut(s) | 240 |
| AcuI | CTGAAG | 1 cut(s) | 1059 |
| AcyI | GRCGYC | 1 cut(s) | 912 |
| AfaI | GTAC | 1 cut(s) | 386 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 818 |
| AflII | CTTAAG | 1 cut(s) | 227 |
| AflIII | ACRYGT | 1 cut(s) | 13 |
| AgsI | TTSAA | 3 cut(s) | 114, 514, 949 |
| AjiI | CACGTC | 3 cut(s) | 16, 57, 274 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 426, 458 |
| AluBI | AGCT | 6 cut(s) | 130, 293, 299, 700, 710, 1034 |
| AluI | AGCT | 6 cut(s) | 130, 293, 299, 700, 710, 1034 |
| Alw21I | GWGCWC | 2 cut(s) | 702, 1036 |
| Alw26I | GTCTC | 2 cut(s) | 430, 634 |
| AlwI | GGATC | 1 cut(s) | 759 |
| Ama87I | CYCGRG | 1 cut(s) | 257 |
| Aor13HI | TCCGGA | 2 cut(s) | 135, 787 |
| AoxI | GGCC | 2 cut(s) | 231, 898 |
| ApeKI | GCWGC | 1 cut(s) | 317 |
| ApoI | RAATTY | 1 cut(s) | 240 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 543 |
| AspA2I | CCTAGG | 1 cut(s) | 263 |
| AspLEI | GCGC | 1 cut(s) | 914 |
| AspS9I | GGNCC | 1 cut(s) | 27 |
| AsuC2I | CCSGG | 1 cut(s) | 120 |
| AsuHPI | GGTGA | 2 cut(s) | 296, 1042 |
| AvaI | CYCGRG | 1 cut(s) | 257 |
| AvaII | GGWCC | 1 cut(s) | 27 |
| AvrII | CCTAGG | 1 cut(s) | 263 |
| BaeGI | GKGCMC | 1 cut(s) | 1021 |
| BalI | TGGCCA | 1 cut(s) | 900 |
| BanI | GGYRCC | 1 cut(s) | 911 |
| BanII | GRGCYC | 2 cut(s) | 702, 1036 |
| BbsI | GAAGAC | 1 cut(s) | 411 |
| Bbv12I | GWGCWC | 2 cut(s) | 702, 1036 |
| BbvI | GCAGC | 1 cut(s) | 329 |
| BccI | CCATC | 4 cut(s) | 480, 634, 923, 939 |
| BclI | TGATCA | 1 cut(s) | 1009 |
| BcnI | CCSGG | 1 cut(s) | 120 |
| BcoDI | GTCTC | 2 cut(s) | 430, 634 |
| BfaI | CTAG | 4 cut(s) | 245, 264, 476, 687 |
| BfoI | RGCGCY | 1 cut(s) | 915 |
| BfrI | CTTAAG | 1 cut(s) | 227 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 326 |
| BisI | GCNGC | 1 cut(s) | 318 |
| BlnI | CCTAGG | 1 cut(s) | 263 |
| BlsI | GCNGC | 1 cut(s) | 319 |
| Bme1390I | CCNGG | 1 cut(s) | 120 |
| Bme18I | GGWCC | 1 cut(s) | 27 |
| BmeT110I | CYCGRG | 1 cut(s) | 257 |
| BmgBI | CACGTC | 3 cut(s) | 16, 57, 274 |
| BmgT120I | GGNCC | 1 cut(s) | 27 |
| BmiI | GGNNCC | 2 cut(s) | 29, 913 |
| BmrFI | CCNGG | 1 cut(s) | 120 |
| BmsI | GCATC | 2 cut(s) | 54, 232 |
| BpiI | GAAGAC | 1 cut(s) | 411 |
| BpmI | CTGGAG | 1 cut(s) | 365 |
| BpuEI | CTTGAG | 1 cut(s) | 279 |
| BpuMI | CCSGG | 1 cut(s) | 120 |
| Bsa29I | ATCGAT | 1 cut(s) | 663 |
| BsaHI | GRCGYC | 1 cut(s) | 912 |
| BsaI | GGTCTC | 1 cut(s) | 430 |
| BsaJI | CCNNGG | 3 cut(s) | 118, 263, 768 |
| BsaWI | WCCGGW | 4 cut(s) | 24, 66, 135, 787 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 818 |
| Bse1I | ACTGG | 4 cut(s) | 78, 187, 286, 382 |
