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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 590 |
| AccII | CGCG | 1 cut(s) | 444 |
| AciI | CCGC | 3 cut(s) | 136, 511, 732 |
| AclWI | GGATC | 1 cut(s) | 396 |
| AcoI | YGGCCR | 1 cut(s) | 577 |
| AcsI | RAATTY | 2 cut(s) | 203, 723 |
| AcyI | GRCGYC | 1 cut(s) | 591 |
| AgsI | TTSAA | 2 cut(s) | 151, 628 |
| AluBI | AGCT | 4 cut(s) | 337, 347, 713, 764 |
| AluI | AGCT | 4 cut(s) | 337, 347, 713, 764 |
| Alw21I | GWGCWC | 2 cut(s) | 339, 715 |
| Alw26I | GTCTC | 2 cut(s) | 67, 271 |
| AlwI | GGATC | 1 cut(s) | 396 |
| AoxI | GGCC | 1 cut(s) | 577 |
| ApoI | RAATTY | 2 cut(s) | 203, 723 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 180 |
| AspLEI | GCGC | 2 cut(s) | 446, 593 |
| AsuHPI | GGTGA | 1 cut(s) | 721 |
| BaeGI | GKGCMC | 1 cut(s) | 700 |
| BalI | TGGCCA | 1 cut(s) | 579 |
| BanI | GGYRCC | 1 cut(s) | 590 |
| BanII | GRGCYC | 2 cut(s) | 339, 715 |
| BauI | CACGAG | 1 cut(s) | 714 |
| BbsI | GAAGAC | 1 cut(s) | 251 |
| Bbv12I | GWGCWC | 2 cut(s) | 339, 715 |
| BccI | CCATC | 4 cut(s) | 117, 271, 602, 618 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 290, 324 |
| BciVI | GTATCC | 1 cut(s) | 454 |
| BcoDI | GTCTC | 2 cut(s) | 67, 271 |
| BfaI | CTAG | 3 cut(s) | 48, 113, 477 |
| BfmI | CTRYAG | 1 cut(s) | 309 |
| BfoI | RGCGCY | 1 cut(s) | 594 |
| BfuI | GTATCC | 1 cut(s) | 454 |
| BmiI | GGNNCC | 2 cut(s) | 533, 592 |
| BmsI | GCATC | 1 cut(s) | 217 |
| BpiI | GAAGAC | 1 cut(s) | 251 |
| Bsa29I | ATCGAT | 1 cut(s) | 300 |
| BsaHI | GRCGYC | 1 cut(s) | 591 |
| BsaI | GGTCTC | 1 cut(s) | 67 |
| BsaJI | CCNNGG | 1 cut(s) | 405 |
| BseCI | ATCGAT | 1 cut(s) | 300 |
| BseDI | CCNNGG | 1 cut(s) | 405 |
| BseGI | GGATG | 1 cut(s) | 476 |
| BseMII | CTCAG | 1 cut(s) | 642 |
| BseRI | GAGGAG | 1 cut(s) | 562 |
| BseSI | GKGCMC | 1 cut(s) | 700 |
| Bsh1236I | CGCG | 1 cut(s) | 444 |
| BshFI | GGCC | 1 cut(s) | 579 |
| BshNI | GGYRCC | 1 cut(s) | 590 |
| BshVI | ATCGAT | 1 cut(s) | 300 |
| BsiHKAI | GWGCWC | 2 cut(s) | 339, 715 |
| BsmAI | GTCTC | 2 cut(s) | 67, 271 |
| BsmBI | CGTCTC | 1 cut(s) | 271 |
| BsnI | GGCC | 1 cut(s) | 579 |
| Bso31I | GGTCTC | 1 cut(s) | 67 |
| Bsp1286I | GDGCHC | 3 cut(s) | 339, 700, 715 |
| Bsp143I | GATC | 3 cut(s) | 219, 401, 784 |
| Bsp19I | CCATGG | 1 cut(s) | 405 |
| BspACI | CCGC | 3 cut(s) | 136, 511, 732 |
| BspANI | GGCC | 1 cut(s) | 579 |
| BspCNI | CTCAG | 1 cut(s) | 643 |
| BspDI | ATCGAT | 1 cut(s) | 300 |
