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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 69 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 405 |
| AccB1I | GGYRCC | 3 cut(s) | 245, 550, 561 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 765 |
| AccIII | TCCGGA | 1 cut(s) | 325 |
| AciI | CCGC | 3 cut(s) | 37, 439, 497 |
| AclWI | GGATC | 1 cut(s) | 618 |
| AcsI | RAATTY | 1 cut(s) | 592 |
| AcyI | GRCGYC | 2 cut(s) | 521, 562 |
| AfaI | GTAC | 1 cut(s) | 60 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 356, 427, 547, 765 |
| AflIII | ACRYGT | 1 cut(s) | 475 |
| AgsI | TTSAA | 2 cut(s) | 52, 753 |
| AluBI | AGCT | 2 cut(s) | 238, 260 |
| AluI | AGCT | 2 cut(s) | 238, 260 |
| Alw21I | GWGCWC | 1 cut(s) | 457 |
| Alw44I | GTGCAC | 1 cut(s) | 453 |
| AlwI | GGATC | 1 cut(s) | 618 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 765 |
| Aor13HI | TCCGGA | 1 cut(s) | 325 |
| AoxI | GGCC | 2 cut(s) | 626, 756 |
| ApaLI | GTGCAC | 1 cut(s) | 453 |
| ApoI | RAATTY | 1 cut(s) | 592 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 81, 596 |
| AspLEI | GCGC | 1 cut(s) | 564 |
| AspS9I | GGNCC | 4 cut(s) | 407, 538, 626, 756 |
| AsuHPI | GGTGA | 1 cut(s) | 529 |
| AvaII | GGWCC | 2 cut(s) | 407, 538 |
| BaeGI | GKGCMC | 2 cut(s) | 457, 555 |
| BanI | GGYRCC | 3 cut(s) | 245, 550, 561 |
| Bbv12I | GWGCWC | 1 cut(s) | 457 |
| BccI | CCATC | 2 cut(s) | 18, 94 |
| BciVI | GTATCC | 1 cut(s) | 654 |
| BfaI | CTAG | 2 cut(s) | 300, 396 |
| BfmI | CTRYAG | 1 cut(s) | 337 |
| BfoI | RGCGCY | 1 cut(s) | 565 |
| BfuI | GTATCC | 1 cut(s) | 654 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 559 |
| Bme18I | GGWCC | 2 cut(s) | 407, 538 |
| BmgT120I | GGNCC | 4 cut(s) | 407, 538, 626, 756 |
| BmiI | GGNNCC | 6 cut(s) | 247, 313, 501, 552, 563, 578 |
| BsaBI | GATNNNNATC | 2 cut(s) | 137, 609 |
| BsaHI | GRCGYC | 2 cut(s) | 521, 562 |
| BsaJI | CCNNGG | 3 cut(s) | 306, 510, 527 |
| BsaWI | WCCGGW | 1 cut(s) | 325 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 356, 427, 547, 765 |
| Bse1I | ACTGG | 2 cut(s) | 621, 770 |
| Bse3DI | GCAATG | 1 cut(s) | 540 |
| Bse8I | GATNNNNATC | 2 cut(s) | 137, 609 |
| BseAI | TCCGGA | 1 cut(s) | 325 |
| BseDI | CCNNGG | 3 cut(s) | 306, 510, 527 |
| BseGI | GGATG | 1 cut(s) | 729 |
| BseJI | GATNNNNATC | 2 cut(s) | 137, 609 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 356, 427, 547, 765 |
| BseMI | GCAATG | 1 cut(s) | 540 |
| BseMII | CTCAG | 2 cut(s) | 87, 252 |
| BseNI | ACTGG | 2 cut(s) | 621, 770 |
| BseSI | GKGCMC | 2 cut(s) | 457, 555 |
| BshFI | GGCC | 2 cut(s) | 628, 758 |