| BseAI | TCCGGA | 2 cut(s) | 135, 787 |
| BseCI | ATCGAT | 1 cut(s) | 663 |
| BseDI | CCNNGG | 3 cut(s) | 118, 263, 768 |
| BseGI | GGATG | 4 cut(s) | 144, 348, 376, 738 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 818 |
| BseNI | ACTGG | 4 cut(s) | 78, 187, 286, 382 |
| BseRI | GAGGAG | 1 cut(s) | 883 |
| BseSI | GKGCMC | 1 cut(s) | 1021 |
| BseXI | GCAGC | 1 cut(s) | 329 |
| BshFI | GGCC | 2 cut(s) | 233, 900 |
| BshNI | GGYRCC | 1 cut(s) | 911 |
| BshVI | ATCGAT | 1 cut(s) | 663 |
| BsiHKAI | GWGCWC | 2 cut(s) | 702, 1036 |
| BsiHKCI | CYCGRG | 1 cut(s) | 257 |
| BsiSI | CCGG | 5 cut(s) | 25, 67, 120, 136, 788 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 818 |
| BsmAI | GTCTC | 2 cut(s) | 430, 634 |
| BsmBI | CGTCTC | 1 cut(s) | 634 |
| BsnI | GGCC | 2 cut(s) | 233, 900 |
| Bso31I | GGTCTC | 1 cut(s) | 430 |
| BsoBI | CYCGRG | 1 cut(s) | 257 |
| Bsp1286I | GDGCHC | 3 cut(s) | 702, 1021, 1036 |
| Bsp13I | TCCGGA | 2 cut(s) | 135, 787 |
| Bsp143I | GATC | 4 cut(s) | 582, 681, 764, 1009 |
| Bsp19I | CCATGG | 1 cut(s) | 768 |
| BspACI | CCGC | 4 cut(s) | 217, 499, 832, 1053 |
| BspANI | GGCC | 2 cut(s) | 233, 900 |
| BspDI | ATCGAT | 1 cut(s) | 663 |
| BspEI | TCCGGA | 2 cut(s) | 135, 787 |
| BspHI | TCATGA | 1 cut(s) | 694 |
| BspLI | GGNNCC | 2 cut(s) | 29, 913 |
| BspPI | GGATC | 1 cut(s) | 759 |
| BspT107I | GGYRCC | 1 cut(s) | 911 |
| BspTI | CTTAAG | 1 cut(s) | 227 |
| BspTNI | GGTCTC | 1 cut(s) | 430 |
| BsrI | ACTGG | 4 cut(s) | 78, 187, 286, 382 |
| BssECI | CCNNGG | 3 cut(s) | 118, 263, 768 |
| BssMI | GATC | 4 cut(s) | 582, 681, 764, 1009 |
| BssNI | GRCGYC | 1 cut(s) | 912 |
| BssT1I | CCWWGG | 2 cut(s) | 263, 768 |
| Bst6I | CTCTTC | 1 cut(s) | 853 |
| BstACI | GRCGYC | 1 cut(s) | 912 |
| BstAFI | CTTAAG | 1 cut(s) | 227 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 274 |
| BstC8I | GCNNGC | 2 cut(s) | 221, 291 |
| BstDEI | CTNAG | 3 cut(s) | 322, 648, 924 |
| BstDSI | CCRYGG | 1 cut(s) | 768 |
| BstEII | GGTNACC | 1 cut(s) | 827 |
| BstF5I | GGATG | 4 cut(s) | 144, 348, 376, 738 |
| BstH2I | RGCGCY | 1 cut(s) | 915 |
| BstHHI | GCGC | 1 cut(s) | 914 |
| BstKTI | GATC | 4 cut(s) | 585, 684, 767, 1012 |
| BstMAI | GTCTC | 2 cut(s) | 430, 634 |
| BstMBI | GATC | 4 cut(s) | 582, 681, 764, 1009 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 42, 59, 274, 305, 314, 326, 335, 950, 1061 |
| BstPI | GGTNACC | 1 cut(s) | 827 |
| BstSCI | CCNGG | 1 cut(s) | 118 |
| BstSLI | GKGCMC | 1 cut(s) | 1021 |
| BstV1I | GCAGC | 1 cut(s) | 329 |
| BstV2I | GAAGAC | 1 cut(s) | 411 |
| BstX2I | RGATCY | 1 cut(s) | 764 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 908 |