| BspFNI | CGCG | 1 cut(s) | 444 |
| BspHI | TCATGA | 1 cut(s) | 331 |
| BspLI | GGNNCC | 2 cut(s) | 533, 592 |
| BspMAI | CTGCAG | 1 cut(s) | 313 |
| BspPI | GGATC | 1 cut(s) | 396 |
| BspT107I | GGYRCC | 1 cut(s) | 590 |
| BspTNI | GGTCTC | 1 cut(s) | 67 |
| BssECI | CCNNGG | 1 cut(s) | 405 |
| BssMI | GATC | 3 cut(s) | 219, 401, 784 |
| BssNI | GRCGYC | 1 cut(s) | 591 |
| BssSI | CACGAG | 1 cut(s) | 714 |
| BssT1I | CCWWGG | 1 cut(s) | 405 |
| Bst2BI | CACGAG | 1 cut(s) | 714 |
| Bst6I | CTCTTC | 1 cut(s) | 532 |
| BstACI | GRCGYC | 1 cut(s) | 591 |
| BstDEI | CTNAG | 4 cut(s) | 285, 455, 603, 651 |
| BstDSI | CCRYGG | 1 cut(s) | 405 |
| BstEII | GGTNACC | 1 cut(s) | 506 |
| BstF5I | GGATG | 1 cut(s) | 476 |
| BstFNI | CGCG | 1 cut(s) | 444 |
| BstH2I | RGCGCY | 1 cut(s) | 594 |
| BstHHI | GCGC | 2 cut(s) | 446, 593 |
| BstKTI | GATC | 3 cut(s) | 222, 404, 787 |
| BstMAI | GTCTC | 2 cut(s) | 67, 271 |
| BstMBI | GATC | 3 cut(s) | 219, 401, 784 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 740, 761 |
| BstPI | GGTNACC | 1 cut(s) | 506 |
| BstSFI | CTRYAG | 1 cut(s) | 309 |
| BstSLI | GKGCMC | 1 cut(s) | 700 |
| BstUI | CGCG | 1 cut(s) | 444 |
| BstV2I | GAAGAC | 1 cut(s) | 251 |
| BstX2I | RGATCY | 1 cut(s) | 401 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 587 |
| BstYI | RGATCY | 1 cut(s) | 401 |
| Bsu15I | ATCGAT | 1 cut(s) | 300 |
| BsuI | GTATCC | 1 cut(s) | 454 |
| BsuRI | GGCC | 1 cut(s) | 579 |
| BsuTUI | ATCGAT | 1 cut(s) | 300 |
| BtgI | CCRYGG | 1 cut(s) | 405 |
| BtgZI | GCGATG | 1 cut(s) | 245 |
| BtsCI | GGATG | 1 cut(s) | 476 |
| CciI | TCATGA | 1 cut(s) | 331 |
| CfoI | GCGC | 2 cut(s) | 446, 593 |
| ClaI | ATCGAT | 1 cut(s) | 300 |
| CseI | GACGC | 1 cut(s) | 629 |
| CviAII | CATG | 4 cut(s) | 332, 368, 406, 581 |
| CviJI | RGCY | 7 cut(s) | 132, 337, 347, 579, 609, 713, 764 |
| CviKI_1 | RGCY | 7 cut(s) | 132, 337, 347, 579, 609, 713, 764 |
| DdeI | CTNAG | 4 cut(s) | 285, 455, 603, 651 |
| DinI | GGCGCC | 1 cut(s) | 592 |
| DpnI | GATC | 3 cut(s) | 221, 403, 786 |
| DpnII | GATC | 3 cut(s) | 219, 401, 784 |
| EaeI | YGGCCR | 1 cut(s) | 577 |
| Eam1104I | CTCTTC | 1 cut(s) | 532 |
| EarI | CTCTTC | 1 cut(s) | 532 |
| Ecl136II | GAGCTC | 2 cut(s) | 337, 713 |
| Eco130I | CCWWGG | 1 cut(s) | 405 |
| Eco24I | GRGCYC | 2 cut(s) | 339, 715 |
| Eco31I | GGTCTC | 1 cut(s) | 67 |
| Eco53kI | GAGCTC | 2 cut(s) | 337, 713 |
| Eco91I | GGTNACC | 1 cut(s) | 506 |