| BshNI | GGYRCC | 3 cut(s) | 245, 550, 561 |
| BsiHKAI | GWGCWC | 1 cut(s) | 457 |
| BsiSI | CCGG | 1 cut(s) | 326 |
| BslFI | GGGAC | 1 cut(s) | 401 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 356, 427, 547, 765 |
| BsmFI | GGGAC | 1 cut(s) | 401 |
| BsmI | GAATGC | 1 cut(s) | 214 |
| BsnI | GGCC | 2 cut(s) | 628, 758 |
| Bsp1286I | GDGCHC | 2 cut(s) | 457, 555 |
| Bsp13I | TCCGGA | 1 cut(s) | 325 |
| Bsp143I | GATC | 6 cut(s) | 138, 367, 469, 568, 610, 714 |
| Bsp19I | CCATGG | 1 cut(s) | 510 |
| BspACI | CCGC | 3 cut(s) | 37, 439, 497 |
| BspANI | GGCC | 2 cut(s) | 628, 758 |
| BspCNI | CTCAG | 2 cut(s) | 86, 253 |
| BspEI | TCCGGA | 1 cut(s) | 325 |
| BspHI | TCATGA | 1 cut(s) | 232 |
| BspLI | GGNNCC | 6 cut(s) | 247, 313, 501, 552, 563, 578 |
| BspPI | GGATC | 1 cut(s) | 618 |
| BspT107I | GGYRCC | 3 cut(s) | 245, 550, 561 |
| BsrDI | GCAATG | 1 cut(s) | 540 |
| BsrI | ACTGG | 2 cut(s) | 621, 770 |
| BssECI | CCNNGG | 3 cut(s) | 306, 510, 527 |
| BssMI | GATC | 6 cut(s) | 138, 367, 469, 568, 610, 714 |
| BssNI | GRCGYC | 2 cut(s) | 521, 562 |
| BssT1I | CCWWGG | 2 cut(s) | 510, 527 |
| Bst4CI | ACNGT | 1 cut(s) | 464 |
| Bst6I | CTCTTC | 1 cut(s) | 476 |
| BstACI | GRCGYC | 2 cut(s) | 521, 562 |
| BstDEI | CTNAG | 5 cut(s) | 73, 186, 261, 378, 736 |
| BstDSI | CCRYGG | 2 cut(s) | 306, 510 |
| BstF5I | GGATG | 1 cut(s) | 729 |
| BstH2I | RGCGCY | 1 cut(s) | 565 |
| BstHHI | GCGC | 1 cut(s) | 564 |
| BstKTI | GATC | 6 cut(s) | 141, 370, 472, 571, 613, 717 |
| BstMBI | GATC | 6 cut(s) | 138, 367, 469, 568, 610, 714 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 559, 670, 691 |
| BstNSI | RCATGY | 1 cut(s) | 638 |
| BstSFI | CTRYAG | 1 cut(s) | 337 |
| BstSLI | GKGCMC | 2 cut(s) | 457, 555 |
| BsuI | GTATCC | 1 cut(s) | 654 |
| BsuRI | GGCC | 2 cut(s) | 628, 758 |
| BtgI | CCRYGG | 2 cut(s) | 306, 510 |
| BtsCI | GGATG | 1 cut(s) | 729 |
| CaiI | CAGNNNCTG | 1 cut(s) | 765 |
| CciI | TCATGA | 1 cut(s) | 232 |
| CfoI | GCGC | 1 cut(s) | 564 |
| Cfr13I | GGNCC | 4 cut(s) | 407, 538, 626, 756 |
| CseI | GACGC | 3 cut(s) | 369, 529, 670 |
| Csp6I | GTAC | 1 cut(s) | 59 |
| CviAII | CATG | 5 cut(s) | 233, 250, 511, 635, 702 |
| CviJI | RGCY | 8 cut(s) | 33, 80, 238, 260, 502, 579, 628, 758 |
| CviKI_1 | RGCY | 8 cut(s) | 33, 80, 238, 260, 502, 579, 628, 758 |
| CviQI | GTAC | 1 cut(s) | 59 |
| DdeI | CTNAG | 5 cut(s) | 73, 186, 261, 378, 736 |
| DinI | GGCGCC | 1 cut(s) | 563 |
| DpnI | GATC | 6 cut(s) | 140, 369, 471, 570, 612, 716 |