| BstYI | RGATCY | 1 cut(s) | 764 |
| Bsu15I | ATCGAT | 1 cut(s) | 663 |
| BsuRI | GGCC | 2 cut(s) | 233, 900 |
| BsuTUI | ATCGAT | 1 cut(s) | 663 |
| BtgI | CCRYGG | 1 cut(s) | 768 |
| BtgZI | GCGATG | 1 cut(s) | 608 |
| BtrI | CACGTC | 3 cut(s) | 16, 57, 274 |
| BtsCI | GGATG | 4 cut(s) | 144, 348, 376, 738 |
| BtsI | GCAGTG | 1 cut(s) | 31 |
| BtsIMutI | CAGTG | 2 cut(s) | 31, 55 |
| Cac8I | GCNNGC | 2 cut(s) | 221, 291 |
| CciI | TCATGA | 1 cut(s) | 694 |
| CfoI | GCGC | 1 cut(s) | 914 |
| Cfr13I | GGNCC | 1 cut(s) | 27 |
| ClaI | ATCGAT | 1 cut(s) | 663 |
| CseI | GACGC | 1 cut(s) | 950 |
| Csp6I | GTAC | 1 cut(s) | 385 |
| CviAII | CATG | 4 cut(s) | 695, 731, 769, 902 |
| CviQI | GTAC | 1 cut(s) | 385 |
| DdeI | CTNAG | 3 cut(s) | 322, 648, 924 |
| DinI | GGCGCC | 1 cut(s) | 913 |
| DpnI | GATC | 4 cut(s) | 584, 683, 766, 1011 |
| DpnII | GATC | 4 cut(s) | 582, 681, 764, 1009 |
| EaeI | YGGCCR | 1 cut(s) | 898 |
| Eam1104I | CTCTTC | 1 cut(s) | 853 |
| EarI | CTCTTC | 1 cut(s) | 853 |
| EciI | GGCGGA | 1 cut(s) | 206 |
| Ecl136II | GAGCTC | 2 cut(s) | 700, 1034 |
| Eco130I | CCWWGG | 2 cut(s) | 263, 768 |
| Eco24I | GRGCYC | 2 cut(s) | 702, 1036 |
| Eco31I | GGTCTC | 1 cut(s) | 430 |
| Eco32I | GATATC | 1 cut(s) | 194 |
| Eco47I | GGWCC | 1 cut(s) | 27 |
| Eco53kI | GAGCTC | 2 cut(s) | 700, 1034 |
| Eco57I | CTGAAG | 1 cut(s) | 1059 |
| Eco88I | CYCGRG | 1 cut(s) | 257 |
| Eco91I | GGTNACC | 1 cut(s) | 827 |
| EcoICRI | GAGCTC | 2 cut(s) | 700, 1034 |
| EcoO65I | GGTNACC | 1 cut(s) | 827 |
| EcoRV | GATATC | 1 cut(s) | 194 |
| EcoT14I | CCWWGG | 2 cut(s) | 263, 768 |
| EcoT38I | GRGCYC | 2 cut(s) | 702, 1036 |
| EgeI | GGCGCC | 1 cut(s) | 913 |
| EheI | GGCGCC | 1 cut(s) | 913 |
| ErhI | CCWWGG | 2 cut(s) | 263, 768 |
| Esp3I | CGTCTC | 1 cut(s) | 634 |
| FaeI | CATG | 4 cut(s) | 698, 734, 772, 905 |
| FatI | CATG | 4 cut(s) | 694, 730, 768, 901 |
| FauNDI | CATATG | 1 cut(s) | 366 |
| FbaI | TGATCA | 1 cut(s) | 1009 |
| Fnu4HI | GCNGC | 1 cut(s) | 318 |
| FokI | GGATG | 4 cut(s) | 151, 335, 383, 725 |
| FriOI | GRGCYC | 2 cut(s) | 702, 1036 |
| Fsp4HI | GCNGC | 1 cut(s) | 318 |
| FspBI | CTAG | 4 cut(s) | 245, 264, 476, 687 |
| GlaI | GCGC | 1 cut(s) | 913 |
| GluI | GCNGC | 1 cut(s) | 318 |
| GsuI | CTGGAG | 1 cut(s) | 365 |
| HaeII | RGCGCY | 1 cut(s) | 915 |
| HaeIII | GGCC | 2 cut(s) | 233, 900 |
| HapII | CCGG | 5 cut(s) | 25, 67, 120, 136, 788 |
| HgaI | GACGC | 1 cut(s) | 950 |
| HhaI | GCGC | 1 cut(s) | 914 |
| Hin1I | GRCGYC | 1 cut(s) | 912 |
| Hin1II | CATG | 4 cut(s) | 698, 734, 772, 905 |
| Hin6I | GCGC | 1 cut(s) | 912 |
| HinP1I | GCGC | 1 cut(s) | 912 |