| EcoICRI | GAGCTC | 2 cut(s) | 337, 713 |
| EcoO65I | GGTNACC | 1 cut(s) | 506 |
| EcoRI | GAATTC | 1 cut(s) | 203 |
| EcoT14I | CCWWGG | 1 cut(s) | 405 |
| EcoT38I | GRGCYC | 2 cut(s) | 339, 715 |
| EgeI | GGCGCC | 1 cut(s) | 592 |
| EheI | GGCGCC | 1 cut(s) | 592 |
| ErhI | CCWWGG | 1 cut(s) | 405 |
| Esp3I | CGTCTC | 1 cut(s) | 271 |
| FaeI | CATG | 4 cut(s) | 335, 371, 409, 584 |
| FatI | CATG | 4 cut(s) | 331, 367, 405, 580 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 1 cut(s) | 483 |
| FriOI | GRGCYC | 2 cut(s) | 339, 715 |
| FspBI | CTAG | 3 cut(s) | 48, 113, 477 |
| GlaI | GCGC | 2 cut(s) | 445, 592 |
| HaeII | RGCGCY | 1 cut(s) | 594 |
| HaeIII | GGCC | 1 cut(s) | 579 |
| HgaI | GACGC | 1 cut(s) | 629 |
| HhaI | GCGC | 2 cut(s) | 446, 593 |
| Hin1I | GRCGYC | 1 cut(s) | 591 |
| Hin1II | CATG | 4 cut(s) | 335, 371, 409, 584 |
| Hin6I | GCGC | 2 cut(s) | 444, 591 |
| HinP1I | GCGC | 2 cut(s) | 444, 591 |
| HincII | GTYRAC | 1 cut(s) | 545 |
| HindII | GTYRAC | 1 cut(s) | 545 |
| HinfI | GANTC | 6 cut(s) | 20, 95, 247, 297, 428, 647 |
| HphI | GGTGA | 1 cut(s) | 721 |
| Hpy166II | GTNNAC | 1 cut(s) | 545 |
| Hpy188I | TCNGA | 1 cut(s) | 652 |
| Hpy188III | TCNNGA | 8 cut(s) | 107, 161, 332, 425, 468, 672, 716, 788 |
| Hpy8I | GTNNAC | 1 cut(s) | 545 |
| HpyAV | CCTTC | 3 cut(s) | 45, 268, 497 |
| HpyCH4IV | ACGT | 3 cut(s) | 87, 316, 547 |
| HpyCH4V | TGCA | 2 cut(s) | 272, 311 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 740, 761 |
| HpyF3I | CTNAG | 4 cut(s) | 285, 455, 603, 651 |
| HpySE526I | ACGT | 3 cut(s) | 87, 316, 547 |
| Hsp92I | GRCGYC | 1 cut(s) | 591 |
| Hsp92II | CATG | 4 cut(s) | 335, 371, 409, 584 |
| HspAI | GCGC | 2 cut(s) | 444, 591 |
| KasI | GGCGCC | 1 cut(s) | 590 |
| Kzo9I | GATC | 3 cut(s) | 219, 401, 784 |
| LmnI | GCTCC | 3 cut(s) | 30, 344, 769 |
| LpnPI | CCDG | 7 cut(s) | 113, 120, 297, 410, 453, 561, 672 |
| LweI | GCATC | 1 cut(s) | 217 |
| MaeI | CTAG | 3 cut(s) | 48, 113, 477 |
| MaeII | ACGT | 3 cut(s) | 87, 316, 547 |
| MaeIII | GTNAC | 5 cut(s) | 92, 304, 355, 506, 716 |
| MalI | GATC | 3 cut(s) | 221, 403, 786 |
| MboI | GATC | 3 cut(s) | 219, 401, 784 |
| MboII | GAAGA | 7 cut(s) | 50, 83, 256, 397, 549, 794, 803 |
| MflI | RGATCY | 1 cut(s) | 401 |
| MhlI | GDGCHC | 3 cut(s) | 339, 700, 715 |
| MlsI | TGGCCA | 1 cut(s) | 579 |
| MluCI | AATT | 5 cut(s) | 203, 394, 433, 487, 723 |
| MluNI | TGGCCA | 1 cut(s) | 579 |
| Mly113I | GGCGCC | 1 cut(s) | 591 |