| DpnII | GATC | 6 cut(s) | 138, 367, 469, 568, 610, 714 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 405 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 405 |
| Eam1104I | CTCTTC | 1 cut(s) | 476 |
| EarI | CTCTTC | 1 cut(s) | 476 |
| EciI | GGCGGA | 1 cut(s) | 512 |
| Eco130I | CCWWGG | 2 cut(s) | 510, 527 |
| Eco47I | GGWCC | 2 cut(s) | 407, 538 |
| EcoT14I | CCWWGG | 2 cut(s) | 510, 527 |
| EgeI | GGCGCC | 1 cut(s) | 563 |
| EheI | GGCGCC | 1 cut(s) | 563 |
| ErhI | CCWWGG | 2 cut(s) | 510, 527 |
| FaeI | CATG | 5 cut(s) | 236, 253, 514, 638, 705 |
| FaqI | GGGAC | 1 cut(s) | 401 |
| FatI | CATG | 5 cut(s) | 232, 249, 510, 634, 701 |
| FokI | GGATG | 1 cut(s) | 736 |
| FspBI | CTAG | 2 cut(s) | 300, 396 |
| GlaI | GCGC | 1 cut(s) | 563 |
| HaeII | RGCGCY | 1 cut(s) | 565 |
| HaeIII | GGCC | 2 cut(s) | 628, 758 |
| HapII | CCGG | 1 cut(s) | 326 |
| HgaI | GACGC | 3 cut(s) | 369, 529, 670 |
| HhaI | GCGC | 1 cut(s) | 564 |
| Hin1I | GRCGYC | 2 cut(s) | 521, 562 |
| Hin1II | CATG | 5 cut(s) | 236, 253, 514, 638, 705 |
| Hin6I | GCGC | 1 cut(s) | 562 |
| HinP1I | GCGC | 1 cut(s) | 562 |
| HinfI | GANTC | 1 cut(s) | 329 |
| HpaII | CCGG | 1 cut(s) | 326 |
| HphI | GGTGA | 1 cut(s) | 529 |
| Hpy166II | GTNNAC | 2 cut(s) | 455, 744 |
| Hpy188I | TCNGA | 3 cut(s) | 76, 198, 507 |
| Hpy188III | TCNNGA | 8 cut(s) | 8, 142, 233, 300, 326, 396, 679, 718 |
| Hpy8I | GTNNAC | 2 cut(s) | 455, 744 |
| HpyAV | CCTTC | 4 cut(s) | 92, 169, 350, 425 |
| HpyCH4III | ACNGT | 1 cut(s) | 464 |
| HpyCH4IV | ACGT | 4 cut(s) | 217, 255, 475, 728 |
| HpyCH4V | TGCA | 4 cut(s) | 173, 212, 455, 658 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 559, 670, 691 |
| HpyF3I | CTNAG | 5 cut(s) | 73, 186, 261, 378, 736 |
| HpySE526I | ACGT | 4 cut(s) | 217, 255, 475, 728 |
| Hsp92I | GRCGYC | 2 cut(s) | 521, 562 |
| Hsp92II | CATG | 5 cut(s) | 236, 253, 514, 638, 705 |
| HspAI | GCGC | 1 cut(s) | 562 |
| KasI | GGCGCC | 1 cut(s) | 561 |
| Kpn2I | TCCGGA | 1 cut(s) | 325 |
| Kzo9I | GATC | 6 cut(s) | 138, 367, 469, 568, 610, 714 |
| LmnI | GCTCC | 3 cut(s) | 499, 576, 705 |
| LpnPI | CCDG | 9 cut(s) | 21, 198, 339, 390, 593, 602, 661, 751, 772 |
| MaeI | CTAG | 2 cut(s) | 300, 396 |
| MaeII | ACGT | 4 cut(s) | 217, 255, 475, 728 |
| MaeIII | GTNAC | 1 cut(s) | 517 |
| MalI | GATC | 6 cut(s) | 140, 369, 471, 570, 612, 716 |
| MboI | GATC | 6 cut(s) | 138, 367, 469, 568, 610, 714 |
| MboII | GAAGA | 4 cut(s) | 298, 493, 592, 724 |
| MhlI | GDGCHC | 2 cut(s) | 457, 555 |
| MluCI | AATT | 4 cut(s) | 190, 295, 391, 592 |
| Mly113I | GGCGCC | 1 cut(s) | 562 |
| MlyI | GAGTC | 1 cut(s) | 338 |
| MmeI | TCCRAC | 1 cut(s) | 530 |