| HincII | GTYRAC | 5 cut(s) | 72, 83, 104, 125, 866 |
| HindII | GTYRAC | 5 cut(s) | 72, 83, 104, 125, 866 |
| HindIII | AAGCTT | 1 cut(s) | 297 |
| HinfI | GANTC | 6 cut(s) | 253, 358, 374, 458, 660, 791 |
| HpaII | CCGG | 5 cut(s) | 25, 67, 120, 136, 788 |
| HphI | GGTGA | 2 cut(s) | 296, 1042 |
| Hpy166II | GTNNAC | 5 cut(s) | 72, 83, 104, 125, 866 |
| Hpy188I | TCNGA | 2 cut(s) | 538, 1009 |
| Hpy8I | GTNNAC | 5 cut(s) | 72, 83, 104, 125, 866 |
| HpyAV | CCTTC | 4 cut(s) | 73, 120, 631, 818 |
| HpyCH4IV | ACGT | 7 cut(s) | 15, 39, 56, 96, 273, 450, 868 |
| HpyCH4V | TGCA | 1 cut(s) | 635 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 42, 59, 274, 305, 314, 326, 335, 950, 1061 |
| HpyF3I | CTNAG | 3 cut(s) | 322, 648, 924 |
| HpySE526I | ACGT | 7 cut(s) | 15, 39, 56, 96, 273, 450, 868 |
| Hsp92I | GRCGYC | 1 cut(s) | 912 |
| Hsp92II | CATG | 4 cut(s) | 698, 734, 772, 905 |
| HspAI | GCGC | 1 cut(s) | 912 |
| KasI | GGCGCC | 1 cut(s) | 911 |
| Kpn2I | TCCGGA | 2 cut(s) | 135, 787 |
| Ksp22I | TGATCA | 1 cut(s) | 1009 |
| Kzo9I | GATC | 4 cut(s) | 582, 681, 764, 1009 |
| LmnI | GCTCC | 4 cut(s) | 172, 384, 707, 1039 |
| Lsp1109I | GCAGC | 1 cut(s) | 329 |
| LweI | GCATC | 2 cut(s) | 54, 232 |
| MaeI | CTAG | 4 cut(s) | 245, 264, 476, 687 |
| MaeII | ACGT | 7 cut(s) | 15, 39, 56, 96, 273, 450, 868 |
| MaeIII | GTNAC | 6 cut(s) | 143, 455, 667, 803, 827, 1048 |
| MalI | GATC | 4 cut(s) | 584, 683, 766, 1011 |
| MboI | GATC | 4 cut(s) | 582, 681, 764, 1009 |
| MboII | GAAGA | 6 cut(s) | 413, 416, 446, 760, 870, 1052 |
| MflI | RGATCY | 1 cut(s) | 764 |
| MhlI | GDGCHC | 3 cut(s) | 702, 1021, 1036 |
| MlsI | TGGCCA | 1 cut(s) | 900 |
| MluCI | AATT | 5 cut(s) | 155, 240, 566, 757, 796 |
| MluNI | TGGCCA | 1 cut(s) | 900 |
| Mly113I | GGCGCC | 1 cut(s) | 912 |
| MlyI | GAGTC | 2 cut(s) | 352, 452 |
| MnlI | CCTC | 9 cut(s) | 319, 506, 635, 812, 854, 874, 878, 904, 966 |
| Mox20I | TGGCCA | 1 cut(s) | 900 |
| MroI | TCCGGA | 2 cut(s) | 135, 787 |
| MroXI | GAANNNNTTC | 1 cut(s) | 543 |
| MscI | TGGCCA | 1 cut(s) | 900 |
| MseI | TTAA | 3 cut(s) | 228, 552, 560 |
| MslI | CAYNNNNRTG | 5 cut(s) | 353, 369, 743, 906, 936 |
| Msp20I | TGGCCA | 1 cut(s) | 900 |
| MspCI | CTTAAG | 1 cut(s) | 227 |
| MspI | CCGG | 5 cut(s) | 25, 67, 120, 136, 788 |
| MspR9I | CCNGG | 1 cut(s) | 120 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 42, 59, 274, 305, 314, 326, 335, 950, 1061 |
| NarI | GGCGCC | 1 cut(s) | 912 |
| NciI | CCSGG | 1 cut(s) | 120 |
| NcoI | CCATGG | 1 cut(s) | 768 |
| NdeI | CATATG | 1 cut(s) | 366 |
| NdeII | GATC | 4 cut(s) | 582, 681, 764, 1009 |