| MlyI | GAGTC | 3 cut(s) | 89, 241, 656 |
| MnlI | CCTC | 6 cut(s) | 143, 272, 533, 553, 583, 645 |
| Mox20I | TGGCCA | 1 cut(s) | 579 |
| MroXI | GAANNNNTTC | 1 cut(s) | 180 |
| MscI | TGGCCA | 1 cut(s) | 579 |
| MseI | TTAA | 1 cut(s) | 189 |
| MslI | CAYNNNNRTG | 2 cut(s) | 585, 615 |
| Msp20I | TGGCCA | 1 cut(s) | 579 |
| MvnI | CGCG | 1 cut(s) | 444 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 740, 761 |
| NarI | GGCGCC | 1 cut(s) | 591 |
| NcoI | CCATGG | 1 cut(s) | 405 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 219, 401, 784 |
| NlaIII | CATG | 4 cut(s) | 335, 371, 409, 584 |
| NlaIV | GGNNCC | 2 cut(s) | 533, 592 |
| NmuCI | GTSAC | 3 cut(s) | 92, 355, 716 |
| PagI | TCATGA | 1 cut(s) | 331 |
| PdmI | GAANNNNTTC | 1 cut(s) | 180 |
| PfeI | GAWTC | 3 cut(s) | 20, 297, 428 |
| PflFI | GACNNNGTC | 1 cut(s) | 86 |
| PleI | GAGTC | 3 cut(s) | 89, 241, 655 |
| PluTI | GGCGCC | 1 cut(s) | 594 |
| PpsI | GAGTC | 3 cut(s) | 89, 241, 655 |
| Psp124BI | GAGCTC | 2 cut(s) | 339, 715 |
| PspEI | GGTNACC | 1 cut(s) | 506 |
| PspN4I | GGNNCC | 2 cut(s) | 533, 592 |
| PstI | CTGCAG | 1 cut(s) | 313 |
| PsuI | RGATCY | 1 cut(s) | 401 |
| PsyI | GACNNNGTC | 1 cut(s) | 86 |
| RseI | CAYNNNNRTG | 2 cut(s) | 585, 615 |
| SacI | GAGCTC | 2 cut(s) | 339, 715 |
| SaqAI | TTAA | 1 cut(s) | 189 |
| Sau3AI | GATC | 3 cut(s) | 219, 401, 784 |
| SchI | GAGTC | 3 cut(s) | 89, 241, 656 |
| SduI | GDGCHC | 3 cut(s) | 339, 700, 715 |
| SfaNI | GCATC | 1 cut(s) | 217 |
| SfcI | CTRYAG | 1 cut(s) | 309 |
| SfoI | GGCGCC | 1 cut(s) | 592 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 585, 615 |
| Sse9I | AATT | 5 cut(s) | 203, 394, 433, 487, 723 |
| SsiI | CCGC | 3 cut(s) | 136, 511, 732 |
| SspDI | GGCGCC | 1 cut(s) | 590 |
| SspMI | CTAG | 3 cut(s) | 48, 113, 477 |
| SstI | GAGCTC | 2 cut(s) | 339, 715 |
| StyI | CCWWGG | 1 cut(s) | 405 |
| TaiI | ACGT | 3 cut(s) | 90, 319, 550 |
| TaqI | TCGA | 4 cut(s) | 69, 295, 300, 673 |
| TasI | AATT | 5 cut(s) | 203, 394, 433, 487, 723 |
| TfiI | GAWTC | 3 cut(s) | 20, 297, 428 |
| Tru1I | TTAA | 1 cut(s) | 189 |
| Tru9I | TTAA | 1 cut(s) | 189 |
| TseFI | GTSAC | 3 cut(s) | 92, 355, 716 |
| Tsp45I | GTSAC | 3 cut(s) | 92, 355, 716 |
| TspDTI | ATGAA | 3 cut(s) | 51, 320, 365 |
| TspGWI | ACGGA | 2 cut(s) | 184, 544 |
| Tth111I | GACNNNGTC | 1 cut(s) | 86 |
| XapI | RAATTY | 2 cut(s) | 203, 723 |
| XmnI | GAANNNNTTC | 1 cut(s) | 180 |
| XspI | CTAG | 3 cut(s) | 48, 113, 477 |