| MnlI | CCTC | 9 cut(s) | 44, 421, 441, 487, 513, 551, 575, 684, 714 |
| MroI | TCCGGA | 1 cut(s) | 325 |
| MroXI | GAANNNNTTC | 2 cut(s) | 81, 596 |
| MslI | CAYNNNNRTG | 1 cut(s) | 515 |
| MspI | CCGG | 1 cut(s) | 326 |
| Mva1269I | GAATGC | 1 cut(s) | 214 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 559, 670, 691 |
| NarI | GGCGCC | 1 cut(s) | 562 |
| NcoI | CCATGG | 1 cut(s) | 510 |
| NdeII | GATC | 6 cut(s) | 138, 367, 469, 568, 610, 714 |
| NlaIII | CATG | 5 cut(s) | 236, 253, 514, 638, 705 |
| NlaIV | GGNNCC | 6 cut(s) | 247, 313, 501, 552, 563, 578 |
| NmuCI | GTSAC | 1 cut(s) | 517 |
| NspI | RCATGY | 1 cut(s) | 638 |
| PagI | TCATGA | 1 cut(s) | 232 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 367 |
| PctI | GAATGC | 1 cut(s) | 214 |
| PdmI | GAANNNNTTC | 2 cut(s) | 81, 596 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 765 |
| PleI | GAGTC | 1 cut(s) | 337 |
| PluTI | GGCGCC | 1 cut(s) | 565 |
| PpsI | GAGTC | 1 cut(s) | 337 |
| PsiI | TTATAA | 1 cut(s) | 69 |
| PspN4I | GGNNCC | 6 cut(s) | 247, 313, 501, 552, 563, 578 |
| PspPI | GGNCC | 4 cut(s) | 407, 538, 626, 756 |
| PstNI | CAGNNNCTG | 1 cut(s) | 765 |
| RsaI | GTAC | 1 cut(s) | 60 |
| RsaNI | GTAC | 1 cut(s) | 59 |
| RseI | CAYNNNNRTG | 1 cut(s) | 515 |
| Sau3AI | GATC | 6 cut(s) | 138, 367, 469, 568, 610, 714 |
| Sau96I | GGNCC | 4 cut(s) | 407, 538, 626, 756 |
| SchI | GAGTC | 1 cut(s) | 338 |
| SduI | GDGCHC | 2 cut(s) | 457, 555 |
| SetI | ASST | 9 cut(s) | 161, 220, 230, 240, 258, 262, 452, 478, 731 |
| SfcI | CTRYAG | 1 cut(s) | 337 |
| SfoI | GGCGCC | 1 cut(s) | 563 |
| SinI | GGWCC | 2 cut(s) | 407, 538 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 515 |
| Sse9I | AATT | 4 cut(s) | 190, 295, 391, 592 |
| SsiI | CCGC | 3 cut(s) | 37, 439, 497 |
| SspDI | GGCGCC | 1 cut(s) | 561 |
| SspMI | CTAG | 2 cut(s) | 300, 396 |
| StyI | CCWWGG | 2 cut(s) | 510, 527 |
| TaaI | ACNGT | 1 cut(s) | 464 |
| TaiI | ACGT | 4 cut(s) | 220, 258, 478, 731 |
| TaqI | TCGA | 4 cut(s) | 141, 370, 567, 603 |
| TasI | AATT | 4 cut(s) | 190, 295, 391, 592 |
| TatI | WGTACW | 1 cut(s) | 58 |
| TseFI | GTSAC | 1 cut(s) | 517 |
| Tsp45I | GTSAC | 1 cut(s) | 517 |
| TspDTI | ATGAA | 3 cut(s) | 221, 266, 605 |
| TspGWI | ACGGA | 1 cut(s) | 472 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 765 |
| VneI | GTGCAC | 1 cut(s) | 453 |
| VpaK11BI | GGWCC | 2 cut(s) | 407, 538 |
| XapI | RAATTY | 1 cut(s) | 592 |
| XbaI | TCTAGA | 2 cut(s) | 299, 395 |
| XceI | RCATGY | 1 cut(s) | 638 |
| XmnI | GAANNNNTTC | 2 cut(s) | 81, 596 |
| XspI | CTAG | 2 cut(s) | 300, 396 |