| NlaIII | CATG | 4 cut(s) | 698, 734, 772, 905 |
| NlaIV | GGNNCC | 2 cut(s) | 29, 913 |
| NmuCI | GTSAC | 3 cut(s) | 455, 803, 1048 |
| PaeR7I | CTCGAG | 1 cut(s) | 257 |
| PagI | TCATGA | 1 cut(s) | 694 |
| PdmI | GAANNNNTTC | 1 cut(s) | 543 |
| PfeI | GAWTC | 4 cut(s) | 253, 374, 660, 791 |
| PkrI | GCNGC | 1 cut(s) | 319 |
| PleI | GAGTC | 2 cut(s) | 352, 452 |
| PluTI | GGCGCC | 1 cut(s) | 915 |
| PpsI | GAGTC | 2 cut(s) | 352, 452 |
| Psp124BI | GAGCTC | 2 cut(s) | 702, 1036 |
| Psp1406I | AACGTT | 2 cut(s) | 96, 450 |
| PspEI | GGTNACC | 1 cut(s) | 827 |
| PspN4I | GGNNCC | 2 cut(s) | 29, 913 |
| PspPI | GGNCC | 1 cut(s) | 27 |
| PsuI | RGATCY | 1 cut(s) | 764 |
| RsaI | GTAC | 1 cut(s) | 386 |
| RsaNI | GTAC | 1 cut(s) | 385 |
| RseI | CAYNNNNRTG | 5 cut(s) | 353, 369, 743, 906, 936 |
| SacI | GAGCTC | 2 cut(s) | 702, 1036 |
| SaqAI | TTAA | 3 cut(s) | 228, 552, 560 |
| SatI | GCNGC | 1 cut(s) | 318 |
| Sau3AI | GATC | 4 cut(s) | 582, 681, 764, 1009 |
| Sau96I | GGNCC | 1 cut(s) | 27 |
| SchI | GAGTC | 2 cut(s) | 352, 452 |
| ScrFI | CCNGG | 1 cut(s) | 120 |
| SduI | GDGCHC | 3 cut(s) | 702, 1021, 1036 |
| SfaNI | GCATC | 2 cut(s) | 54, 232 |
| SfoI | GGCGCC | 1 cut(s) | 913 |
| Sfr274I | CTCGAG | 1 cut(s) | 257 |
| SinI | GGWCC | 1 cut(s) | 27 |
| SlaI | CTCGAG | 1 cut(s) | 257 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 353, 369, 743, 906, 936 |
| SmlI | CTYRAG | 3 cut(s) | 227, 257, 294 |
| SmoI | CTYRAG | 3 cut(s) | 227, 257, 294 |
| Sse9I | AATT | 5 cut(s) | 155, 240, 566, 757, 796 |
| SsiI | CCGC | 4 cut(s) | 217, 499, 832, 1053 |
| SspDI | GGCGCC | 1 cut(s) | 911 |
| SspMI | CTAG | 4 cut(s) | 245, 264, 476, 687 |
| SstI | GAGCTC | 2 cut(s) | 702, 1036 |
| StyD4I | CCNGG | 1 cut(s) | 118 |
| StyI | CCWWGG | 2 cut(s) | 263, 768 |
| TaiI | ACGT | 7 cut(s) | 18, 42, 59, 99, 276, 453, 871 |
| TaqI | TCGA | 6 cut(s) | 258, 432, 658, 663, 761, 994 |
| TasI | AATT | 5 cut(s) | 155, 240, 566, 757, 796 |
| TfiI | GAWTC | 4 cut(s) | 253, 374, 660, 791 |
| Tru1I | TTAA | 3 cut(s) | 228, 552, 560 |
| Tru9I | TTAA | 3 cut(s) | 228, 552, 560 |
| TscAI | CASTG | 2 cut(s) | 38, 55 |
| TseFI | GTSAC | 3 cut(s) | 455, 803, 1048 |
| TseI | GCWGC | 1 cut(s) | 317 |
| Tsp45I | GTSAC | 3 cut(s) | 455, 803, 1048 |
| TspDTI | ATGAA | 5 cut(s) | 252, 410, 414, 683, 728 |
| TspRI | CASTG | 2 cut(s) | 38, 55 |
| Vha464I | CTTAAG | 1 cut(s) | 227 |
| VpaK11BI | GGWCC | 1 cut(s) | 27 |
| XapI | RAATTY | 1 cut(s) | 240 |
| XbaI | TCTAGA | 1 cut(s) | 244 |
| XhoI | CTCGAG | 1 cut(s) | 257 |
| XmaJI | CCTAGG | 1 cut(s) | 263 |
| XmnI | GAANNNNTTC | 1 cut(s) | 543 |
| XspI | CTAG | 4 cut(s) | 245, 264, 476, 687 |